Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0011921

Physical Location & Seq

Genomic Coordinates Forward (+)

19581347 .. 19582982

Gene Structure 1636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G017810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1599 bp

ATGCCTAGTATGCGCGTAGCTTCAGCCTCAATCGCCACATTACTCAAAGCCTGCAAAACCCAGTTCCGTCTTGAACAAATCCACGCCCAGATCATCCACAAAGGTCTAGAGCAAGACCACTTCCTCATCACCCAATTCATCTGCCTCTCCAACGCTCTCTCCTCCCTCTCTTACTCCACCGCCGTCTTCCGCCGCGTCAACAACCCCAGCAGCCATCTCTGGAACTCACTACTCAAAGGCCACTGCGAAAGATCCAGTTTTTCCGCCACCGTCTCTCTCTTCATTCGTATGAAGAGGGAGGAGGGCGTGGCGGATGAGTACACGTACCCGTCGGTTGTGAAGGCCTGTGCCGGCGAGGGAAGGGTCCGGGAGGGAAGGGCGGTTCATGGGTCGGCGGTGAGGTGTGGGGTTGATGGGAATGTGTTTGTGGGGACTAGCTTGGTTGACTTGTATGGCAAATGTAGGGAGGTTGTGTGTGCGCGGAAGGTGTTTGATGGAATGTGTGAGAGAAATGTGGTGACTTGGACTGCTATGGTTGTTGGGTATGCCGGTGTTGGGGATATGAGGAATGCTGTGTCGTGGAATGTGGTTATTAGTGGGTTTGTTAGGTTGGGTGATTTGGGGAAGGCGAGGAGGGTGTTTGAGGAGATGCCGGGGAAAGATGTGGTTTCTTTTACTACTATGATTGATGGATATGCAAAGTCCGGGGATATGGCTTCGGCCAGGTTTTTGTTTGAGCAGGCTCCGGTTAAGGATATTGTTATGTGGTCGGCGTTGATATCGGGGTATGCACAAAATGGTTTTCCCAATCAGGCTGTGAAAATATTTCTTGAGATGAGTAGTAAGAATGTGGAACCTGATGAGTTTATAATGGTGAGCTTGATGTCAGCTTGTTCCCAAGTGGGTTGCTTGGAATTGGCTGAATGGGTTGATTCGTATCTGAGCAGTAGCTCAATCGATATTCGACAGCCTCATGTTCTTGCGGCTCTGATTGATATGAATGCAAAGTGTGGGAATATGGAAAAAGCAACGAGTTTGTTTGAAAACATGCCAAAACGGGACCTGATTTCGTATTGTTCAATGATACAAGGGTTGTCTATTCACGGCCGAGGGAATCAAGCTGTTGCCCTTTTCAATAGGATGTTAAGTGAAGGTTTGGCTCCAGATGAGGTAGCTTTTACTGTGATCCTGACAGCTTGTAGTCGTTCCGAGCTTGTTGAGGAGGGTCGGCATTTCTTTGAATTAATGAGACATAAATACAGTATGGTTCCCACTCCTGATCACTATGCATGCATGGTTGATCTTCTTAGCCGCTCAGGATGGTTAGAAGAAGCTTATGAGCTTCTACAATCAATGCCTGTGGAACCTCATGCTGGTGCTTGGGGTGCACTACTTGGTGCATGTAAGCTACATTGCAATGTTGAGTTTGGGGAGTTGGTTGCTAATCGACTCTTTGTGCTTGAACCAAAAAGTGCTGGTAGTTATGTGCTCCTCTCCGACATCTATGCTGCATTCCACCGTTGGTTGGATGTTTCTGTTGTGAGGAACAAAATGCAGGAGAGAGGCCTTAAAAAGATACCTGGTATCAGTTCAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

532

Amino Acids

58.82

Weight (kDa)

6.91

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	69 - 117	8.4e-07	PPR repeat family
PPR	PF01535	192 - 221	7.2e-07	PPR repeat
PPR_2	PF13041	251 - 298	7e-09	PPR repeat family
PPR	PF01535	254 - 284	3.2e-07	PPR repeat
PPR_2	PF13041	354 - 401	9.6e-10	PPR repeat family
E_motif	PF20431	471 - 532	5.6e-19	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37570 AT5G37570
fragaria_vesca	FvH4_6g19660
malus_domestica	MD02G1238600.v1.1 MD07G1078100.v1.1
prunus_persica	Prupe.1G026700_v2.0.a1 Prupe.8G050400_v2.0.a1
pyrus_communis	pycom02g20390 pycom07g06180
rosa_chinensis	RchiOBHm_Chr3g0475001
rosa_laevigata	RLG00000023872
rosa_multiflora	Rmu_sc0003093.1_g000009
rosa_roxburghii	Rroxscaffold_6G00406640
rosa_rugosa	Rorug03G0146000
rosa_samantha	Rh3AG195600 Rh3BG225800 Rh3CG220600 Rh3DG221100
rosa_wichuraiana	Rw3G017810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	869
AccBSI	CCGCTC	1 cut(s)	1314
AccII	CGCG	3 cut(s)	15, 195, 481
AclWI	GGATC	2 cut(s)	246, 1180
AcoI	YGGCCR	2 cut(s)	720, 1105
AcuI	CTGAAG	1 cut(s)	6
AfaI	GTAC	2 cut(s)	320, 326
AfiI	CCNNNNNNNGG	3 cut(s)	555, 1373, 1525
AflIII	ACRYGT	1 cut(s)	321
AgsI	TTSAA	7 cut(s)	74, 1043, 1080, 1135, 1241, 1463, 1593
AjnI	CCWGG	2 cut(s)	722, 1579
AloI	GAACNNNNNNTCC	2 cut(s)	366, 398
Alw21I	GWGCWC	2 cut(s)	1390, 1491
Alw26I	GTCTC	2 cut(s)	277, 1243
Alw44I	GTGCAC	1 cut(s)	1386
AlwI	GGATC	2 cut(s)	246, 1180
AoxI	GGCC	5 cut(s)	238, 342, 720, 1105, 1564
ApaLI	GTGCAC	1 cut(s)	1386
ApeKI	GCWGC	2 cut(s)	210, 1508
AseI	ATTAAT	1 cut(s)	1244
AspLEI	GCGC	2 cut(s)	15, 481
AspS9I	GGNCC	2 cut(s)	364, 1060
AsuC2I	CCSGG	3 cut(s)	368, 654, 706
AsuHPI	GGTGA	5 cut(s)	121, 409, 529, 626, 886
AvaII	GGWCC	2 cut(s)	364, 1060
BaeGI	GKGCMC	1 cut(s)	1390
BaeI	ACNNNNGTAYC	2 cut(s)	1076, 1109
BbsI	GAAGAC	1 cut(s)	178
Bbv12I	GWGCWC	2 cut(s)	1390, 1491
BbvI	GCAGC	2 cut(s)	222, 1495
BccI	CCATC	5 cut(s)	222, 407, 488, 683, 1314
BceAI	ACGGC	2 cut(s)	167, 1120
BcgI	CGANNNNNNTGC	2 cut(s)	1487, 1521
BciT130I	CCWGG	2 cut(s)	724, 1581
BclI	TGATCA	1 cut(s)	1279
BcnI	CCSGG	3 cut(s)	368, 654, 706
BcoDI	GTCTC	2 cut(s)	277, 1243
BfaI	CTAG	3 cut(s)	6, 107, 435
BisI	GCNGC	5 cut(s)	193, 211, 984, 1312, 1509
BlsI	GCNGC	5 cut(s)	194, 212, 985, 1313, 1510
Bme1390I	CCNGG	5 cut(s)	368, 654, 706, 724, 1581
Bme18I	GGWCC	2 cut(s)	364, 1060
BmgT120I	GGNCC	2 cut(s)	364, 1060
BmiI	GGNNCC	7 cut(s)	365, 744, 855, 1061, 1161, 1269, 1365
BmrFI	CCNGG	5 cut(s)	368, 654, 706, 724, 1581
BmrI	ACTGGG	1 cut(s)	55
BmsI	GCATC	1 cut(s)	639
BmuI	ACTGGG	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	178
BpmI	CTGGAG	1 cut(s)	1146
Bpu10I	CCTNAGC	1 cut(s)	1315
BpuEI	CTTGAG	1 cut(s)	851
BpuMI	CCSGG	3 cut(s)	368, 654, 706
Bsa29I	ATCGAT	1 cut(s)	957
BsaAI	YACGTR	1 cut(s)	324
BsaBI	GATNNNNATC	1 cut(s)	936
BsaJI	CCNNGG	3 cut(s)	653, 705, 1108
BsaWI	WCCGGW	1 cut(s)	745
BsaXI	ACNNNNNCTCC	4 cut(s)	143, 173, 458, 488
Bsc4I	CCNNNNNNNGG	3 cut(s)	555, 1373, 1525
Bse118I	RCCGGY	2 cut(s)	350, 548
Bse1I	ACTGG	2 cut(s)	61, 255
Bse3DI	GCAATG	2 cut(s)	1411, 1423
Bse8I	GATNNNNATC	1 cut(s)	936
BseBI	CCWGG	2 cut(s)	724, 1581
BseCI	ATCGAT	1 cut(s)	957
BseDI	CCNNGG	3 cut(s)	653, 705, 1108
BseGI	GGATG	5 cut(s)	93, 319, 1146, 1325, 1534
BseJI	GATNNNNATC	1 cut(s)	936
BseLI	CCNNNNNNNGG	3 cut(s)	555, 1373, 1525
BseMI	GCAATG	2 cut(s)	1411, 1423
BseMII	CTCAG	2 cut(s)	932, 1329
BseNI	ACTGG	2 cut(s)	61, 255
BseRI	GAGGAG	6 cut(s)	151, 314, 646, 659, 1235, 1481
BseSI	GKGCMC	1 cut(s)	1390
BseX3I	CGGCCG	1 cut(s)	1105
BseXI	GCAGC	2 cut(s)	222, 1495
BseYI	CCCAGC	1 cut(s)	206
Bsh1236I	CGCG	3 cut(s)	15, 195, 481
Bsh1285I	CGRYCG	1 cut(s)	1108
BshFI	GGCC	5 cut(s)	240, 344, 722, 1107, 1566
BshVI	ATCGAT	1 cut(s)	957
BsiEI	CGRYCG	1 cut(s)	1108
BsiHKAI	GWGCWC	2 cut(s)	1390, 1491
BsiSI	CCGG	6 cut(s)	351, 367, 549, 653, 705, 746
BslFI	GGGAC	2 cut(s)	445, 1073
BslI	CCNNNNNNNGG	3 cut(s)	555, 1373, 1525
BsmAI	GTCTC	2 cut(s)	277, 1243
BsmBI	CGTCTC	1 cut(s)	277
BsmFI	GGGAC	2 cut(s)	445, 1073
BsmI	GAATGC	3 cut(s)	574, 1006, 1511
BsnI	GGCC	5 cut(s)	240, 344, 722, 1107, 1566
Bsp1286I	GDGCHC	2 cut(s)	1390, 1491
Bsp143I	GATC	5 cut(s)	90, 251, 1185, 1279, 1300
BspANI	GGCC	5 cut(s)	240, 344, 722, 1107, 1566
BspCNI	CTCAG	2 cut(s)	933, 1328
BspDI	ATCGAT	1 cut(s)	957
BspFNI	CGCG	3 cut(s)	15, 195, 481
BspLI	GGNNCC	7 cut(s)	365, 744, 855, 1061, 1161, 1269, 1365
BspPI	GGATC	2 cut(s)	246, 1180
BsrBI	CCGCTC	1 cut(s)	1314
BsrDI	GCAATG	2 cut(s)	1411, 1423
BsrFI	RCCGGY	2 cut(s)	350, 548
BsrI	ACTGG	2 cut(s)	61, 255
BssAI	RCCGGY	2 cut(s)	350, 548
BssECI	CCNNGG	3 cut(s)	653, 705, 1108
BssMI	GATC	5 cut(s)	90, 251, 1185, 1279, 1300
Bst2UI	CCWGG	2 cut(s)	724, 1581
Bst4CI	ACNGT	4 cut(s)	271, 1183, 1262, 1520
Bst6I	CTCTTC	2 cut(s)	284, 287
BstBAI	YACGTR	1 cut(s)	324
BstC8I	GCNNGC	4 cut(s)	52, 352, 741, 1291
BstDEI	CTNAG	3 cut(s)	941, 1307, 1315
BstF5I	GGATG	5 cut(s)	93, 319, 1146, 1325, 1534
BstFNI	CGCG	3 cut(s)	15, 195, 481
BstHHI	GCGC	2 cut(s)	15, 481
BstKTI	GATC	5 cut(s)	93, 254, 1188, 1282, 1303
BstMAI	GTCTC	2 cut(s)	277, 1243
BstMBI	GATC	5 cut(s)	90, 251, 1185, 1279, 1300
BstMCI	CGRYCG	1 cut(s)	1108
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 32, 1385
BstNI	CCWGG	2 cut(s)	724, 1581
BstNSI	RCATGY	3 cut(s)	1051, 1293, 1404
BstSCI	CCNGG	5 cut(s)	366, 652, 704, 722, 1579
BstSLI	GKGCMC	1 cut(s)	1390
BstUI	CGCG	3 cut(s)	15, 195, 481
BstV1I	GCAGC	2 cut(s)	222, 1495
BstV2I	GAAGAC	1 cut(s)	178
BstX2I	RGATCY	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	251
BstZI	CGGCCG	1 cut(s)	1105
Bsu15I	ATCGAT	1 cut(s)	957
BsuRI	GGCC	5 cut(s)	240, 344, 722, 1107, 1566
BsuTUI	ATCGAT	1 cut(s)	957
BtsCI	GGATG	5 cut(s)	93, 319, 1146, 1325, 1534
BtsI	GCAGTG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	241
Cac8I	GCNNGC	4 cut(s)	52, 352, 741, 1291
CfoI	GCGC	2 cut(s)	15, 481
Cfr10I	RCCGGY	2 cut(s)	350, 548
Cfr13I	GGNCC	2 cut(s)	364, 1060
ClaI	ATCGAT	1 cut(s)	957
CseI	GACGC	1 cut(s)	184
CsiI	ACCWGGT	1 cut(s)	1579
Csp6I	GTAC	2 cut(s)	319, 325
CspCI	CAANNNNNGTGG	2 cut(s)	1341, 1376
CviAII	CATG	7 cut(s)	386, 974, 1048, 1290, 1294, 1370, 1401
CviQI	GTAC	2 cut(s)	319, 325
DdeI	CTNAG	3 cut(s)	941, 1307, 1315
DpnI	GATC	5 cut(s)	92, 253, 1187, 1281, 1302
DpnII	GATC	5 cut(s)	90, 251, 1185, 1279, 1300
EaeI	YGGCCR	2 cut(s)	720, 1105
EagI	CGGCCG	1 cut(s)	1105
Eam1104I	CTCTTC	2 cut(s)	284, 287
EarI	CTCTTC	2 cut(s)	284, 287
EciI	GGCGGA	3 cut(s)	179, 253, 326
EclXI	CGGCCG	1 cut(s)	1105
Eco147I	AGGCCT	2 cut(s)	344, 1566
Eco32I	GATATC	1 cut(s)	780
Eco47I	GGWCC	2 cut(s)	364, 1060
Eco52I	CGGCCG	1 cut(s)	1105
Eco57I	CTGAAG	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	1060
EcoRII	CCWGG	2 cut(s)	722, 1579
EcoRV	GATATC	1 cut(s)	780
EcoT22I	ATGCAT	2 cut(s)	1291, 1295
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	7 cut(s)	389, 977, 1051, 1293, 1297, 1373, 1404
FaqI	GGGAC	2 cut(s)	445, 1073
FatI	CATG	7 cut(s)	385, 973, 1047, 1289, 1293, 1369, 1400
FbaI	TGATCA	1 cut(s)	1279
Fnu4HI	GCNGC	5 cut(s)	193, 211, 984, 1312, 1509
FokI	GGATG	5 cut(s)	80, 326, 1153, 1332, 1541
Fsp4HI	GCNGC	5 cut(s)	193, 211, 984, 1312, 1509
FspBI	CTAG	3 cut(s)	6, 107, 435
GlaI	GCGC	2 cut(s)	14, 480
GluI	GCNGC	5 cut(s)	193, 211, 984, 1312, 1509
GsaI	CCCAGC	1 cut(s)	210
GsuI	CTGGAG	1 cut(s)	1146
HaeIII	GGCC	5 cut(s)	240, 344, 722, 1107, 1566
HapII	CCGG	6 cut(s)	351, 367, 549, 653, 705, 746
HgaI	GACGC	1 cut(s)	184
HhaI	GCGC	2 cut(s)	15, 481
Hin1II	CATG	7 cut(s)	389, 977, 1051, 1293, 1297, 1373, 1404
Hin6I	GCGC	2 cut(s)	13, 479
HinP1I	GCGC	2 cut(s)	13, 479
HincII	GTYRAC	2 cut(s)	199, 445
HindII	GTYRAC	2 cut(s)	199, 445
HindIII	AAGCTT	1 cut(s)	1332
HinfI	GANTC	3 cut(s)	932, 1114, 1449
HpaII	CCGG	6 cut(s)	351, 367, 549, 653, 705, 746
HphI	GGTGA	5 cut(s)	121, 409, 529, 626, 886
Hpy166II	GTNNAC	4 cut(s)	199, 321, 445, 1388
Hpy188I	TCNGA	4 cut(s)	942, 990, 1210, 1498
Hpy188III	TCNNGA	8 cut(s)	71, 107, 220, 830, 1163, 1189, 1277, 1317
Hpy8I	GTNNAC	4 cut(s)	199, 321, 445, 1388
Hpy99I	CGWCG	1 cut(s)	334
HpyAV	CCTTC	6 cut(s)	334, 354, 369, 478, 619, 1145
HpyCH4III	ACNGT	4 cut(s)	271, 1183, 1262, 1520
HpyCH4IV	ACGT	1 cut(s)	323
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 32, 1385
HpyF3I	CTNAG	3 cut(s)	941, 1307, 1315
HpySE526I	ACGT	1 cut(s)	323
Hsp92II	CATG	7 cut(s)	389, 977, 1051, 1293, 1297, 1373, 1404
HspAI	GCGC	2 cut(s)	13, 479
KroI	GCCGGC	1 cut(s)	350
KroNI	GCCGGC	1 cut(s)	352
Ksp22I	TGATCA	1 cut(s)	1279
Kzo9I	GATC	5 cut(s)	90, 251, 1185, 1279, 1300
LmnI	GCTCC	3 cut(s)	748, 1165, 1494
Lsp1109I	GCAGC	2 cut(s)	222, 1495
LweI	GCATC	1 cut(s)	639
MabI	ACCWGGT	1 cut(s)	1579
MaeI	CTAG	3 cut(s)	6, 107, 435
MaeII	ACGT	1 cut(s)	323
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	5 cut(s)	92, 253, 1187, 1281, 1302
MbiI	CCGCTC	1 cut(s)	1314
MboI	GATC	5 cut(s)	90, 251, 1185, 1279, 1300
MboII	GAAGA	5 cut(s)	178, 271, 304, 1295, 1340
MflI	RGATCY	1 cut(s)	251
MhlI	GDGCHC	2 cut(s)	1390, 1491
MluCI	AATT	4 cut(s)	134, 914, 1241, 1593
MlyI	GAGTC	1 cut(s)	1443
MmeI	TCCRAC	3 cut(s)	174, 1506, 1521
Mph1103I	ATGCAT	2 cut(s)	1291, 1295
MroNI	GCCGGC	1 cut(s)	350
MseI	TTAA	4 cut(s)	750, 1145, 1244, 1569
MslI	CAYNNNNRTG	3 cut(s)	287, 1374, 1416
MspI	CCGG	6 cut(s)	351, 367, 549, 653, 705, 746
MspR9I	CCNGG	5 cut(s)	368, 654, 706, 724, 1581
Mva1269I	GAATGC	3 cut(s)	574, 1006, 1511
MvaI	CCWGG	2 cut(s)	724, 1581
MvnI	CGCG	3 cut(s)	15, 195, 481
MwoI	GCNNNNNNNGC	3 cut(s)	10, 32, 1385
NaeI	GCCGGC	1 cut(s)	352
NciI	CCSGG	3 cut(s)	368, 654, 706
NdeII	GATC	5 cut(s)	90, 251, 1185, 1279, 1300
NgoMIV	GCCGGC	1 cut(s)	350
NlaIII	CATG	7 cut(s)	389, 977, 1051, 1293, 1297, 1373, 1404
NlaIV	GGNNCC	7 cut(s)	365, 744, 855, 1061, 1161, 1269, 1365
NmeAIII	GCCGAG	1 cut(s)	1133
NmuCI	GTSAC	1 cut(s)	517
NsiI	ATGCAT	2 cut(s)	1291, 1295
NspI	RCATGY	3 cut(s)	1051, 1293, 1404
PaeI	GCATGC	1 cut(s)	1293
PceI	AGGCCT	2 cut(s)	344, 1566
PctI	GAATGC	3 cut(s)	574, 1006, 1511
PdiI	GCCGGC	1 cut(s)	352
PfeI	GAWTC	2 cut(s)	932, 1114
PfoI	TCCNGGA	1 cut(s)	366
PkrI	GCNGC	5 cut(s)	194, 212, 985, 1313, 1510
PleI	GAGTC	1 cut(s)	1443
PpsI	GAGTC	1 cut(s)	1443
Ppu21I	YACGTR	1 cut(s)	324
PpuMI	RGGWCCY	1 cut(s)	1060
PshBI	ATTAAT	1 cut(s)	1244
PsiI	TTATAA	1 cut(s)	869
Psp5II	RGGWCCY	1 cut(s)	1060
Psp6I	CCWGG	2 cut(s)	722, 1579
PspFI	CCCAGC	1 cut(s)	206
PspGI	CCWGG	2 cut(s)	722, 1579
PspN4I	GGNNCC	7 cut(s)	365, 744, 855, 1061, 1161, 1269, 1365
PspPI	GGNCC	2 cut(s)	364, 1060
PspPPI	RGGWCCY	1 cut(s)	1060
PsuI	RGATCY	1 cut(s)	251
RsaI	GTAC	2 cut(s)	320, 326
RsaNI	GTAC	2 cut(s)	319, 325
RseI	CAYNNNNRTG	3 cut(s)	287, 1374, 1416
SaqAI	TTAA	4 cut(s)	750, 1145, 1244, 1569
SatI	GCNGC	5 cut(s)	193, 211, 984, 1312, 1509
Sau3AI	GATC	5 cut(s)	90, 251, 1185, 1279, 1300
Sau96I	GGNCC	2 cut(s)	364, 1060
SchI	GAGTC	1 cut(s)	1443
ScrFI	CCNGG	5 cut(s)	368, 654, 706, 724, 1581
SduI	GDGCHC	2 cut(s)	1390, 1491
SexAI	ACCWGGT	1 cut(s)	1579
SfaNI	GCATC	1 cut(s)	639
SinI	GGWCC	2 cut(s)	364, 1060
SmiMI	CAYNNNNRTG	3 cut(s)	287, 1374, 1416
SmlI	CTYRAG	1 cut(s)	830
SmoI	CTYRAG	1 cut(s)	830
SphI	GCATGC	1 cut(s)	1293
Sse9I	AATT	4 cut(s)	134, 914, 1241, 1593
SseBI	AGGCCT	2 cut(s)	344, 1566
SspI	AATATT	1 cut(s)	825
SspMI	CTAG	3 cut(s)	6, 107, 435
StuI	AGGCCT	2 cut(s)	344, 1566
StyD4I	CCNGG	5 cut(s)	366, 652, 704, 722, 1579
TaaI	ACNGT	4 cut(s)	271, 1183, 1262, 1520
TaiI	ACGT	1 cut(s)	326
TaqI	TCGA	3 cut(s)	957, 964, 1447
TasI	AATT	4 cut(s)	134, 914, 1241, 1593
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	3 cut(s)	195, 986, 1314
TfiI	GAWTC	2 cut(s)	932, 1114
Tru1I	TTAA	4 cut(s)	750, 1145, 1244, 1569
Tru9I	TTAA	4 cut(s)	750, 1145, 1244, 1569
TscAI	CASTG	1 cut(s)	248
TseFI	GTSAC	1 cut(s)	517
TseI	GCWGC	2 cut(s)	210, 1508
Tsp45I	GTSAC	1 cut(s)	517
TspDTI	ATGAA	5 cut(s)	127, 271, 305, 374, 1013
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	1 cut(s)	248
VneI	GTGCAC	1 cut(s)	1386
VpaK11BI	GGWCC	2 cut(s)	364, 1060
VspI	ATTAAT	1 cut(s)	1244
XbaI	TCTAGA	1 cut(s)	106
XceI	RCATGY	3 cut(s)	1051, 1293, 1404
XspI	CTAG	3 cut(s)	6, 107, 435
Zsp2I	ATGCAT	2 cut(s)	1291, 1295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.