FvH4_6g19660

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011921
Physical Location & Seq
Forward (+)
13140693 .. 13141601
909 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19660.t1

Sequence Viewer

Length: 753 bp
ATGTCTGAGAGGAATGTGGTGACGTGGACGGCTTTGGTGGTTGGGTATGCTGGTGTTGGGGATATGGTGGAGGCGAGTAAGATGTTTGATGAGATTACCGAGAGGAATGTGGTTGTTGGTGGGTTTGTTGGGTTGGGTGATTTGGGGAGTGCGAGGAGGGTGTTTGATCGGATGCCGGAGAAGAATGTGGTTTCTTTTACTGCTATGGTTGATGGCGTTGAGTATGTGCAGAATGGTCTGCCGGATCAGGCTGTGAAAGTGTTTGTTGAAATGAGTAGGAGGAATGTGGAACTGGATGAGTTTGTGATGCCTCATGTTCTTGCGGCTCTGATTGACATGAATGCAAAGTGTGGGAATATGGAAAGAGCAACGAGTTTGTTTGAAAGTATGCCAAAACGTGACCTAATTACGTATTGTTCAATGATACAAGGGCTGTCTGTTCACGGCCGAGGGTATCAAGCTGTTGCCCTGTTCAATACGATGTTCAGTGAAGGTTTGGAACCAGATGAGGTAGCTTTTACAGTGATCCTGACTGCTTGTAGCCGTTCCGAGCTTGTTGAGGAGGGTTGGCATTTCTTTGAATTAATGAGGCATAAATATAGTATGATTCCTTCTCCTGATCACTATGCATGCATTGTTGATCTTCTTGGCCGGTTGGGACAGTTAGAAGAAGCTTATGAGCTTCTACAGTTAATGCCTGTCGAACGTCATGCTGGTGCTTGGGGCGTGGGGCGCACTACTCGGGGCATGTAA

Protein Analysis

251

Amino Acids

27.89

Weight (kDa)

4.96

Isoelectric Point (pI)

48.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 134 - 181 1.4e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011921)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37570 AT5G37570
fragaria_vesca FvH4_6g19660
malus_domestica MD02G1238600.v1.1 MD07G1078100.v1.1
prunus_persica Prupe.1G026700_v2.0.a1 Prupe.8G050400_v2.0.a1
pyrus_communis pycom02g20390 pycom07g06180
rosa_chinensis RchiOBHm_Chr3g0475001
rosa_laevigata RLG00000023872
rosa_multiflora Rmu_sc0003093.1_g000009
rosa_roxburghii Rroxscaffold_6G00406640
rosa_rugosa Rorug03G0146000
rosa_samantha Rh3AG195600 Rh3BG225800 Rh3CG220600 Rh3DG221100
rosa_wichuraiana Rw3G017810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 323
AclWI GGATC 2 cut(s) 252, 520
AcoI YGGCCR 2 cut(s) 445, 649
AgsI TTSAA 5 cut(s) 269, 383, 420, 475, 581
AjiI CACGTC 1 cut(s) 24
AluBI AGCT 5 cut(s) 461, 515, 553, 674, 682
AluI AGCT 5 cut(s) 461, 515, 553, 674, 682
AlwI GGATC 2 cut(s) 252, 520
Ama87I CYCGRG 1 cut(s) 741
AoxI GGCC 2 cut(s) 445, 649
AseI ATTAAT 1 cut(s) 584
AspLEI GCGC 1 cut(s) 735
AsuHPI GGTGA 2 cut(s) 31, 149
AvaI CYCGRG 1 cut(s) 741
BarI GAAGNNNNNNTAC 2 cut(s) 595, 627
BccI CCATC 1 cut(s) 206
BceAI ACGGC 3 cut(s) 45, 460, 528
BcgI CGANNNNNNTGC 2 cut(s) 692, 726
BclI TGATCA 1 cut(s) 619
BfmI CTRYAG 1 cut(s) 686
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
BmeT110I CYCGRG 1 cut(s) 741
BmgBI CACGTC 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 501
BmsI GCATC 2 cut(s) 162, 297
BsaAI YACGTR 1 cut(s) 411
BsaJI CCNNGG 1 cut(s) 448
Bse118I RCCGGY 1 cut(s) 651
Bse1I ACTGG 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 448
BseGI GGATG 2 cut(s) 177, 301
BseNI ACTGG 1 cut(s) 297
BseRI GAGGAG 2 cut(s) 169, 575
BseX3I CGGCCG 1 cut(s) 445
BsgI GTGCAG 1 cut(s) 248
Bsh1285I CGRYCG 1 cut(s) 448
BshFI GGCC 2 cut(s) 447, 651
BsiEI CGRYCG 1 cut(s) 448
BsiHKCI CYCGRG 1 cut(s) 741
BsiSI CCGG 3 cut(s) 176, 242, 652
BslFI GGGAC 1 cut(s) 672
BsmFI GGGAC 1 cut(s) 672
BsmI GAATGC 1 cut(s) 346
BsnI GGCC 2 cut(s) 447, 651
BsoBI CYCGRG 1 cut(s) 741
Bsp143I GATC 5 cut(s) 166, 244, 525, 619, 640
BspACI CCGC 1 cut(s) 323
BspANI GGCC 2 cut(s) 447, 651
BspLI GGNNCC 1 cut(s) 501
BspPI GGATC 2 cut(s) 252, 520
BsrFI RCCGGY 1 cut(s) 651
BsrI ACTGG 1 cut(s) 297
BssAI RCCGGY 1 cut(s) 651
BssECI CCNNGG 1 cut(s) 448
BssMI GATC 5 cut(s) 166, 244, 525, 619, 640
Bst4CI ACNGT 3 cut(s) 523, 663, 690
BstBAI YACGTR 1 cut(s) 411
BstC8I GCNNGC 1 cut(s) 631
BstDEI CTNAG 1 cut(s) 6
BstF5I GGATG 2 cut(s) 177, 301
BstHHI GCGC 1 cut(s) 735
BstKTI GATC 5 cut(s) 169, 247, 528, 622, 643
BstMBI GATC 5 cut(s) 166, 244, 525, 619, 640
BstMCI CGRYCG 1 cut(s) 448
BstMWI GCNNNNNNNGC 1 cut(s) 732
BstNSI RCATGY 2 cut(s) 633, 751
BstSFI CTRYAG 1 cut(s) 686
BstSNI TACGTA 1 cut(s) 411
BstZI CGGCCG 1 cut(s) 445
BsuRI GGCC 2 cut(s) 447, 651
BtrI CACGTC 1 cut(s) 24
BtsCI GGATG 2 cut(s) 177, 301
BtsIMutI CAGTG 2 cut(s) 493, 528
Cac8I GCNNGC 1 cut(s) 631
CfoI GCGC 1 cut(s) 735
Cfr10I RCCGGY 1 cut(s) 651
CviAII CATG 5 cut(s) 314, 337, 630, 710, 748
DdeI CTNAG 1 cut(s) 6
DpnI GATC 5 cut(s) 168, 246, 527, 621, 642
DpnII GATC 5 cut(s) 166, 244, 525, 619, 640
EaeI YGGCCR 2 cut(s) 445, 649
EagI CGGCCG 1 cut(s) 445
EclXI CGGCCG 1 cut(s) 445
Eco105I TACGTA 1 cut(s) 411
Eco52I CGGCCG 1 cut(s) 445
Eco88I CYCGRG 1 cut(s) 741
EcoT22I ATGCAT 2 cut(s) 631, 635
FaeI CATG 5 cut(s) 317, 340, 633, 713, 751
FaqI GGGAC 1 cut(s) 672
FatI CATG 5 cut(s) 313, 336, 629, 709, 747
FbaI TGATCA 1 cut(s) 619
Fnu4HI GCNGC 1 cut(s) 324
FokI GGATG 2 cut(s) 184, 308
Fsp4HI GCNGC 1 cut(s) 324
GlaI GCGC 1 cut(s) 734
GluI GCNGC 1 cut(s) 324
HaeIII GGCC 2 cut(s) 447, 651
HapII CCGG 3 cut(s) 176, 242, 652
HhaI GCGC 1 cut(s) 735
Hin1II CATG 5 cut(s) 317, 340, 633, 713, 751
Hin6I GCGC 1 cut(s) 733
HinP1I GCGC 1 cut(s) 733
HindIII AAGCTT 1 cut(s) 672
HinfI GANTC 1 cut(s) 607
HpaII CCGG 3 cut(s) 176, 242, 652
HphI GGTGA 2 cut(s) 31, 149
Hpy166II GTNNAC 2 cut(s) 27, 442
Hpy188I TCNGA 4 cut(s) 7, 171, 330, 550
Hpy188III TCNNGA 2 cut(s) 529, 617
Hpy8I GTNNAC 2 cut(s) 27, 442
HpyAV CCTTC 2 cut(s) 485, 621
HpyCH4III ACNGT 3 cut(s) 523, 663, 690
HpyCH4IV ACGT 4 cut(s) 23, 397, 410, 706
HpyCH4V TGCA 4 cut(s) 229, 344, 629, 633
HpyF10VI GCNNNNNNNGC 1 cut(s) 732
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 4 cut(s) 23, 397, 410, 706
Hsp92II CATG 5 cut(s) 317, 340, 633, 713, 751
HspAI GCGC 1 cut(s) 733
Ksp22I TGATCA 1 cut(s) 619
Kzo9I GATC 5 cut(s) 166, 244, 525, 619, 640
LweI GCATC 2 cut(s) 162, 297
MaeII ACGT 4 cut(s) 23, 397, 410, 706
MaeIII GTNAC 2 cut(s) 19, 398
MalI GATC 5 cut(s) 168, 246, 527, 621, 642
MboI GATC 5 cut(s) 166, 244, 525, 619, 640
MboII GAAGA 3 cut(s) 193, 635, 680
MluCI AATT 2 cut(s) 405, 581
Mph1103I ATGCAT 2 cut(s) 631, 635
MseI TTAA 2 cut(s) 584, 692
MslI CAYNNNNRTG 1 cut(s) 714
MspI CCGG 3 cut(s) 176, 242, 652
Mva1269I GAATGC 1 cut(s) 346
MwoI GCNNNNNNNGC 1 cut(s) 732
NdeII GATC 5 cut(s) 166, 244, 525, 619, 640
NlaIII CATG 5 cut(s) 317, 340, 633, 713, 751
NlaIV GGNNCC 1 cut(s) 501
NmeAIII GCCGAG 1 cut(s) 473
NmuCI GTSAC 2 cut(s) 19, 398
NsiI ATGCAT 2 cut(s) 631, 635
NspI RCATGY 2 cut(s) 633, 751
PaeI GCATGC 1 cut(s) 633
PctI GAATGC 1 cut(s) 346
PfeI GAWTC 1 cut(s) 607
PkrI GCNGC 1 cut(s) 325
Ppu21I YACGTR 1 cut(s) 411
PshBI ATTAAT 1 cut(s) 584
PspN4I GGNNCC 1 cut(s) 501
RseI CAYNNNNRTG 1 cut(s) 714
SaqAI TTAA 2 cut(s) 584, 692
SatI GCNGC 1 cut(s) 324
Sau3AI GATC 5 cut(s) 166, 244, 525, 619, 640
SfaNI GCATC 2 cut(s) 162, 297
SfcI CTRYAG 1 cut(s) 686
SmiMI CAYNNNNRTG 1 cut(s) 714
SnaBI TACGTA 1 cut(s) 411
SphI GCATGC 1 cut(s) 633
Sse9I AATT 2 cut(s) 405, 581
SsiI CCGC 1 cut(s) 323
TaaI ACNGT 3 cut(s) 523, 663, 690
TaiI ACGT 4 cut(s) 26, 400, 413, 709
TaqI TCGA 1 cut(s) 702
TasI AATT 2 cut(s) 405, 581
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 1 cut(s) 607
Tru1I TTAA 2 cut(s) 584, 692
Tru9I TTAA 2 cut(s) 584, 692
TscAI CASTG 2 cut(s) 493, 528
TseFI GTSAC 2 cut(s) 19, 398
Tsp45I GTSAC 2 cut(s) 19, 398
TspDTI ATGAA 1 cut(s) 353
TspRI CASTG 2 cut(s) 493, 528
VspI ATTAAT 1 cut(s) 584
XceI RCATGY 2 cut(s) 633, 751
Zsp2I ATGCAT 2 cut(s) 631, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.