Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011921

Physical Location & Seq

Genomic Coordinates Reverse (-)

1861301 .. 1863583

Gene Structure 2283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G026700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGAAGAGAGAGGAGGGTGTTCCCGATAGGTATACGTACCCGTCTCTCGTTAAGGCCTGCGCGAGTGAGGCGAAGGTCTGGGAAGGCAAGGCAATACATGGGTCTGCTGTGAGGTGTGGGGTTGATGGGGATGTGTTTGTGAGCACCAGTTTGATTGACTTGTATGGAAAATGTAGGGAGATTTTGTGCGCTCGCAAGGTGTTTTATGGAATGTCTGAGAGAAATGTAGTTTCTTGGACAGCTATGGTTGTTGGGTATGCCAGTGTTGGGGACTTGGACGAGGCCCGCAGGCTGTTTGATCAGATGCCGCAGAGAAATGTGGTGTCGTGGAATGTGATAATCAGTGGGTTTGTGAAATTGGGTGATTTGACAAATGCTAGGAGGATCTTTGATCAGATGCCTGAGAAGAATGTGGTTTCTTTTACTACGATGATTGATGGATATGCCAAGTACGGAGATATGGCGTCTGCAAGGTTTTTGTTTGACCAAGCCCCTAACAAAGATATTGTTGCGTGGTCGGCATTGATATCTGGGTATGCACAAAATGGTCAACCCAACGAGGCTTTGAAGATATTTCTTGAAATGAGTACGAGGAATGTTAAGCCTGATGAGTTTATAATGGTGAGCTTGATGTCAGCTTGTTCCCAAGTGGGTTGCTTGCAAGTGGCCAAATGGGTTGATTCTTACCTGAGCCAGAGCTCAATTGACGTTCGTCAGGATCATGTTCGTGCGGCTCTAATTGACATGAATGCAAAGTGTGGTAATATCGAAAGAGCAACAAGTTTGTTCGAAGCGATGCCTAAACAGGACATGATTTCATATTGTTCTATGATACAAGGGTTGTCGGTTCATGGTCGAGGGAATCAAGCTGTTGCCCTCTTCAATAAGATGTTAAATGAAGGTTTGGCTCCGGATGAGGTTGCTTTTACAGTCATCCTGACAGCCTGTAGCCGGGCAGGGCTCGTTGAGGAGGGTTGGCACTTCTTTGAATCAATGAGACCTTATGATCTTCTAAAATCAATGCCTATGGAGCCTCATGCTGGTGCTTGGGGTGCACTACTTGGAGCCTGTAAGCTAAATGGCAATATAGAGTTAGGAGAATTGGTTGCTAATCGACTTTTTGAGATTGAACCCCTAAATCCTGGTAATTATGTGCTATTGTCCAACATCTATGCGGCAGCGGACTGCTGGTTTGATGTTTCTTCTGTGAGGGACAAAATGGAAGAGCAGGGAATTAAAAAGATAAGCGGTTGCAGTTGGATTAGTTCAAAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

426

Amino Acids

47.02

Weight (kDa)

5.57

Isoelectric Point (pI)

47.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37570 AT5G37570
fragaria_vesca	FvH4_6g19660
malus_domestica	MD02G1238600.v1.1 MD07G1078100.v1.1
prunus_persica	Prupe.1G026700_v2.0.a1 Prupe.8G050400_v2.0.a1
pyrus_communis	pycom02g20390 pycom07g06180
rosa_chinensis	RchiOBHm_Chr3g0475001
rosa_laevigata	RLG00000023872
rosa_multiflora	Rmu_sc0003093.1_g000009
rosa_roxburghii	Rroxscaffold_6G00406640
rosa_rugosa	Rorug03G0146000
rosa_samantha	Rh3AG195600 Rh3BG225800 Rh3CG220600 Rh3DG221100
rosa_wichuraiana	Rw3G017810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	617
AccI	GTMKAC	1 cut(s)	32
AccII	CGCG	1 cut(s)	62
AccIII	TCCGGA	1 cut(s)	910
AciI	CCGC	6 cut(s)	286, 308, 731, 1175, 1181, 1248
AclWI	GGATC	2 cut(s)	392, 726
AcoI	YGGCCR	1 cut(s)	666
AcyI	GRCGYC	1 cut(s)	464
AfaI	GTAC	3 cut(s)	38, 452, 589
AfiI	CCNNNNNNNGG	3 cut(s)	267, 951, 1040
AgsI	TTSAA	6 cut(s)	568, 581, 883, 989, 1130, 1269
AjnI	CCWGG	1 cut(s)	1141
AluBI	AGCT	6 cut(s)	242, 627, 638, 699, 869, 1075
AluI	AGCT	6 cut(s)	242, 627, 638, 699, 869, 1075
Alw21I	GWGCWC	3 cut(s)	146, 701, 1057
Alw26I	GTCTC	2 cut(s)	48, 991
Alw44I	GTGCAC	1 cut(s)	1053
AlwI	GGATC	2 cut(s)	392, 726
Aor13HI	TCCGGA	1 cut(s)	910
AoxI	GGCC	3 cut(s)	54, 282, 666
ApaLI	GTGCAC	1 cut(s)	1053
ApeKI	GCWGC	1 cut(s)	1178
ArsI	GACNNNNNNTTYG	2 cut(s)	1175, 1207
AspLEI	GCGC	2 cut(s)	62, 191
AspS9I	GGNCC	1 cut(s)	283
AsuC2I	CCSGG	1 cut(s)	953
AsuHPI	GGTGA	2 cut(s)	374, 634
AsuII	TTCGAA	1 cut(s)	789
BaeGI	GKGCMC	1 cut(s)	1057
BaeI	ACNNNNGTAYC	2 cut(s)	824, 857
BalI	TGGCCA	1 cut(s)	668
BanII	GRGCYC	2 cut(s)	701, 963
Bbv12I	GWGCWC	3 cut(s)	146, 701, 1057
BbvI	GCAGC	1 cut(s)	1190
BccI	CCATC	2 cut(s)	119, 431
BciT130I	CCWGG	1 cut(s)	1143
BclI	TGATCA	2 cut(s)	298, 391
BcnI	CCSGG	1 cut(s)	953
BcoDI	GTCTC	2 cut(s)	48, 991
BfaI	CTAG	1 cut(s)	378
BfmI	CTRYAG	1 cut(s)	946
BisI	GCNGC	4 cut(s)	308, 732, 1176, 1179
BlsI	GCNGC	4 cut(s)	309, 733, 1177, 1180
Bme1390I	CCNGG	2 cut(s)	953, 1143
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	3 cut(s)	909, 1032, 1066
BmrFI	CCNGG	2 cut(s)	953, 1143
BmsI	GCATC	3 cut(s)	294, 387, 786
BoxI	GACNNNNGTC	1 cut(s)	711
Bpu10I	CCTNAGC	1 cut(s)	689
Bpu14I	TTCGAA	1 cut(s)	789
BpuMI	CCSGG	1 cut(s)	953
BsaAI	YACGTR	1 cut(s)	36
BsaHI	GRCGYC	1 cut(s)	464
BsaI	GGTCTC	1 cut(s)	991
BsaWI	WCCGGW	1 cut(s)	910
BsaXI	ACNNNNNCTCC	4 cut(s)	170, 200, 1089, 1119
Bsc4I	CCNNNNNNNGG	3 cut(s)	267, 951, 1040
Bse1I	ACTGG	2 cut(s)	147, 261
BseAI	TCCGGA	1 cut(s)	910
BseBI	CCWGG	1 cut(s)	1143
BseGI	GGATG	3 cut(s)	136, 919, 933
BseLI	CCNNNNNNNGG	3 cut(s)	267, 951, 1040
BseMII	CTCAG	3 cut(s)	207, 393, 680
BseNI	ACTGG	2 cut(s)	147, 261
BseRI	GAGGAG	2 cut(s)	26, 983
BseSI	GKGCMC	1 cut(s)	1057
BseXI	GCAGC	1 cut(s)	1190
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	3 cut(s)	56, 284, 668
BsiHKAI	GWGCWC	3 cut(s)	146, 701, 1057
BsiSI	CCGG	2 cut(s)	911, 952
BslFI	GGGAC	2 cut(s)	284, 1226
BslI	CCNNNNNNNGG	3 cut(s)	267, 951, 1040
BsmAI	GTCTC	2 cut(s)	48, 991
BsmBI	CGTCTC	1 cut(s)	48
BsmFI	GGGAC	2 cut(s)	284, 1226
BsmI	GAATGC	1 cut(s)	754
BsnI	GGCC	3 cut(s)	56, 284, 668
Bso31I	GGTCTC	1 cut(s)	991
Bsp119I	TTCGAA	1 cut(s)	789
Bsp1286I	GDGCHC	4 cut(s)	146, 701, 963, 1057
Bsp13I	TCCGGA	1 cut(s)	910
Bsp143I	GATC	5 cut(s)	298, 384, 391, 718, 1006
BspACI	CCGC	6 cut(s)	286, 308, 731, 1175, 1181, 1248
BspANI	GGCC	3 cut(s)	56, 284, 668
BspCNI	CTCAG	3 cut(s)	208, 394, 681
BspEI	TCCGGA	1 cut(s)	910
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	3 cut(s)	909, 1032, 1066
BspPI	GGATC	2 cut(s)	392, 726
BspQI	GCTCTTC	1 cut(s)	1218
BspT104I	TTCGAA	1 cut(s)	789
BspTNI	GGTCTC	1 cut(s)	991
BsrI	ACTGG	2 cut(s)	147, 261
BssMI	GATC	5 cut(s)	298, 384, 391, 718, 1006
BssNAI	GTATAC	1 cut(s)	33
BssNI	GRCGYC	1 cut(s)	464
Bst1107I	GTATAC	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	1143
Bst4CI	ACNGT	1 cut(s)	931
Bst6I	CTCTTC	2 cut(s)	884, 1218
BstACI	GRCGYC	1 cut(s)	464
BstBAI	YACGTR	1 cut(s)	36
BstBI	TTCGAA	1 cut(s)	789
BstC8I	GCNNGC	5 cut(s)	58, 193, 286, 290, 659
BstDEI	CTNAG	3 cut(s)	216, 402, 689
BstF5I	GGATG	3 cut(s)	136, 919, 933
BstFNI	CGCG	1 cut(s)	62
BstHHI	GCGC	2 cut(s)	62, 191
BstKTI	GATC	5 cut(s)	301, 387, 394, 721, 1009
BstMAI	GTCTC	2 cut(s)	48, 991
BstMBI	GATC	5 cut(s)	298, 384, 391, 718, 1006
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 518, 1030, 1052
BstNI	CCWGG	1 cut(s)	1143
BstPAI	GACNNNNGTC	1 cut(s)	711
BstSCI	CCNGG	2 cut(s)	951, 1141
BstSFI	CTRYAG	1 cut(s)	946
BstSLI	GKGCMC	1 cut(s)	1057
BstSNI	TACGTA	1 cut(s)	36
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	1190
BstX2I	RGATCY	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	384
BstZ17I	GTATAC	1 cut(s)	33
BsuRI	GGCC	3 cut(s)	56, 284, 668
BtgZI	GCGATG	1 cut(s)	809
BtsCI	GGATG	3 cut(s)	136, 919, 933
BtsIMutI	CAGTG	2 cut(s)	268, 349
Cac8I	GCNNGC	5 cut(s)	58, 193, 286, 290, 659
CfoI	GCGC	2 cut(s)	62, 191
Cfr13I	GGNCC	1 cut(s)	283
CseI	GACGC	1 cut(s)	453
Csp6I	GTAC	3 cut(s)	37, 451, 588
CviAII	CATG	6 cut(s)	98, 722, 745, 811, 851, 1037
CviQI	GTAC	3 cut(s)	37, 451, 588
DdeI	CTNAG	3 cut(s)	216, 402, 689
DpnI	GATC	5 cut(s)	300, 386, 393, 720, 1008
DpnII	GATC	5 cut(s)	298, 384, 391, 718, 1006
EaeI	YGGCCR	1 cut(s)	666
Eam1104I	CTCTTC	2 cut(s)	884, 1218
EarI	CTCTTC	2 cut(s)	884, 1218
Ecl136II	GAGCTC	1 cut(s)	699
Eco105I	TACGTA	1 cut(s)	36
Eco147I	AGGCCT	1 cut(s)	56
Eco24I	GRGCYC	2 cut(s)	701, 963
Eco31I	GGTCTC	1 cut(s)	991
Eco32I	GATATC	1 cut(s)	528
Eco53kI	GAGCTC	1 cut(s)	699
EcoICRI	GAGCTC	1 cut(s)	699
EcoRII	CCWGG	1 cut(s)	1141
EcoRV	GATATC	1 cut(s)	528
EcoT38I	GRGCYC	2 cut(s)	701, 963
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	6 cut(s)	101, 725, 748, 814, 854, 1040
FaqI	GGGAC	2 cut(s)	284, 1226
FatI	CATG	6 cut(s)	97, 721, 744, 810, 850, 1036
FauI	CCCGC	1 cut(s)	293
FbaI	TGATCA	2 cut(s)	298, 391
FblI	GTMKAC	1 cut(s)	32
Fnu4HI	GCNGC	4 cut(s)	308, 732, 1176, 1179
FokI	GGATG	3 cut(s)	143, 920, 926
FriOI	GRGCYC	2 cut(s)	701, 963
Fsp4HI	GCNGC	4 cut(s)	308, 732, 1176, 1179
FspBI	CTAG	1 cut(s)	378
GlaI	GCGC	2 cut(s)	61, 190
GluI	GCNGC	4 cut(s)	308, 732, 1176, 1179
HaeIII	GGCC	3 cut(s)	56, 284, 668
HapII	CCGG	2 cut(s)	911, 952
HgaI	GACGC	1 cut(s)	453
HhaI	GCGC	2 cut(s)	62, 191
Hin1I	GRCGYC	1 cut(s)	464
Hin1II	CATG	6 cut(s)	101, 725, 748, 814, 854, 1040
Hin6I	GCGC	2 cut(s)	60, 189
HinP1I	GCGC	2 cut(s)	60, 189
HincII	GTYRAC	1 cut(s)	551
HindII	GTYRAC	1 cut(s)	551
HinfI	GANTC	3 cut(s)	680, 862, 989
HpaII	CCGG	2 cut(s)	911, 952
HphI	GGTGA	2 cut(s)	374, 634
Hpy166II	GTNNAC	3 cut(s)	33, 551, 1055
Hpy188I	TCNGA	3 cut(s)	217, 303, 396
Hpy188III	TCNNGA	5 cut(s)	23, 578, 716, 911, 937
Hpy8I	GTNNAC	3 cut(s)	33, 551, 1055
HpyAV	CCTTC	3 cut(s)	67, 77, 893
HpyCH4III	ACNGT	1 cut(s)	931
HpyCH4IV	ACGT	2 cut(s)	35, 708
HpyCH4V	TGCA	6 cut(s)	470, 539, 661, 752, 1055, 1254
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 518, 1030, 1052
HpyF3I	CTNAG	3 cut(s)	216, 402, 689
HpySE526I	ACGT	2 cut(s)	35, 708
Hsp92I	GRCGYC	1 cut(s)	464
Hsp92II	CATG	6 cut(s)	101, 725, 748, 814, 854, 1040
HspAI	GCGC	2 cut(s)	60, 189
Kpn2I	TCCGGA	1 cut(s)	910
Ksp22I	TGATCA	2 cut(s)	298, 391
Kzo9I	GATC	5 cut(s)	298, 384, 391, 718, 1006
LguI	GCTCTTC	1 cut(s)	1218
LmnI	GCTCC	3 cut(s)	913, 1030, 1064
Lsp1109I	GCAGC	1 cut(s)	1190
LweI	GCATC	3 cut(s)	294, 387, 786
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	2 cut(s)	35, 708
MalI	GATC	5 cut(s)	300, 386, 393, 720, 1008
MboI	GATC	5 cut(s)	298, 384, 391, 718, 1006
MboII	GAAGA	7 cut(s)	16, 418, 580, 871, 1001, 1194, 1235
MfeI	CAATTG	1 cut(s)	702
MflI	RGATCY	1 cut(s)	384
MhlI	GDGCHC	4 cut(s)	146, 701, 963, 1057
MlsI	TGGCCA	1 cut(s)	668
MluCI	AATT	6 cut(s)	356, 702, 738, 1100, 1147, 1233
MluNI	TGGCCA	1 cut(s)	668
MmeI	TCCRAC	2 cut(s)	1188, 1238
Mox20I	TGGCCA	1 cut(s)	668
MroI	TCCGGA	1 cut(s)	910
MscI	TGGCCA	1 cut(s)	668
MseI	TTAA	4 cut(s)	51, 600, 893, 1236
MslI	CAYNNNNRTG	2 cut(s)	726, 1041
Msp20I	TGGCCA	1 cut(s)	668
MspA1I	CMGCKG	1 cut(s)	1181
MspI	CCGG	2 cut(s)	911, 952
MspR9I	CCNGG	2 cut(s)	953, 1143
MunI	CAATTG	1 cut(s)	702
Mva1269I	GAATGC	1 cut(s)	754
MvaI	CCWGG	1 cut(s)	1143
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	4 cut(s)	68, 518, 1030, 1052
NciI	CCSGG	1 cut(s)	953
NdeII	GATC	5 cut(s)	298, 384, 391, 718, 1006
NlaIII	CATG	6 cut(s)	101, 725, 748, 814, 854, 1040
NlaIV	GGNNCC	3 cut(s)	909, 1032, 1066
NspV	TTCGAA	1 cut(s)	789
PceI	AGGCCT	1 cut(s)	56
PciSI	GCTCTTC	1 cut(s)	1218
PctI	GAATGC	1 cut(s)	754
PfeI	GAWTC	3 cut(s)	680, 862, 989
PkrI	GCNGC	4 cut(s)	309, 733, 1177, 1180
Ppu21I	YACGTR	1 cut(s)	36
PshAI	GACNNNNGTC	1 cut(s)	711
PsiI	TTATAA	1 cut(s)	617
Psp124BI	GAGCTC	1 cut(s)	701
Psp6I	CCWGG	1 cut(s)	1141
PspGI	CCWGG	1 cut(s)	1141
PspN4I	GGNNCC	3 cut(s)	909, 1032, 1066
PspPI	GGNCC	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	384
RsaI	GTAC	3 cut(s)	38, 452, 589
RsaNI	GTAC	3 cut(s)	37, 451, 588
RseI	CAYNNNNRTG	2 cut(s)	726, 1041
SacI	GAGCTC	1 cut(s)	701
SapI	GCTCTTC	1 cut(s)	1218
SaqAI	TTAA	4 cut(s)	51, 600, 893, 1236
SatI	GCNGC	4 cut(s)	308, 732, 1176, 1179
Sau3AI	GATC	5 cut(s)	298, 384, 391, 718, 1006
Sau96I	GGNCC	1 cut(s)	283
ScrFI	CCNGG	2 cut(s)	953, 1143
SduI	GDGCHC	4 cut(s)	146, 701, 963, 1057
SfaNI	GCATC	3 cut(s)	294, 387, 786
SfcI	CTRYAG	1 cut(s)	946
SfuI	TTCGAA	1 cut(s)	789
SmiMI	CAYNNNNRTG	2 cut(s)	726, 1041
SnaBI	TACGTA	1 cut(s)	36
Sse9I	AATT	6 cut(s)	356, 702, 738, 1100, 1147, 1233
SseBI	AGGCCT	1 cut(s)	56
SsiI	CCGC	6 cut(s)	286, 308, 731, 1175, 1181, 1248
SspMI	CTAG	1 cut(s)	378
SstI	GAGCTC	1 cut(s)	701
StuI	AGGCCT	1 cut(s)	56
StyD4I	CCNGG	2 cut(s)	951, 1141
TaaI	ACNGT	1 cut(s)	931
TaiI	ACGT	2 cut(s)	38, 711
TaqI	TCGA	4 cut(s)	768, 789, 856, 1114
TasI	AATT	6 cut(s)	356, 702, 738, 1100, 1147, 1233
TauI	GCSGC	3 cut(s)	310, 734, 1178
TfiI	GAWTC	3 cut(s)	680, 862, 989
Tru1I	TTAA	4 cut(s)	51, 600, 893, 1236
Tru9I	TTAA	4 cut(s)	51, 600, 893, 1236
TscAI	CASTG	2 cut(s)	268, 349
TseI	GCWGC	1 cut(s)	1178
TspDTI	ATGAA	5 cut(s)	17, 761, 807, 839, 912
TspGWI	ACGGA	1 cut(s)	468
TspRI	CASTG	2 cut(s)	268, 349
VneI	GTGCAC	1 cut(s)	1053
XmiI	GTMKAC	1 cut(s)	32
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.