Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0011921

Physical Location & Seq

Genomic Coordinates Forward (+)

28656662 .. 28658783

Gene Structure 2122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1238600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1680 bp

ATGCCTTCAATCCGCCTCTACTCATCGCTAGCTCCGCCCAACAGCCGCCGTCCCACTTTTCTGCTGCCGTCAATCGCAACGTTGCTCAAAGCCTGCAAAACCCAATCCCATCTCCAACAAATCCACGCCCACATTGTACACAAAGGTTTGGAGCAAGATTACTTCCTCATAACCCAGTTCATCTGCCTCTCCAACGCCCTCGCTTCCCTCTCTTACTCTGCCGCCGTCTTCGACCGCGTTCTCAGCCCAAACACCTTTCTCTGGAACTGTCTGATCAAAGGGTACTGCGAAAGGTCTGGTTTTTTGGGCATTGTTTCTCTGTTTGTTCGAATGAAGAGGGAGGAAGGCCTTCCGGATAGGTATACGTACCCGTCTCTTTTTAAGGCGTGTGCGAGTGAGGGGAGGGTCTGGGAAGGAAGGGCGATACATGGGTCGGCGGTGCGGTGTGGGGTTGATGGGGATGTGTTTGTAGGCACCAGTTTGATTGATTTGTACGGTAAGTGCAAGGAGATTGTTTGCGCTCGCAAGGTGTTTGATAGAATGTCTGAGAGAAGTGTGGTTTCTTGGACGACTATGGTTGTTGGGTATGCTAGTGTTGGGGATTTGGTGGAGGCCAACAAGTTGTTTGATCAGATGCCCCAGAAAAATGTGGTGTCGTGGAATGCGATTATTAGTGGGTTTGTGAAGATGGGGGATTTGGTTAATGCTAGGAGGATCTTTGATCATATGCCTGACAAGAATGTGGTTTCTTATACTACTATGATTGATGGATATGCCAAGTACGGAGATATGGCGTCTGCGAGATTTTTGTTTGAGCAAGCCCCGAATAAAGATATCGTTGCGTGGTCAGCATTGATATCAGGGTATGCTCAAAATGGTCAACCTAACGAGGTCGTAAAGATATTTCAAGAAATGAGTACGAAGAATGTTAAGCCTGATGAGTTTATAATGGTGAGCTTGATGTCAGCTTGTTCCCAAGTGGGCTGCTTGCAGGTGGCTAAATGGGTTGATTCTTACCTGAGCCAGAGCTCCGTTGATGTTCGCCAGGCTCATGTTCTCGCAGCTCTGATTAACATGAATGCAATGTGTGGGAATATGGAAAGAGCAACACGTTTGTTTGAAGAGATGCCTAAGCGGGACTTGATTTCGTATTGTTCTATGATACAAGGGTTGTCGATTAATGGTCAAGGGGGTCAGGCTGTTGACCTCTTCAGACAGATGCTAAATGAAGGTTTGGCTCCGGATGAGGTTGCTTTTACAGTCATCCTGACAGTTTGTAGTCGGTCAGGGCTTGTTGAGGAGGGTTGGCACTTCTTTGAATCAATGAGACATAAGTACGGTTTAATACCCTCTCCTGATCATTATGCATGTATCATTAGTCTTCTTAGCCGGTCAGGACGGTTAAAATCAGCTTATGATCTTCTACGATCAATGCCTGTGGAGCCTCATGCTGGTGCTTGGGGTGCACTACTTTCAGCCTGTAAGCTAAACTGCAATGCTGAGCTAGGAGAGTTAGTTGCTCATCGACTTTTTGAGCTTGAACCCCAAAATCCTGGTAATTATGTGCTTTTGTCCGATATCTATGCAGAAACAGGCCGCTGGTTTGATGTTTCTGCAGTGAGGACCAAAATGGAAGAGCGAGGGATTAAAAAGATACCCGGTATCAGTTATTTAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

560

Amino Acids

62.29

Weight (kDa)

8.06

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	83 - 131	5.8e-10	PPR repeat family
PPR	PF01535	187 - 217	8.4e-06	PPR repeat
PPR_2	PF13041	215 - 248	2.6e-06	PPR repeat family
PPR_2	PF13041	277 - 324	2.5e-10	PPR repeat family
PPR	PF01535	280 - 309	1.3e-07	PPR repeat
PPR_2	PF13041	380 - 427	7.2e-09	PPR repeat family
E_motif	PF20431	499 - 557	1.8e-21	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37570 AT5G37570
fragaria_vesca	FvH4_6g19660
malus_domestica	MD02G1238600.v1.1 MD07G1078100.v1.1
prunus_persica	Prupe.1G026700_v2.0.a1 Prupe.8G050400_v2.0.a1
pyrus_communis	pycom02g20390 pycom07g06180
rosa_chinensis	RchiOBHm_Chr3g0475001
rosa_laevigata	RLG00000023872
rosa_multiflora	Rmu_sc0003093.1_g000009
rosa_roxburghii	Rroxscaffold_6G00406640
rosa_rugosa	Rorug03G0146000
rosa_samantha	Rh3AG195600 Rh3BG225800 Rh3CG220600 Rh3DG221100
rosa_wichuraiana	Rw3G017810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	947
AarI	CACCTGC	1 cut(s)	982
Acc36I	ACCTGC	1 cut(s)	982
AccB1I	GGYRCC	1 cut(s)	473
AccI	GTMKAC	1 cut(s)	362
AccII	CGCG	1 cut(s)	237
AccIII	TCCGGA	2 cut(s)	352, 1240
AciI	CCGC	9 cut(s)	13, 35, 46, 222, 235, 437, 442, 1135, 1597
AclI	AACGTT	1 cut(s)	80
AclWI	GGATC	1 cut(s)	722
AcuI	CTGAAG	1 cut(s)	1195
AcyI	GRCGYC	1 cut(s)	794
AfaI	GTAC	7 cut(s)	138, 284, 368, 494, 782, 919, 1337
AfiI	CCNNNNNNNGG	2 cut(s)	261, 1451
AflIII	ACRYGT	1 cut(s)	1109
AgsI	TTSAA	5 cut(s)	9, 908, 1121, 1319, 1541
AjnI	CCWGG	2 cut(s)	1044, 1552
AluBI	AGCT	9 cut(s)	32, 957, 968, 1029, 1064, 1412, 1486, 1504, 1537
AluI	AGCT	9 cut(s)	32, 957, 968, 1029, 1064, 1412, 1486, 1504, 1537
Alw21I	GWGCWC	2 cut(s)	1031, 1468
Alw26I	GTCTC	2 cut(s)	378, 1321
Alw44I	GTGCAC	1 cut(s)	1464
AlwI	GGATC	1 cut(s)	722
Aor13HI	TCCGGA	2 cut(s)	352, 1240
AoxI	GGCC	3 cut(s)	346, 612, 1594
ApaLI	GTGCAC	1 cut(s)	1464
ApeKI	GCWGC	3 cut(s)	64, 984, 1061
AseI	ATTAAT	1 cut(s)	1179
Asp700I	GAANNNNTTC	1 cut(s)	348
AspLEI	GCGC	1 cut(s)	521
AspS9I	GGNCC	1 cut(s)	1623
AsuC2I	CCSGG	1 cut(s)	1659
AsuHPI	GGTGA	1 cut(s)	964
AsuII	TTCGAA	1 cut(s)	328
AsuNHI	GCTAGC	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	1623
BaeGI	GKGCMC	1 cut(s)	1468
BaeI	ACNNNNGTAYC	4 cut(s)	416, 449, 1154, 1187
BanI	GGYRCC	1 cut(s)	473
BanII	GRGCYC	1 cut(s)	1031
BbsI	GAAGAC	2 cut(s)	220, 1373
Bbv12I	GWGCWC	2 cut(s)	1031, 1468
BbvI	GCAGC	3 cut(s)	51, 971, 1073
BccI	CCATC	4 cut(s)	117, 449, 682, 761
BceAI	ACGGC	3 cut(s)	33, 52, 209
BcgI	CGANNNNNNTGC	2 cut(s)	1565, 1599
BciT130I	CCWGG	2 cut(s)	1046, 1554
BclI	TGATCA	4 cut(s)	273, 628, 721, 1357
BcnI	CCSGG	1 cut(s)	1659
BcoDI	GTCTC	2 cut(s)	378, 1321
BfaI	CTAG	4 cut(s)	29, 591, 708, 1505
BfmI	CTRYAG	1 cut(s)	1614
BfuAI	ACCTGC	1 cut(s)	982
BisI	GCNGC	6 cut(s)	46, 65, 222, 985, 1062, 1597
BlpI	GCTNAGC	1 cut(s)	1500
BlsI	GCNGC	6 cut(s)	47, 66, 223, 986, 1063, 1598
Bme1390I	CCNGG	3 cut(s)	1046, 1554, 1659
Bme18I	GGWCC	1 cut(s)	1623
BmgT120I	GGNCC	1 cut(s)	1623
BmiI	GGNNCC	3 cut(s)	475, 1239, 1443
BmrFI	CCNGG	3 cut(s)	1046, 1554, 1659
BmrI	ACTGGG	1 cut(s)	169
BmsI	GCATC	3 cut(s)	624, 1116, 1209
BmtI	GCTAGC	1 cut(s)	32
BmuI	ACTGGG	1 cut(s)	169
BpiI	GAAGAC	2 cut(s)	220, 1373
Bpu10I	CCTNAGC	2 cut(s)	1019, 1131
Bpu1102I	GCTNAGC	1 cut(s)	1500
Bpu14I	TTCGAA	1 cut(s)	328
BpuMI	CCSGG	1 cut(s)	1659
BsaAI	YACGTR	1 cut(s)	366
BsaHI	GRCGYC	1 cut(s)	794
BsaWI	WCCGGW	2 cut(s)	352, 1240
BsaXI	ACNNNNNCTCC	2 cut(s)	1500, 1530
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 1451
Bse118I	RCCGGY	1 cut(s)	1389
Bse1I	ACTGG	2 cut(s)	175, 477
Bse3DI	GCAATG	2 cut(s)	1089, 1501
BseAI	TCCGGA	2 cut(s)	352, 1240
BseBI	CCWGG	2 cut(s)	1046, 1554
BseGI	GGATG	3 cut(s)	466, 1249, 1263
BseLI	CCNNNNNNNGG	2 cut(s)	261, 1451
BseMI	GCAATG	2 cut(s)	1089, 1501
BseMII	CTCAG	4 cut(s)	256, 537, 1010, 1491
BseNI	ACTGG	2 cut(s)	175, 477
BseRI	GAGGAG	1 cut(s)	1313
BseSI	GKGCMC	1 cut(s)	1468
BseXI	GCAGC	3 cut(s)	51, 971, 1073
Bsh1236I	CGCG	1 cut(s)	237
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	3 cut(s)	348, 614, 1596
BshNI	GGYRCC	1 cut(s)	473
BsiEI	CGRYCG	1 cut(s)	235
BsiHKAI	GWGCWC	2 cut(s)	1031, 1468
BsiSI	CCGG	4 cut(s)	353, 1241, 1390, 1659
BslFI	GGGAC	2 cut(s)	36, 1151
BslI	CCNNNNNNNGG	2 cut(s)	261, 1451
BsmAI	GTCTC	2 cut(s)	378, 1321
BsmBI	CGTCTC	1 cut(s)	378
BsmFI	GGGAC	2 cut(s)	36, 1151
BsmI	GAATGC	2 cut(s)	667, 1084
BsnI	GGCC	3 cut(s)	348, 614, 1596
Bsp119I	TTCGAA	1 cut(s)	328
Bsp1286I	GDGCHC	2 cut(s)	1031, 1468
Bsp13I	TCCGGA	2 cut(s)	352, 1240
Bsp1407I	TGTACA	1 cut(s)	136
Bsp143I	GATC	7 cut(s)	273, 628, 714, 721, 1357, 1417, 1427
Bsp1720I	GCTNAGC	1 cut(s)	1500
BspACI	CCGC	9 cut(s)	13, 35, 46, 222, 235, 437, 442, 1135, 1597
BspANI	GGCC	3 cut(s)	348, 614, 1596
BspCNI	CTCAG	4 cut(s)	255, 538, 1011, 1492
BspEI	TCCGGA	2 cut(s)	352, 1240
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	3 cut(s)	475, 1239, 1443
BspMAI	CTGCAG	1 cut(s)	1618
BspMI	ACCTGC	1 cut(s)	982
BspOI	GCTAGC	1 cut(s)	32
BspPI	GGATC	1 cut(s)	722
BspQI	GCTCTTC	1 cut(s)	1629
BspT104I	TTCGAA	1 cut(s)	328
BspT107I	GGYRCC	1 cut(s)	473
BsrDI	GCAATG	2 cut(s)	1089, 1501
BsrFI	RCCGGY	1 cut(s)	1389
BsrGI	TGTACA	1 cut(s)	136
BsrI	ACTGG	2 cut(s)	175, 477
BssAI	RCCGGY	1 cut(s)	1389
BssMI	GATC	7 cut(s)	273, 628, 714, 721, 1357, 1417, 1427
BssNAI	GTATAC	1 cut(s)	363
BssNI	GRCGYC	1 cut(s)	794
Bst1107I	GTATAC	1 cut(s)	363
Bst2UI	CCWGG	2 cut(s)	1046, 1554
Bst4CI	ACNGT	6 cut(s)	269, 497, 1261, 1273, 1340, 1401
Bst6I	CTCTTC	4 cut(s)	329, 1116, 1214, 1629
BstACI	GRCGYC	1 cut(s)	794
BstAUI	TGTACA	1 cut(s)	136
BstBAI	YACGTR	1 cut(s)	366
BstBI	TTCGAA	1 cut(s)	328
BstC8I	GCNNGC	5 cut(s)	30, 94, 523, 819, 989
BstDEI	CTNAG	6 cut(s)	242, 546, 1019, 1131, 1385, 1500
BstF5I	GGATG	3 cut(s)	466, 1249, 1263
BstFNI	CGCG	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	521
BstKTI	GATC	7 cut(s)	276, 631, 717, 724, 1360, 1420, 1430
BstMAI	GTCTC	2 cut(s)	378, 1321
BstMBI	GATC	7 cut(s)	273, 628, 714, 721, 1357, 1417, 1427
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	5 cut(s)	34, 243, 848, 1441, 1463
BstNI	CCWGG	2 cut(s)	1046, 1554
BstNSI	RCATGY	1 cut(s)	1371
BstSCI	CCNGG	3 cut(s)	1044, 1552, 1657
BstSFI	CTRYAG	1 cut(s)	1614
BstSLI	GKGCMC	1 cut(s)	1468
BstSNI	TACGTA	1 cut(s)	366
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	3 cut(s)	51, 971, 1073
BstV2I	GAAGAC	2 cut(s)	220, 1373
BstX2I	RGATCY	1 cut(s)	714
BstXI	CCANNNNNNTGG	1 cut(s)	1553
BstYI	RGATCY	1 cut(s)	714
BstZ17I	GTATAC	1 cut(s)	363
BsuRI	GGCC	3 cut(s)	348, 614, 1596
BtgZI	GCGATG	1 cut(s)	9
BtsCI	GGATG	3 cut(s)	466, 1249, 1263
BtsI	GCAGTG	1 cut(s)	1623
BtsIMutI	CAGTG	1 cut(s)	1623
BveI	ACCTGC	1 cut(s)	982
Cac8I	GCNNGC	5 cut(s)	30, 94, 523, 819, 989
CfoI	GCGC	1 cut(s)	521
Cfr10I	RCCGGY	1 cut(s)	1389
Cfr13I	GGNCC	1 cut(s)	1623
CseI	GACGC	1 cut(s)	783
Csp6I	GTAC	7 cut(s)	137, 283, 367, 493, 781, 918, 1336
CspCI	CAANNNNNGTGG	2 cut(s)	1419, 1454
CviAII	CATG	5 cut(s)	428, 1052, 1075, 1368, 1448
CviQI	GTAC	7 cut(s)	137, 283, 367, 493, 781, 918, 1336
DdeI	CTNAG	6 cut(s)	242, 546, 1019, 1131, 1385, 1500
DpnI	GATC	7 cut(s)	275, 630, 716, 723, 1359, 1419, 1429
DpnII	GATC	7 cut(s)	273, 628, 714, 721, 1357, 1417, 1427
Eam1104I	CTCTTC	4 cut(s)	329, 1116, 1214, 1629
EarI	CTCTTC	4 cut(s)	329, 1116, 1214, 1629
EciI	GGCGGA	1 cut(s)	24
Ecl136II	GAGCTC	1 cut(s)	1029
Eco105I	TACGTA	1 cut(s)	366
Eco147I	AGGCCT	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	1031
Eco32I	GATATC	3 cut(s)	835, 858, 1579
Eco47I	GGWCC	1 cut(s)	1623
Eco53kI	GAGCTC	1 cut(s)	1029
Eco57I	CTGAAG	1 cut(s)	1195
EcoICRI	GAGCTC	1 cut(s)	1029
EcoRII	CCWGG	2 cut(s)	1044, 1552
EcoRV	GATATC	3 cut(s)	835, 858, 1579
EcoT22I	ATGCAT	1 cut(s)	1369
EcoT38I	GRGCYC	1 cut(s)	1031
Esp3I	CGTCTC	1 cut(s)	378
FaeI	CATG	5 cut(s)	431, 1055, 1078, 1371, 1451
FalI	AAGNNNNNCTT	2 cut(s)	1124, 1156
FaqI	GGGAC	2 cut(s)	36, 1151
FatI	CATG	5 cut(s)	427, 1051, 1074, 1367, 1447
FauI	CCCGC	1 cut(s)	1128
FauNDI	CATATG	1 cut(s)	726
FbaI	TGATCA	4 cut(s)	273, 628, 721, 1357
FblI	GTMKAC	1 cut(s)	362
Fnu4HI	GCNGC	6 cut(s)	46, 65, 222, 985, 1062, 1597
FokI	GGATG	3 cut(s)	473, 1250, 1256
FriOI	GRGCYC	1 cut(s)	1031
Fsp4HI	GCNGC	6 cut(s)	46, 65, 222, 985, 1062, 1597
FspBI	CTAG	4 cut(s)	29, 591, 708, 1505
GlaI	GCGC	1 cut(s)	520
GluI	GCNGC	6 cut(s)	46, 65, 222, 985, 1062, 1597
HaeIII	GGCC	3 cut(s)	348, 614, 1596
HapII	CCGG	4 cut(s)	353, 1241, 1390, 1659
HgaI	GACGC	1 cut(s)	783
HhaI	GCGC	1 cut(s)	521
Hin1I	GRCGYC	1 cut(s)	794
Hin1II	CATG	5 cut(s)	431, 1055, 1078, 1371, 1451
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HincII	GTYRAC	2 cut(s)	881, 1204
HindII	GTYRAC	2 cut(s)	881, 1204
HinfI	GANTC	2 cut(s)	1010, 1319
HpaII	CCGG	4 cut(s)	353, 1241, 1390, 1659
HphI	GGTGA	1 cut(s)	964
Hpy166II	GTNNAC	5 cut(s)	139, 363, 881, 1204, 1466
Hpy188I	TCNGA	6 cut(s)	273, 547, 633, 1068, 1214, 1576
Hpy188III	TCNNGA	7 cut(s)	262, 353, 908, 1241, 1267, 1355, 1395
Hpy8I	GTNNAC	5 cut(s)	139, 363, 881, 1204, 1466
HpyAV	CCTTC	6 cut(s)	15, 338, 359, 407, 411, 1223
HpyCH4III	ACNGT	6 cut(s)	269, 497, 1261, 1273, 1340, 1401
HpyCH4IV	ACGT	3 cut(s)	80, 365, 1111
HpyCH4V	TGCA	9 cut(s)	96, 504, 991, 1082, 1367, 1466, 1494, 1586, 1616
HpyF10VI	GCNNNNNNNGC	5 cut(s)	34, 243, 848, 1441, 1463
HpyF3I	CTNAG	6 cut(s)	242, 546, 1019, 1131, 1385, 1500
HpySE526I	ACGT	3 cut(s)	80, 365, 1111
Hsp92I	GRCGYC	1 cut(s)	794
Hsp92II	CATG	5 cut(s)	431, 1055, 1078, 1371, 1451
HspAI	GCGC	1 cut(s)	519
Kpn2I	TCCGGA	2 cut(s)	352, 1240
Ksp22I	TGATCA	4 cut(s)	273, 628, 721, 1357
Kzo9I	GATC	7 cut(s)	273, 628, 714, 721, 1357, 1417, 1427
LguI	GCTCTTC	1 cut(s)	1629
LmnI	GCTCC	5 cut(s)	37, 151, 1034, 1243, 1441
Lsp1109I	GCAGC	3 cut(s)	51, 971, 1073
LweI	GCATC	3 cut(s)	624, 1116, 1209
MaeI	CTAG	4 cut(s)	29, 591, 708, 1505
MaeII	ACGT	3 cut(s)	80, 365, 1111
MalI	GATC	7 cut(s)	275, 630, 716, 723, 1359, 1419, 1429
MboI	GATC	7 cut(s)	273, 628, 714, 721, 1357, 1417, 1427
MboII	GAAGA	9 cut(s)	220, 346, 697, 934, 1133, 1201, 1373, 1412, 1646
MflI	RGATCY	1 cut(s)	714
MhlI	GDGCHC	2 cut(s)	1031, 1468
MluCI	AATT	1 cut(s)	1558
MmeI	TCCRAC	2 cut(s)	139, 216
Mph1103I	ATGCAT	1 cut(s)	1369
MroI	TCCGGA	2 cut(s)	352, 1240
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	9 cut(s)	381, 702, 930, 1071, 1179, 1343, 1403, 1647, 1678
MslI	CAYNNNNRTG	1 cut(s)	1452
MspA1I	CMGCKG	1 cut(s)	1599
MspI	CCGG	4 cut(s)	353, 1241, 1390, 1659
MspR9I	CCNGG	3 cut(s)	1046, 1554, 1659
Mva1269I	GAATGC	2 cut(s)	667, 1084
MvaI	CCWGG	2 cut(s)	1046, 1554
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	5 cut(s)	34, 243, 848, 1441, 1463
NciI	CCSGG	1 cut(s)	1659
NdeI	CATATG	1 cut(s)	726
NdeII	GATC	7 cut(s)	273, 628, 714, 721, 1357, 1417, 1427
NheI	GCTAGC	1 cut(s)	28
NlaIII	CATG	5 cut(s)	431, 1055, 1078, 1371, 1451
NlaIV	GGNNCC	3 cut(s)	475, 1239, 1443
NsiI	ATGCAT	1 cut(s)	1369
NspI	RCATGY	1 cut(s)	1371
NspV	TTCGAA	1 cut(s)	328
PaqCI	CACCTGC	1 cut(s)	982
PceI	AGGCCT	1 cut(s)	348
PciSI	GCTCTTC	1 cut(s)	1629
PcsI	WCGNNNNNNNCGW	1 cut(s)	662
PctI	GAATGC	2 cut(s)	667, 1084
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	1010, 1319
PkrI	GCNGC	6 cut(s)	47, 66, 223, 986, 1063, 1598
Ppu21I	YACGTR	1 cut(s)	366
PshBI	ATTAAT	1 cut(s)	1179
PsiI	TTATAA	1 cut(s)	947
Psp124BI	GAGCTC	1 cut(s)	1031
Psp1406I	AACGTT	1 cut(s)	80
Psp6I	CCWGG	2 cut(s)	1044, 1552
PspGI	CCWGG	2 cut(s)	1044, 1552
PspN4I	GGNNCC	3 cut(s)	475, 1239, 1443
PspPI	GGNCC	1 cut(s)	1623
PstI	CTGCAG	1 cut(s)	1618
PsuI	RGATCY	1 cut(s)	714
RsaI	GTAC	7 cut(s)	138, 284, 368, 494, 782, 919, 1337
RsaNI	GTAC	7 cut(s)	137, 283, 367, 493, 781, 918, 1336
RseI	CAYNNNNRTG	1 cut(s)	1452
SacI	GAGCTC	1 cut(s)	1031
SapI	GCTCTTC	1 cut(s)	1629
SaqAI	TTAA	9 cut(s)	381, 702, 930, 1071, 1179, 1343, 1403, 1647, 1678
SatI	GCNGC	6 cut(s)	46, 65, 222, 985, 1062, 1597
Sau3AI	GATC	7 cut(s)	273, 628, 714, 721, 1357, 1417, 1427
Sau96I	GGNCC	1 cut(s)	1623
ScrFI	CCNGG	3 cut(s)	1046, 1554, 1659
SduI	GDGCHC	2 cut(s)	1031, 1468
SfaNI	GCATC	3 cut(s)	624, 1116, 1209
SfcI	CTRYAG	1 cut(s)	1614
SfuI	TTCGAA	1 cut(s)	328
SinI	GGWCC	1 cut(s)	1623
SmiMI	CAYNNNNRTG	1 cut(s)	1452
SnaBI	TACGTA	1 cut(s)	366
Sse9I	AATT	1 cut(s)	1558
SseBI	AGGCCT	1 cut(s)	348
SsiI	CCGC	9 cut(s)	13, 35, 46, 222, 235, 437, 442, 1135, 1597
SspMI	CTAG	4 cut(s)	29, 591, 708, 1505
SstI	GAGCTC	1 cut(s)	1031
StuI	AGGCCT	1 cut(s)	348
StyD4I	CCNGG	3 cut(s)	1044, 1552, 1657
TaaI	ACNGT	6 cut(s)	269, 497, 1261, 1273, 1340, 1401
TaiI	ACGT	3 cut(s)	83, 368, 1114
TaqI	TCGA	4 cut(s)	231, 328, 1175, 1525
TaqII	GACCGA	1 cut(s)	1272
TasI	AATT	1 cut(s)	1558
TatI	WGTACW	1 cut(s)	136
TauI	GCSGC	3 cut(s)	48, 224, 1599
TfiI	GAWTC	2 cut(s)	1010, 1319
Tru1I	TTAA	9 cut(s)	381, 702, 930, 1071, 1179, 1343, 1403, 1647, 1678
Tru9I	TTAA	9 cut(s)	381, 702, 930, 1071, 1179, 1343, 1403, 1647, 1678
TscAI	CASTG	1 cut(s)	1623
TseI	GCWGC	3 cut(s)	64, 984, 1061
TspDTI	ATGAA	4 cut(s)	169, 347, 1091, 1242
TspGWI	ACGGA	2 cut(s)	798, 1021
TspRI	CASTG	1 cut(s)	1623
VneI	GTGCAC	1 cut(s)	1464
VpaK11BI	GGWCC	1 cut(s)	1623
VspI	ATTAAT	1 cut(s)	1179
XceI	RCATGY	1 cut(s)	1371
XmiI	GTMKAC	1 cut(s)	362
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	4 cut(s)	29, 591, 708, 1505
Zsp2I	ATGCAT	1 cut(s)	1369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.