pycom07g06180

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
5469439 .. 5470878
1440 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g06180.1

Sequence Viewer

Length: 1440 bp
ATGCCTACAATCCGCCTCTACTCATCGCTAGCTCCGCCCAACAGCCGCCGTCCCACTTCTCTGCTGCCTTCAATCGCATCCTTACTCAAAGGCTGCAAAACCCAATTCCATCTCGAACAAATCCACGCCCACATTGTCCGTAAAGGTTTGGAGCAAGATTGCTTCCTCATAAGCCAGTTCATCTGCCTCTCCAACGCTCTCGCTTCCCTCTCTTACTCCACCGCTGTATTTGACCGCGTCCTCAGCCCCAACACCTTTCTCTGGAACTGTCTGATCAAAGGGTACTGCGAAAGGTCTGGTTTTTTGGGCATTGTTTCTCTGTTTGTTCGGATGAAGAGGGAGGAGGGCCTTCCGGATAGGTATACGTACCCGTCTCTCTTTAAGGCGTGTGCGAGTGAGGGGAGGGTCTGGGAAGGAAGGGCGATACACGGGTCGGCGGTGAGGTGTGGAGTTGACGGGGATGTGTTTGTAGGCACCAGTTTGATTGATTTGTACGGGAAATGCAGGGAGATTGTTTGCGCTCGCAAGGTGTTTGATGGAATGTCTGAGAGAAGTGTGGTTTCTTGGACGACTATGGTTGTTGGGTATGCTAGTGTTGGGGATTTGGTGGAGGCCAACAAGCTGTTTGATCAGATGCCCCAGAGAAATGCAGTGTCGTGGAATGCGATTATTAGTGGGTTTGTAAAGATGGGGGATTTGGTCAATGCTAGGAGGATCTTTGATCAAATGCCTGAGAAGAATGTGGTTTCTTATACTACTATGATCGATGGATATGCCAAGTGTGGAGATATGGCGTCTGCGAGATTTTTGTTTGAGCAATGCTCGGATAAAGATATCGTTGCGTGGTCAGCATTGATATCAGGGTATGCTCAAAATGGTCAACCTAACGAGGCTTTAAAGATATTTCAAGAAATGAGTACGAAGAATGTTAAGCCTGACGAGTTTATAATGGTGAGCTTGATGTCAGCTTGTTCCCAAGTGGGTTGCTTGCAGGTGGCTAAATGGGTTGATTCTTACCTGAGCCAGAGCTCCATTGATGTTCGTCAGGCTCATGTTCTCGCAGCTCTGATTAACATGAATGCAATGTGTGGGAATATGGAAAGAGCAACACGTTTGTTTGAAGAGATGCCTAAGCGGGATTTGATTTCATACTGTTCTATGATACAAGGGTTGTCGATTAATGGTCAAGGGGATCAGGCTGTTTCCCTCTTCAATAAGATGCTAACTGAAGGTTTAGCTCCGGATGAGGTTGCTTTTACAGTCATCCTGACAGTTTGTAGTCGCTCTGGGCTTGTAGAGGAGGGTTGGCACTTCTTTGAATCAATGAGACATAAGTACCATTTAAATCCCTCTCCTGATCATTATGCATGTATAGTTAGTCTTCTTAGCCGGTCAGGACGGTTAAAAGCAGCTAATCGATCTTCTAAAATCAATGCATGA

Protein Analysis

480

Amino Acids

53.23

Weight (kDa)

8.37

Isoelectric Point (pI)

48.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 83 - 131 4.8e-10 PPR repeat family
PPR_2 PF13041 216 - 248 3.4e-06 PPR repeat family
PPR PF01535 218 - 248 1.4e-06 PPR repeat
PPR_2 PF13041 277 - 324 1.4e-11 PPR repeat family
PPR PF01535 280 - 309 1e-08 PPR repeat
PPR_2 PF13041 380 - 427 1e-09 PPR repeat family
PPR PF01535 382 - 412 4.4e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011921)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 947
AarI CACCTGC 1 cut(s) 982
Acc36I ACCTGC 1 cut(s) 982
AccB1I GGYRCC 1 cut(s) 473
AccI GTMKAC 1 cut(s) 362
AccII CGCG 1 cut(s) 237
AccIII TCCGGA 2 cut(s) 352, 1240
AciI CCGC 7 cut(s) 13, 35, 46, 222, 235, 437, 1135
AclWI GGATC 2 cut(s) 722, 1200
AcuI CTGAAG 1 cut(s) 1248
AcyI GRCGYC 1 cut(s) 794
AfaI GTAC 5 cut(s) 284, 368, 494, 919, 1337
AfiI CCNNNNNNNGG 1 cut(s) 261
AflIII ACRYGT 1 cut(s) 1109
AgsI TTSAA 5 cut(s) 72, 908, 1121, 1213, 1319
AluBI AGCT 8 cut(s) 32, 622, 957, 968, 1029, 1064, 1238, 1412
AluI AGCT 8 cut(s) 32, 622, 957, 968, 1029, 1064, 1238, 1412
Alw21I GWGCWC 1 cut(s) 1031
Alw26I GTCTC 2 cut(s) 378, 1321
AlwI GGATC 2 cut(s) 722, 1200
Aor13HI TCCGGA 2 cut(s) 352, 1240
AoxI GGCC 2 cut(s) 346, 612
ApeKI GCWGC 4 cut(s) 64, 93, 1061, 1409
AseI ATTAAT 1 cut(s) 1179
AspLEI GCGC 1 cut(s) 521
AspS9I GGNCC 1 cut(s) 346
AsuHPI GGTGA 2 cut(s) 451, 964
AsuNHI GCTAGC 1 cut(s) 28
BaeI ACNNNNGTAYC 6 cut(s) 416, 449, 1154, 1187, 1319, 1352
BanI GGYRCC 1 cut(s) 473
BanII GRGCYC 1 cut(s) 1031
BbsI GAAGAC 1 cut(s) 1373
Bbv12I GWGCWC 1 cut(s) 1031
BbvCI CCTCAGC 1 cut(s) 242
BbvI GCAGC 4 cut(s) 51, 80, 1073, 1421
BccI CCATC 4 cut(s) 117, 530, 682, 761
BceAI ACGGC 1 cut(s) 33
BcgI CGANNNNNNTGC 2 cut(s) 755, 789
BclI TGATCA 4 cut(s) 273, 628, 721, 1357
BcoDI GTCTC 2 cut(s) 378, 1321
BfaI CTAG 3 cut(s) 29, 591, 708
BfuAI ACCTGC 1 cut(s) 982
BisI GCNGC 5 cut(s) 46, 65, 94, 1062, 1410
BlsI GCNGC 5 cut(s) 47, 66, 95, 1063, 1411
BmgT120I GGNCC 1 cut(s) 346
BmiI GGNNCC 1 cut(s) 475
BmsI GCATC 4 cut(s) 86, 624, 1116, 1209
BmtI GCTAGC 1 cut(s) 32
BpiI GAAGAC 1 cut(s) 1373
BplI GAGNNNNNCTC 2 cut(s) 806, 838
Bpu10I CCTNAGC 3 cut(s) 242, 1019, 1131
Bsa29I ATCGAT 2 cut(s) 765, 1417
BsaAI YACGTR 1 cut(s) 366
BsaHI GRCGYC 1 cut(s) 794
BsaWI WCCGGW 2 cut(s) 352, 1240
Bsc4I CCNNNNNNNGG 1 cut(s) 261
Bse118I RCCGGY 1 cut(s) 1389
Bse1I ACTGG 2 cut(s) 175, 477
Bse3DI GCAATG 2 cut(s) 824, 1089
BseAI TCCGGA 2 cut(s) 352, 1240
BseCI ATCGAT 2 cut(s) 765, 1417
BseGI GGATG 5 cut(s) 77, 336, 466, 1249, 1263
BseLI CCNNNNNNNGG 1 cut(s) 261
BseMI GCAATG 2 cut(s) 824, 1089
BseMII CTCAG 4 cut(s) 256, 537, 723, 1010
BseNI ACTGG 2 cut(s) 175, 477
BseRI GAGGAG 2 cut(s) 356, 1313
BseXI GCAGC 4 cut(s) 51, 80, 1073, 1421
Bsh1236I CGCG 1 cut(s) 237
BshFI GGCC 2 cut(s) 348, 614
BshNI GGYRCC 1 cut(s) 473
BshVI ATCGAT 2 cut(s) 765, 1417
BsiHKAI GWGCWC 1 cut(s) 1031
BsiSI CCGG 3 cut(s) 353, 1241, 1390
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 261
BsmAI GTCTC 2 cut(s) 378, 1321
BsmBI CGTCTC 1 cut(s) 378
BsmFI GGGAC 1 cut(s) 36
BsmI GAATGC 2 cut(s) 667, 1084
BsnI GGCC 2 cut(s) 348, 614
Bsp1286I GDGCHC 1 cut(s) 1031
Bsp13I TCCGGA 2 cut(s) 352, 1240
Bsp143I GATC 8 cut(s) 273, 628, 714, 721, 762, 1192, 1357, 1418
BspACI CCGC 7 cut(s) 13, 35, 46, 222, 235, 437, 1135
BspANI GGCC 2 cut(s) 348, 614
BspCNI CTCAG 4 cut(s) 255, 538, 724, 1011
BspDI ATCGAT 2 cut(s) 765, 1417
BspEI TCCGGA 2 cut(s) 352, 1240
BspFNI CGCG 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 475
BspMI ACCTGC 1 cut(s) 982
BspOI GCTAGC 1 cut(s) 32
BspPI GGATC 2 cut(s) 722, 1200
BspT107I GGYRCC 1 cut(s) 473
BsrDI GCAATG 2 cut(s) 824, 1089
BsrFI RCCGGY 1 cut(s) 1389
BsrI ACTGG 2 cut(s) 175, 477
BssAI RCCGGY 1 cut(s) 1389
BssMI GATC 8 cut(s) 273, 628, 714, 721, 762, 1192, 1357, 1418
BssNAI GTATAC 1 cut(s) 363
BssNI GRCGYC 1 cut(s) 794
Bst1107I GTATAC 1 cut(s) 363
Bst4CI ACNGT 5 cut(s) 269, 1154, 1261, 1273, 1401
Bst6I CTCTTC 3 cut(s) 329, 1116, 1214
BstACI GRCGYC 1 cut(s) 794
BstBAI YACGTR 1 cut(s) 366
BstC8I GCNNGC 3 cut(s) 30, 523, 989
BstDEI CTNAG 6 cut(s) 242, 546, 732, 1019, 1131, 1385
BstF5I GGATG 5 cut(s) 77, 336, 466, 1249, 1263
BstFNI CGCG 1 cut(s) 237
BstHHI GCGC 1 cut(s) 521
BstKTI GATC 8 cut(s) 276, 631, 717, 724, 765, 1195, 1360, 1421
BstMAI GTCTC 2 cut(s) 378, 1321
BstMBI GATC 8 cut(s) 273, 628, 714, 721, 762, 1192, 1357, 1418
BstMWI GCNNNNNNNGC 3 cut(s) 34, 243, 848
BstNSI RCATGY 1 cut(s) 1371
BstSNI TACGTA 1 cut(s) 366
BstUI CGCG 1 cut(s) 237
BstV1I GCAGC 4 cut(s) 51, 80, 1073, 1421
BstV2I GAAGAC 1 cut(s) 1373
BstX2I RGATCY 1 cut(s) 714
BstYI RGATCY 1 cut(s) 714
BstZ17I GTATAC 1 cut(s) 363
Bsu15I ATCGAT 2 cut(s) 765, 1417
BsuRI GGCC 2 cut(s) 348, 614
BsuTUI ATCGAT 2 cut(s) 765, 1417
BtgZI GCGATG 1 cut(s) 9
BtsCI GGATG 5 cut(s) 77, 336, 466, 1249, 1263
BtsI GCAGTG 1 cut(s) 657
BtsIMutI CAGTG 1 cut(s) 657
BveI ACCTGC 1 cut(s) 982
Cac8I GCNNGC 3 cut(s) 30, 523, 989
CfoI GCGC 1 cut(s) 521
Cfr10I RCCGGY 1 cut(s) 1389
Cfr13I GGNCC 1 cut(s) 346
ClaI ATCGAT 2 cut(s) 765, 1417
CseI GACGC 2 cut(s) 226, 783
Csp6I GTAC 5 cut(s) 283, 367, 493, 918, 1336
CviAII CATG 4 cut(s) 1052, 1075, 1368, 1437
CviQI GTAC 5 cut(s) 283, 367, 493, 918, 1336
DdeI CTNAG 6 cut(s) 242, 546, 732, 1019, 1131, 1385
DpnI GATC 8 cut(s) 275, 630, 716, 723, 764, 1194, 1359, 1420
DpnII GATC 8 cut(s) 273, 628, 714, 721, 762, 1192, 1357, 1418
DraI TTTAAA 2 cut(s) 897, 1344
Eam1104I CTCTTC 3 cut(s) 329, 1116, 1214
EarI CTCTTC 3 cut(s) 329, 1116, 1214
EciI GGCGGA 1 cut(s) 24
Ecl136II GAGCTC 1 cut(s) 1029
Eco105I TACGTA 1 cut(s) 366
Eco24I GRGCYC 1 cut(s) 1031
Eco32I GATATC 2 cut(s) 835, 858
Eco53kI GAGCTC 1 cut(s) 1029
Eco57I CTGAAG 1 cut(s) 1248
EcoICRI GAGCTC 1 cut(s) 1029
EcoO109I RGGNCCY 1 cut(s) 346
EcoRV GATATC 2 cut(s) 835, 858
EcoT22I ATGCAT 2 cut(s) 1369, 1438
EcoT38I GRGCYC 1 cut(s) 1031
Esp3I CGTCTC 1 cut(s) 378
FaeI CATG 4 cut(s) 1055, 1078, 1371, 1440
FaqI GGGAC 1 cut(s) 36
FatI CATG 4 cut(s) 1051, 1074, 1367, 1436
FauI CCCGC 1 cut(s) 1128
FbaI TGATCA 4 cut(s) 273, 628, 721, 1357
FblI GTMKAC 1 cut(s) 362
Fnu4HI GCNGC 5 cut(s) 46, 65, 94, 1062, 1410
FokI GGATG 5 cut(s) 64, 343, 473, 1250, 1256
FriOI GRGCYC 1 cut(s) 1031
Fsp4HI GCNGC 5 cut(s) 46, 65, 94, 1062, 1410
FspBI CTAG 3 cut(s) 29, 591, 708
GlaI GCGC 1 cut(s) 520
GluI GCNGC 5 cut(s) 46, 65, 94, 1062, 1410
HaeIII GGCC 2 cut(s) 348, 614
HapII CCGG 3 cut(s) 353, 1241, 1390
HgaI GACGC 2 cut(s) 226, 783
HhaI GCGC 1 cut(s) 521
Hin1I GRCGYC 1 cut(s) 794
Hin1II CATG 4 cut(s) 1055, 1078, 1371, 1440
Hin6I GCGC 1 cut(s) 519
HinP1I GCGC 1 cut(s) 519
HincII GTYRAC 2 cut(s) 454, 881
HindII GTYRAC 2 cut(s) 454, 881
HinfI GANTC 2 cut(s) 1010, 1319
HpaII CCGG 3 cut(s) 353, 1241, 1390
HphI GGTGA 2 cut(s) 451, 964
Hpy166II GTNNAC 3 cut(s) 363, 454, 881
Hpy188I TCNGA 6 cut(s) 273, 330, 547, 633, 826, 1068
Hpy188III TCNNGA 8 cut(s) 113, 262, 353, 908, 1241, 1267, 1355, 1395
Hpy8I GTNNAC 3 cut(s) 363, 454, 881
HpyAV CCTTC 5 cut(s) 78, 359, 407, 411, 1223
HpyCH4III ACNGT 5 cut(s) 269, 1154, 1261, 1273, 1401
HpyCH4IV ACGT 2 cut(s) 365, 1111
HpyCH4V TGCA 7 cut(s) 96, 504, 650, 991, 1082, 1367, 1436
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 243, 848
HpyF3I CTNAG 6 cut(s) 242, 546, 732, 1019, 1131, 1385
HpySE526I ACGT 2 cut(s) 365, 1111
Hsp92I GRCGYC 1 cut(s) 794
Hsp92II CATG 4 cut(s) 1055, 1078, 1371, 1440
HspAI GCGC 1 cut(s) 519
Kpn2I TCCGGA 2 cut(s) 352, 1240
Ksp22I TGATCA 4 cut(s) 273, 628, 721, 1357
Kzo9I GATC 8 cut(s) 273, 628, 714, 721, 762, 1192, 1357, 1418
LmnI GCTCC 4 cut(s) 37, 151, 1034, 1243
Lsp1109I GCAGC 4 cut(s) 51, 80, 1073, 1421
LweI GCATC 4 cut(s) 86, 624, 1116, 1209
MaeI CTAG 3 cut(s) 29, 591, 708
MaeII ACGT 2 cut(s) 365, 1111
MalI GATC 8 cut(s) 275, 630, 716, 723, 764, 1194, 1359, 1420
MboI GATC 8 cut(s) 273, 628, 714, 721, 762, 1192, 1357, 1418
MboII GAAGA 7 cut(s) 346, 748, 934, 1133, 1201, 1373, 1413
MflI RGATCY 1 cut(s) 714
MhlI GDGCHC 1 cut(s) 1031
MluCI AATT 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 216
Mph1103I ATGCAT 2 cut(s) 1369, 1438
MroI TCCGGA 2 cut(s) 352, 1240
MseI TTAA 7 cut(s) 381, 896, 930, 1071, 1179, 1343, 1403
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 3 cut(s) 353, 1241, 1390
Mva1269I GAATGC 2 cut(s) 667, 1084
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 3 cut(s) 34, 243, 848
NdeII GATC 8 cut(s) 273, 628, 714, 721, 762, 1192, 1357, 1418
NheI GCTAGC 1 cut(s) 28
NlaIII CATG 4 cut(s) 1055, 1078, 1371, 1440
NlaIV GGNNCC 1 cut(s) 475
NsiI ATGCAT 2 cut(s) 1369, 1438
NspI RCATGY 1 cut(s) 1371
PaqCI CACCTGC 1 cut(s) 982
PcsI WCGNNNNNNNCGW 1 cut(s) 662
PctI GAATGC 2 cut(s) 667, 1084
PfeI GAWTC 2 cut(s) 1010, 1319
PflFI GACNNNGTC 1 cut(s) 236
PkrI GCNGC 5 cut(s) 47, 66, 95, 1063, 1411
Ppu21I YACGTR 1 cut(s) 366
PshBI ATTAAT 1 cut(s) 1179
PsiI TTATAA 1 cut(s) 947
Psp124BI GAGCTC 1 cut(s) 1031
PspN4I GGNNCC 1 cut(s) 475
PspPI GGNCC 1 cut(s) 346
PsuI RGATCY 1 cut(s) 714
PsyI GACNNNGTC 1 cut(s) 236
RsaI GTAC 5 cut(s) 284, 368, 494, 919, 1337
RsaNI GTAC 5 cut(s) 283, 367, 493, 918, 1336
SacI GAGCTC 1 cut(s) 1031
SaqAI TTAA 7 cut(s) 381, 896, 930, 1071, 1179, 1343, 1403
SatI GCNGC 5 cut(s) 46, 65, 94, 1062, 1410
Sau3AI GATC 8 cut(s) 273, 628, 714, 721, 762, 1192, 1357, 1418
Sau96I GGNCC 1 cut(s) 346
SduI GDGCHC 1 cut(s) 1031
SfaNI GCATC 4 cut(s) 86, 624, 1116, 1209
SmiI ATTTAAAT 1 cut(s) 1344
SnaBI TACGTA 1 cut(s) 366
Sse9I AATT 1 cut(s) 104
SsiI CCGC 7 cut(s) 13, 35, 46, 222, 235, 437, 1135
SspMI CTAG 3 cut(s) 29, 591, 708
SstI GAGCTC 1 cut(s) 1031
SwaI ATTTAAAT 1 cut(s) 1344
TaaI ACNGT 5 cut(s) 269, 1154, 1261, 1273, 1401
TaiI ACGT 2 cut(s) 368, 1114
TaqI TCGA 4 cut(s) 114, 765, 1175, 1417
TasI AATT 1 cut(s) 104
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 2 cut(s) 1010, 1319
Tru1I TTAA 7 cut(s) 381, 896, 930, 1071, 1179, 1343, 1403
Tru9I TTAA 7 cut(s) 381, 896, 930, 1071, 1179, 1343, 1403
TscAI CASTG 1 cut(s) 657
TseI GCWGC 4 cut(s) 64, 93, 1061, 1409
TspDTI ATGAA 4 cut(s) 169, 347, 1091, 1137
TspGWI ACGGA 1 cut(s) 128
TspRI CASTG 1 cut(s) 657
Tth111I GACNNNGTC 1 cut(s) 236
VspI ATTAAT 1 cut(s) 1179
XceI RCATGY 1 cut(s) 1371
XmiI GTMKAC 1 cut(s) 362
XspI CTAG 3 cut(s) 29, 591, 708
Zsp2I ATGCAT 2 cut(s) 1369, 1438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.