Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0011921

Physical Location & Seq

Genomic Coordinates Forward (+)

18517932 .. 18519315

Gene Structure 1384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g20390.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGCCTACAATCCGCCTCTACTCATCGCTAGCTCCGCCCAACAACCGCCATCCCACTTTTCTGCTGCCGTCAATCGCAACGTTGCTCAAAGCCTGCAAAACCCAATTCCATCTCCAACAAATCCACGCCCACATTGTACACAAAGGTTTGGAGCAAGATTACTTCCTCATAACCCAGTTCATCTGCCTCTCCAACGCCCTCGCTTCCCTCTCTTACTCTGCCGCCGTCTTCTACCGCGTTCTCAGCCCCAACACCTTTCTCTGGAACTGTCTGATCAAAGGGTACTGCGAAAGGTCTGGTTTTTTGGGCATTGTTTCTCTGTTTGTTCGAATGAAGAGGGAGGAAGGCCTTCCGGATAGGTATACGTACCCGTCTCTCTTTAAGGCGTGTGCGAGTGAGGGGAGGGTAAAGGAAGGAAGGGCGATACATGGGTCGGCGGTGCGGTTGATTTGTACGGCAAGTGCAGGGAGATTGTTTGCGCTCGCAAGGTGTTTGATAGAATGTCTGAGAGAAGTGTGGTTTCTTGGACGACTATGGTTGTTGGGTATGCTAGTGTTGGGGATCTGGTGGAGGCCAACAAGCTGTTTGATCGATCAGATGCCCCAGAAAAATGTGGTGTCGTGGAATGCGATTATTAGTGGGTTTGTGAAGATGGGGGATTTGGTTAATGCTAGGAGGATCTTTGATCATATGCCTGACAAGGATGTGGTTTCTTGTACTACTATGATTGATGGATATGCCAAGTACGGAGATATGGCGTCTGCGAGATTTTTGTTTGAGCAAGCCCCGAATATAGATATCGTTGCGTGGTCAGCATTGATATCAGGGTATGCTCAAAATGGTCAACCTAACGAGGCTGTAAAGATATTTCAAGAAATGAGTACGAAGAATGTTAAGCCCGATGAGTTTATAATGGTGAGCTTGATGTCAGCTTGTTCCCAAGTGGGCTGCTTGCAGGTGGCTAAATGGGTTGATTCTTACCTGAGCCAGAGCTCCGTTGATGTTTGTCAGGCTCATGTTCTCGCAGCTCTGATTAACATGAATGCAATGTGTGGGAATATGGAAAGAGCAACACGTTTGTTTGAAGAGATGCCTAAGCGGGACTTGATTTCGTATTGTTCTATGATACAAGGGTTGTCAATTAATGGTCAAGGGGGTCAGGCTGTTGACCTCTTCAGACAGATGCTAAATGAAGGTTTGGCTCCGGATAAGGTTGCTTTTACAGTCATCCTGACAGTTTGTAGTCGGTCAGGGCTTGTTGAGGAGGGTTGGCACTTCTTTGAATCATTGAGACATAAGTACGGTTTAATACCCTCTCCTGATCGATTATGCATGTATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

448

Amino Acids

50.19

Weight (kDa)

8.6

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37570 AT5G37570
fragaria_vesca	FvH4_6g19660
malus_domestica	MD02G1238600.v1.1 MD07G1078100.v1.1
prunus_persica	Prupe.1G026700_v2.0.a1 Prupe.8G050400_v2.0.a1
pyrus_communis	pycom02g20390 pycom07g06180
rosa_chinensis	RchiOBHm_Chr3g0475001
rosa_laevigata	RLG00000023872
rosa_multiflora	Rmu_sc0003093.1_g000009
rosa_roxburghii	Rroxscaffold_6G00406640
rosa_rugosa	Rorug03G0146000
rosa_samantha	Rh3AG195600 Rh3BG225800 Rh3CG220600 Rh3DG221100
rosa_wichuraiana	Rw3G017810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	911
AarI	CACCTGC	1 cut(s)	946
Acc36I	ACCTGC	1 cut(s)	946
AccI	GTMKAC	1 cut(s)	362
AccII	CGCG	1 cut(s)	237
AccIII	TCCGGA	2 cut(s)	352, 1204
AciI	CCGC	8 cut(s)	13, 35, 46, 222, 235, 437, 442, 1099
AclI	AACGTT	1 cut(s)	80
AclWI	GGATC	2 cut(s)	569, 686
AcuI	CTGAAG	1 cut(s)	1159
AcyI	GRCGYC	1 cut(s)	758
AfaI	GTAC	8 cut(s)	138, 284, 368, 454, 718, 746, 883, 1301
AfiI	CCNNNNNNNGG	1 cut(s)	261
AflIII	ACRYGT	1 cut(s)	1073
AgsI	TTSAA	3 cut(s)	872, 1085, 1283
AluBI	AGCT	6 cut(s)	32, 582, 921, 932, 993, 1028
AluI	AGCT	6 cut(s)	32, 582, 921, 932, 993, 1028
Alw21I	GWGCWC	1 cut(s)	995
Alw26I	GTCTC	2 cut(s)	378, 1285
AlwI	GGATC	2 cut(s)	569, 686
Aor13HI	TCCGGA	2 cut(s)	352, 1204
AoxI	GGCC	2 cut(s)	346, 572
ApeKI	GCWGC	3 cut(s)	64, 948, 1025
AseI	ATTAAT	1 cut(s)	1143
Asp700I	GAANNNNTTC	1 cut(s)	348
AspLEI	GCGC	1 cut(s)	481
AsuHPI	GGTGA	1 cut(s)	928
AsuII	TTCGAA	1 cut(s)	328
AsuNHI	GCTAGC	1 cut(s)	28
BaeI	ACNNNNGTAYC	4 cut(s)	416, 449, 1118, 1151
BanII	GRGCYC	1 cut(s)	995
BbsI	GAAGAC	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	995
BbvI	GCAGC	3 cut(s)	51, 935, 1037
BccI	CCATC	4 cut(s)	57, 117, 646, 725
BceAI	ACGGC	3 cut(s)	52, 209, 471
BclI	TGATCA	2 cut(s)	273, 685
BcoDI	GTCTC	2 cut(s)	378, 1285
BfaI	CTAG	3 cut(s)	29, 551, 672
BfuAI	ACCTGC	1 cut(s)	946
BisI	GCNGC	4 cut(s)	65, 222, 949, 1026
BlsI	GCNGC	4 cut(s)	66, 223, 950, 1027
BmiI	GGNNCC	1 cut(s)	1203
BmrI	ACTGGG	1 cut(s)	169
BmsI	GCATC	3 cut(s)	588, 1080, 1173
BmtI	GCTAGC	1 cut(s)	32
BmuI	ACTGGG	1 cut(s)	169
BpiI	GAAGAC	1 cut(s)	220
Bpu10I	CCTNAGC	2 cut(s)	983, 1095
Bpu14I	TTCGAA	1 cut(s)	328
Bsa29I	ATCGAT	2 cut(s)	591, 1324
BsaAI	YACGTR	1 cut(s)	366
BsaHI	GRCGYC	1 cut(s)	758
BsaWI	WCCGGW	2 cut(s)	352, 1204
Bsc4I	CCNNNNNNNGG	1 cut(s)	261
Bse1I	ACTGG	1 cut(s)	175
Bse3DI	GCAATG	1 cut(s)	1053
BseAI	TCCGGA	2 cut(s)	352, 1204
BseCI	ATCGAT	2 cut(s)	591, 1324
BseGI	GGATG	3 cut(s)	49, 709, 1227
BseLI	CCNNNNNNNGG	1 cut(s)	261
BseMI	GCAATG	1 cut(s)	1053
BseMII	CTCAG	3 cut(s)	256, 497, 974
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	1 cut(s)	1277
BseXI	GCAGC	3 cut(s)	51, 935, 1037
BsgI	GTGCAG	1 cut(s)	483
Bsh1236I	CGCG	1 cut(s)	237
BshFI	GGCC	2 cut(s)	348, 574
BshVI	ATCGAT	2 cut(s)	591, 1324
BsiHKAI	GWGCWC	1 cut(s)	995
BsiSI	CCGG	2 cut(s)	353, 1205
BslFI	GGGAC	1 cut(s)	1115
BslI	CCNNNNNNNGG	1 cut(s)	261
BsmAI	GTCTC	2 cut(s)	378, 1285
BsmBI	CGTCTC	1 cut(s)	378
BsmFI	GGGAC	1 cut(s)	1115
BsmI	GAATGC	2 cut(s)	631, 1048
BsnI	GGCC	2 cut(s)	348, 574
Bsp119I	TTCGAA	1 cut(s)	328
Bsp1286I	GDGCHC	1 cut(s)	995
Bsp13I	TCCGGA	2 cut(s)	352, 1204
Bsp1407I	TGTACA	1 cut(s)	136
Bsp143I	GATC	7 cut(s)	273, 561, 588, 592, 678, 685, 1321
BspACI	CCGC	8 cut(s)	13, 35, 46, 222, 235, 437, 442, 1099
BspANI	GGCC	2 cut(s)	348, 574
BspCNI	CTCAG	3 cut(s)	255, 498, 975
BspDI	ATCGAT	2 cut(s)	591, 1324
BspEI	TCCGGA	2 cut(s)	352, 1204
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	1203
BspMI	ACCTGC	1 cut(s)	946
BspOI	GCTAGC	1 cut(s)	32
BspPI	GGATC	2 cut(s)	569, 686
BspT104I	TTCGAA	1 cut(s)	328
BsrDI	GCAATG	1 cut(s)	1053
BsrGI	TGTACA	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	175
BssMI	GATC	7 cut(s)	273, 561, 588, 592, 678, 685, 1321
BssNAI	GTATAC	1 cut(s)	363
BssNI	GRCGYC	1 cut(s)	758
Bst1107I	GTATAC	1 cut(s)	363
Bst4CI	ACNGT	4 cut(s)	269, 1225, 1237, 1304
Bst6I	CTCTTC	3 cut(s)	329, 1080, 1178
BstACI	GRCGYC	1 cut(s)	758
BstAUI	TGTACA	1 cut(s)	136
BstBAI	YACGTR	1 cut(s)	366
BstBI	TTCGAA	1 cut(s)	328
BstC8I	GCNNGC	5 cut(s)	30, 94, 483, 783, 953
BstDEI	CTNAG	4 cut(s)	242, 506, 983, 1095
BstF5I	GGATG	3 cut(s)	49, 709, 1227
BstFNI	CGCG	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	7 cut(s)	276, 564, 591, 595, 681, 688, 1324
BstMAI	GTCTC	2 cut(s)	378, 1285
BstMBI	GATC	7 cut(s)	273, 561, 588, 592, 678, 685, 1321
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 243, 812
BstNSI	RCATGY	1 cut(s)	1336
BstSNI	TACGTA	1 cut(s)	366
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	3 cut(s)	51, 935, 1037
BstV2I	GAAGAC	1 cut(s)	220
BstX2I	RGATCY	2 cut(s)	561, 678
BstYI	RGATCY	2 cut(s)	561, 678
BstZ17I	GTATAC	1 cut(s)	363
Bsu15I	ATCGAT	2 cut(s)	591, 1324
BsuRI	GGCC	2 cut(s)	348, 574
BsuTUI	ATCGAT	2 cut(s)	591, 1324
BtgZI	GCGATG	1 cut(s)	9
BtsCI	GGATG	3 cut(s)	49, 709, 1227
BveI	ACCTGC	1 cut(s)	946
Cac8I	GCNNGC	5 cut(s)	30, 94, 483, 783, 953
CfoI	GCGC	1 cut(s)	481
ClaI	ATCGAT	2 cut(s)	591, 1324
CseI	GACGC	1 cut(s)	747
Csp6I	GTAC	8 cut(s)	137, 283, 367, 453, 717, 745, 882, 1300
CviAII	CATG	4 cut(s)	428, 1016, 1039, 1333
CviQI	GTAC	8 cut(s)	137, 283, 367, 453, 717, 745, 882, 1300
DdeI	CTNAG	4 cut(s)	242, 506, 983, 1095
DpnI	GATC	7 cut(s)	275, 563, 590, 594, 680, 687, 1323
DpnII	GATC	7 cut(s)	273, 561, 588, 592, 678, 685, 1321
Eam1104I	CTCTTC	3 cut(s)	329, 1080, 1178
EarI	CTCTTC	3 cut(s)	329, 1080, 1178
EciI	GGCGGA	1 cut(s)	24
Ecl136II	GAGCTC	1 cut(s)	993
Eco105I	TACGTA	1 cut(s)	366
Eco147I	AGGCCT	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	995
Eco32I	GATATC	2 cut(s)	799, 822
Eco53kI	GAGCTC	1 cut(s)	993
Eco57I	CTGAAG	1 cut(s)	1159
EcoICRI	GAGCTC	1 cut(s)	993
EcoRV	GATATC	2 cut(s)	799, 822
EcoT22I	ATGCAT	1 cut(s)	1334
EcoT38I	GRGCYC	1 cut(s)	995
Esp3I	CGTCTC	1 cut(s)	378
FaeI	CATG	4 cut(s)	431, 1019, 1042, 1336
FalI	AAGNNNNNCTT	2 cut(s)	1088, 1120
FaqI	GGGAC	1 cut(s)	1115
FatI	CATG	4 cut(s)	427, 1015, 1038, 1332
FauI	CCCGC	1 cut(s)	1092
FauNDI	CATATG	1 cut(s)	690
FbaI	TGATCA	2 cut(s)	273, 685
FblI	GTMKAC	1 cut(s)	362
Fnu4HI	GCNGC	4 cut(s)	65, 222, 949, 1026
FokI	GGATG	3 cut(s)	36, 716, 1214
FriOI	GRGCYC	1 cut(s)	995
Fsp4HI	GCNGC	4 cut(s)	65, 222, 949, 1026
FspBI	CTAG	3 cut(s)	29, 551, 672
GlaI	GCGC	1 cut(s)	480
GluI	GCNGC	4 cut(s)	65, 222, 949, 1026
HaeIII	GGCC	2 cut(s)	348, 574
HapII	CCGG	2 cut(s)	353, 1205
HgaI	GACGC	1 cut(s)	747
HhaI	GCGC	1 cut(s)	481
Hin1I	GRCGYC	1 cut(s)	758
Hin1II	CATG	4 cut(s)	431, 1019, 1042, 1336
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HincII	GTYRAC	2 cut(s)	845, 1168
HindII	GTYRAC	2 cut(s)	845, 1168
HinfI	GANTC	2 cut(s)	974, 1283
HpaII	CCGG	2 cut(s)	353, 1205
HphI	GGTGA	1 cut(s)	928
Hpy166II	GTNNAC	4 cut(s)	139, 363, 845, 1168
Hpy188I	TCNGA	5 cut(s)	273, 507, 597, 1032, 1178
Hpy188III	TCNNGA	6 cut(s)	262, 353, 872, 1205, 1231, 1319
Hpy8I	GTNNAC	4 cut(s)	139, 363, 845, 1168
HpyAV	CCTTC	5 cut(s)	338, 359, 407, 411, 1187
HpyCH4III	ACNGT	4 cut(s)	269, 1225, 1237, 1304
HpyCH4IV	ACGT	3 cut(s)	80, 365, 1075
HpyCH4V	TGCA	5 cut(s)	96, 464, 955, 1046, 1332
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 243, 812
HpyF3I	CTNAG	4 cut(s)	242, 506, 983, 1095
HpySE526I	ACGT	3 cut(s)	80, 365, 1075
Hsp92I	GRCGYC	1 cut(s)	758
Hsp92II	CATG	4 cut(s)	431, 1019, 1042, 1336
HspAI	GCGC	1 cut(s)	479
Kpn2I	TCCGGA	2 cut(s)	352, 1204
Ksp22I	TGATCA	2 cut(s)	273, 685
Kzo9I	GATC	7 cut(s)	273, 561, 588, 592, 678, 685, 1321
LmnI	GCTCC	4 cut(s)	37, 151, 998, 1207
Lsp1109I	GCAGC	3 cut(s)	51, 935, 1037
LweI	GCATC	3 cut(s)	588, 1080, 1173
MaeI	CTAG	3 cut(s)	29, 551, 672
MaeII	ACGT	3 cut(s)	80, 365, 1075
MalI	GATC	7 cut(s)	275, 563, 590, 594, 680, 687, 1323
MboI	GATC	7 cut(s)	273, 561, 588, 592, 678, 685, 1321
MboII	GAAGA	6 cut(s)	220, 346, 661, 898, 1097, 1165
MflI	RGATCY	2 cut(s)	561, 678
MhlI	GDGCHC	1 cut(s)	995
MluCI	AATT	2 cut(s)	104, 1140
MmeI	TCCRAC	2 cut(s)	139, 216
Mph1103I	ATGCAT	1 cut(s)	1334
MroI	TCCGGA	2 cut(s)	352, 1204
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	6 cut(s)	381, 666, 894, 1035, 1143, 1307
MspI	CCGG	2 cut(s)	353, 1205
Mva1269I	GAATGC	2 cut(s)	631, 1048
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	3 cut(s)	34, 243, 812
NdeI	CATATG	1 cut(s)	690
NdeII	GATC	7 cut(s)	273, 561, 588, 592, 678, 685, 1321
NheI	GCTAGC	1 cut(s)	28
NlaIII	CATG	4 cut(s)	431, 1019, 1042, 1336
NlaIV	GGNNCC	1 cut(s)	1203
NsiI	ATGCAT	1 cut(s)	1334
NspI	RCATGY	1 cut(s)	1336
NspV	TTCGAA	1 cut(s)	328
PaqCI	CACCTGC	1 cut(s)	946
PceI	AGGCCT	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	1 cut(s)	626
PctI	GAATGC	2 cut(s)	631, 1048
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	974, 1283
PkrI	GCNGC	4 cut(s)	66, 223, 950, 1027
Ppu21I	YACGTR	1 cut(s)	366
PshBI	ATTAAT	1 cut(s)	1143
PsiI	TTATAA	1 cut(s)	911
Psp124BI	GAGCTC	1 cut(s)	995
Psp1406I	AACGTT	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	1203
PsuI	RGATCY	2 cut(s)	561, 678
RsaI	GTAC	8 cut(s)	138, 284, 368, 454, 718, 746, 883, 1301
RsaNI	GTAC	8 cut(s)	137, 283, 367, 453, 717, 745, 882, 1300
SacI	GAGCTC	1 cut(s)	995
SaqAI	TTAA	6 cut(s)	381, 666, 894, 1035, 1143, 1307
SatI	GCNGC	4 cut(s)	65, 222, 949, 1026
Sau3AI	GATC	7 cut(s)	273, 561, 588, 592, 678, 685, 1321
SduI	GDGCHC	1 cut(s)	995
SfaNI	GCATC	3 cut(s)	588, 1080, 1173
SfuI	TTCGAA	1 cut(s)	328
SnaBI	TACGTA	1 cut(s)	366
Sse9I	AATT	2 cut(s)	104, 1140
SseBI	AGGCCT	1 cut(s)	348
SsiI	CCGC	8 cut(s)	13, 35, 46, 222, 235, 437, 442, 1099
SspMI	CTAG	3 cut(s)	29, 551, 672
SstI	GAGCTC	1 cut(s)	995
StuI	AGGCCT	1 cut(s)	348
TaaI	ACNGT	4 cut(s)	269, 1225, 1237, 1304
TaiI	ACGT	3 cut(s)	83, 368, 1078
TaqI	TCGA	3 cut(s)	328, 591, 1324
TaqII	GACCGA	1 cut(s)	1236
TasI	AATT	2 cut(s)	104, 1140
TatI	WGTACW	2 cut(s)	136, 716
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	2 cut(s)	974, 1283
Tru1I	TTAA	6 cut(s)	381, 666, 894, 1035, 1143, 1307
Tru9I	TTAA	6 cut(s)	381, 666, 894, 1035, 1143, 1307
TseI	GCWGC	3 cut(s)	64, 948, 1025
TspDTI	ATGAA	4 cut(s)	169, 347, 1055, 1206
TspGWI	ACGGA	2 cut(s)	762, 985
VspI	ATTAAT	1 cut(s)	1143
XceI	RCATGY	1 cut(s)	1336
XmiI	GTMKAC	1 cut(s)	362
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	3 cut(s)	29, 551, 672
Zsp2I	ATGCAT	1 cut(s)	1334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.