Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0011921

Physical Location & Seq

Genomic Coordinates Reverse (-)

29149161 .. 29150786

Gene Structure 1626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00406640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1626 bp

ATGCGCGTAGCTTCAGCCTCAATCGCCACATTACTCAAAGCCTGCAAAACCCAGTTCCGTCTTGAACAAATCCACGCCCAGATCATCCACAAAGGTCTAGAGCAAGACCACTTCCTCATCACCCAATTCATCTGCCTCTCCAACGCTATCTCCTCCCTCTCATACTCCACCGCCGTCTTCCGCCGCGTCAACAACCCCAGCGGCCATCTCTGGAACTCACTACTCAAAGGCCACTGCGAAAGATCCGGTTTCTCTGCCACAGTCTCTCTCTTCGTTCGTATGAAGAGGGAGGAGGGCGTGGCGGATGAGTACACGTACCCGTCGGTTGTGAAGGCCTGTGCCGGCGAGGGAAGGGTCCGGGAGGGAAGGGCGGTTCATGGGTCGGCGGTGAGGTGTGGGGTTGATGGGAATGTGTTTGTGGGGACTAGCTTGGTTGACTTGTATGGGAAATGTAGGGAGGTTGTGTGTGCACGGAAGGTGTTTGATGGAATGTGTGAGAGAAATGTGGTGTCTTGGACTGCTATGGTTGTTGGGTATGCCGGTGTTGGGGATATGGTGGAGGCGAGTAAGTTGTTTGGTGAAATGCCGGAGAGGAATGCGGTGTCGTGGAATGTGGTTATTAGTGGGTTTGTTAGGTTGGGTGATTTGGGGAATGCGAGGAGGGTGTTTGAGGAGATGCCGGGGAAAGATGTGGTTTCTTTTACTACTATGATTGATGGATATGCAAAGTCCGGGGATATGGCTTCGGCCAGGTTTTTGTTTGAGCAGGCTCCGGTTAAGGATATTGTTATGTGGTCGGCGTTGATATCGGGGTATGCGCAAAATGGATTTCCCAATCAGGCTGTGAAAATATTTCTTGAAATGAGTAGTAGGAATGTGGAACCTGATGAGTTTATAGTGGTGAGCTTGATGTCAGCTTGTTCCCAAGTGGGTTGCTTGGAATTCGCTGAATGGGTTGATTCGTATCTGAGCAATAGCTCAATCGATGTTCGACAGCCTCATGTTCTCGCGGCTCTGATTGACATGAATGCAAAGTGTGGGAATATGGAAAGAGCAACGAGTTTGTTTGAAAACATGCCAAAACGGGACCTAATTTCGTATTGTTCAATGATACAAGGGTTGTCTATTCACGGCCGAGGGAATCAAGCTGTTGCCCTTTTCAATAGGATGTTAAGTGAAGGTTTGGCTCCAGATGAGGTAGCTTTTACAGTGATCCTGACAGCTTGTAGCCGTTCCGAGCTTGTTGAGGAGGGTCGGCATTTCTTTGAATTAATGAGACATAAATACAGTATGGTTCCCACTCCTGATCACTATGCATGCATGGTTGATCTTCTGAGCCGGTCAGGATGGTTACAAGAAGCTTATGAGCTTCTACAATCAATGCCTGTGGAACCTCATGCTGGTGCTTGGGGTGCACTACTTGGTGCATGTAAGCTACATTGCAATGTTGAGTTTGGGGAGTTGGTTGCTAATCGACTCTTTGTGCTTGAACCAAAAAGTGCTGGTAGTTATGTGCTCCTCTCCGACATCTATGCTGCATTCCACCGCTGGTTGGATGTTTCTGTTGTGAGGAACAAAATGCAGGAGAGAGGCCTTAAAAAGATACCTGGTATCAGTTCAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

541

Amino Acids

59.79

Weight (kDa)

6.55

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	201 - 230	4.5e-06	PPR repeat
PPR_2	PF13041	260 - 307	7.2e-09	PPR repeat family
PPR	PF01535	263 - 293	3.4e-07	PPR repeat
PPR_2	PF13041	363 - 410	9.8e-10	PPR repeat family
E_motif	PF20431	480 - 541	5.7e-19	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37570 AT5G37570
fragaria_vesca	FvH4_6g19660
malus_domestica	MD02G1238600.v1.1 MD07G1078100.v1.1
prunus_persica	Prupe.1G026700_v2.0.a1 Prupe.8G050400_v2.0.a1
pyrus_communis	pycom02g20390 pycom07g06180
rosa_chinensis	RchiOBHm_Chr3g0475001
rosa_laevigata	RLG00000023872
rosa_multiflora	Rmu_sc0003093.1_g000009
rosa_roxburghii	Rroxscaffold_6G00406640
rosa_rugosa	Rorug03G0146000
rosa_samantha	Rh3AG195600 Rh3BG225800 Rh3CG220600 Rh3DG221100
rosa_wichuraiana	Rw3G017810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	819
AccII	CGCG	3 cut(s)	6, 186, 1010
AclWI	GGATC	2 cut(s)	237, 1207
AcoI	YGGCCR	3 cut(s)	202, 747, 1132
AcsI	RAATTY	1 cut(s)	941
AfaI	GTAC	2 cut(s)	311, 317
AfiI	CCNNNNNNNGG	3 cut(s)	546, 1400, 1552
AflIII	ACRYGT	1 cut(s)	312
AgsI	TTSAA	8 cut(s)	65, 860, 1070, 1107, 1162, 1268, 1490, 1620
AjnI	CCWGG	2 cut(s)	749, 1606
AloI	GAACNNNNNNTCC	2 cut(s)	357, 389
Alw21I	GWGCWC	3 cut(s)	472, 1417, 1518
Alw26I	GTCTC	2 cut(s)	268, 1270
Alw44I	GTGCAC	2 cut(s)	468, 1413
AlwI	GGATC	2 cut(s)	237, 1207
AoxI	GGCC	6 cut(s)	202, 229, 333, 747, 1132, 1591
ApaLI	GTGCAC	2 cut(s)	468, 1413
ApeKI	GCWGC	1 cut(s)	1535
ApoI	RAATTY	1 cut(s)	941
AseI	ATTAAT	1 cut(s)	1271
AspLEI	GCGC	2 cut(s)	6, 820
AspS9I	GGNCC	2 cut(s)	355, 1087
AsuC2I	CCSGG	3 cut(s)	359, 681, 733
AsuHPI	GGTGA	5 cut(s)	112, 400, 590, 653, 913
AvaII	GGWCC	2 cut(s)	355, 1087
BaeGI	GKGCMC	2 cut(s)	472, 1417
BaeI	ACNNNNGTAYC	2 cut(s)	1103, 1136
BbsI	GAAGAC	1 cut(s)	169
Bbv12I	GWGCWC	3 cut(s)	472, 1417, 1518
BbvI	GCAGC	1 cut(s)	1522
BccI	CCATC	5 cut(s)	213, 398, 479, 710, 1341
BceAI	ACGGC	3 cut(s)	158, 1147, 1215
BcgI	CGANNNNNNTGC	2 cut(s)	1514, 1548
BciT130I	CCWGG	2 cut(s)	751, 1608
BclI	TGATCA	1 cut(s)	1306
BcnI	CCSGG	3 cut(s)	359, 681, 733
BcoDI	GTCTC	2 cut(s)	268, 1270
BfaI	CTAG	2 cut(s)	98, 426
BisI	GCNGC	4 cut(s)	184, 202, 1011, 1536
BlsI	GCNGC	4 cut(s)	185, 203, 1012, 1537
Bme1390I	CCNGG	5 cut(s)	359, 681, 733, 751, 1608
Bme18I	GGWCC	2 cut(s)	355, 1087
BmgT120I	GGNCC	2 cut(s)	355, 1087
BmiI	GGNNCC	7 cut(s)	356, 771, 882, 1088, 1188, 1296, 1392
BmrFI	CCNGG	5 cut(s)	359, 681, 733, 751, 1608
BmrI	ACTGGG	1 cut(s)	46
BmsI	GCATC	1 cut(s)	666
BmuI	ACTGGG	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	169
BpmI	CTGGAG	1 cut(s)	1173
BpuMI	CCSGG	3 cut(s)	359, 681, 733
Bsa29I	ATCGAT	1 cut(s)	984
BsaAI	YACGTR	1 cut(s)	315
BsaBI	GATNNNNATC	1 cut(s)	963
BsaJI	CCNNGG	3 cut(s)	680, 732, 1135
BsaWI	WCCGGW	2 cut(s)	245, 772
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 449, 479
Bsc4I	CCNNNNNNNGG	3 cut(s)	546, 1400, 1552
Bse118I	RCCGGY	3 cut(s)	341, 539, 1338
Bse1I	ACTGG	1 cut(s)	52
Bse3DI	GCAATG	2 cut(s)	1438, 1450
Bse8I	GATNNNNATC	1 cut(s)	963
BseBI	CCWGG	2 cut(s)	751, 1608
BseCI	ATCGAT	1 cut(s)	984
BseDI	CCNNGG	3 cut(s)	680, 732, 1135
BseGI	GGATG	5 cut(s)	84, 310, 1173, 1352, 1561
BseJI	GATNNNNATC	1 cut(s)	963
BseLI	CCNNNNNNNGG	3 cut(s)	546, 1400, 1552
BseMI	GCAATG	2 cut(s)	1438, 1450
BseMII	CTCAG	2 cut(s)	959, 1325
BseNI	ACTGG	1 cut(s)	52
BseRI	GAGGAG	6 cut(s)	142, 305, 673, 686, 1262, 1508
BseSI	GKGCMC	2 cut(s)	472, 1417
BseX3I	CGGCCG	1 cut(s)	1132
BseXI	GCAGC	1 cut(s)	1522
BseYI	CCCAGC	1 cut(s)	197
Bsh1236I	CGCG	3 cut(s)	6, 186, 1010
Bsh1285I	CGRYCG	1 cut(s)	1135
BshFI	GGCC	6 cut(s)	204, 231, 335, 749, 1134, 1593
BshVI	ATCGAT	1 cut(s)	984
BsiEI	CGRYCG	1 cut(s)	1135
BsiHKAI	GWGCWC	3 cut(s)	472, 1417, 1518
BsiSI	CCGG	9 cut(s)	246, 342, 358, 540, 587, 680, 732, 773, 1339
BslFI	GGGAC	2 cut(s)	436, 1100
BslI	CCNNNNNNNGG	3 cut(s)	546, 1400, 1552
BsmAI	GTCTC	2 cut(s)	268, 1270
BsmFI	GGGAC	2 cut(s)	436, 1100
BsmI	GAATGC	4 cut(s)	601, 658, 1033, 1538
BsnI	GGCC	6 cut(s)	204, 231, 335, 749, 1134, 1593
Bsp1286I	GDGCHC	3 cut(s)	472, 1417, 1518
Bsp143I	GATC	5 cut(s)	81, 242, 1212, 1306, 1327
BspANI	GGCC	6 cut(s)	204, 231, 335, 749, 1134, 1593
BspCNI	CTCAG	2 cut(s)	960, 1326
BspDI	ATCGAT	1 cut(s)	984
BspFNI	CGCG	3 cut(s)	6, 186, 1010
BspLI	GGNNCC	7 cut(s)	356, 771, 882, 1088, 1188, 1296, 1392
BspPI	GGATC	2 cut(s)	237, 1207
BsrDI	GCAATG	2 cut(s)	1438, 1450
BsrFI	RCCGGY	3 cut(s)	341, 539, 1338
BsrI	ACTGG	1 cut(s)	52
BssAI	RCCGGY	3 cut(s)	341, 539, 1338
BssECI	CCNNGG	3 cut(s)	680, 732, 1135
BssMI	GATC	5 cut(s)	81, 242, 1212, 1306, 1327
Bst2UI	CCWGG	2 cut(s)	751, 1608
Bst4CI	ACNGT	3 cut(s)	262, 1210, 1289
Bst6I	CTCTTC	2 cut(s)	275, 278
BstBAI	YACGTR	1 cut(s)	315
BstC8I	GCNNGC	4 cut(s)	43, 343, 768, 1318
BstDEI	CTNAG	2 cut(s)	968, 1334
BstF5I	GGATG	5 cut(s)	84, 310, 1173, 1352, 1561
BstFNI	CGCG	3 cut(s)	6, 186, 1010
BstHHI	GCGC	2 cut(s)	6, 820
BstKTI	GATC	5 cut(s)	84, 245, 1215, 1309, 1330
BstMAI	GTCTC	2 cut(s)	268, 1270
BstMBI	GATC	5 cut(s)	81, 242, 1212, 1306, 1327
BstMCI	CGRYCG	1 cut(s)	1135
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 1412
BstNI	CCWGG	2 cut(s)	751, 1608
BstNSI	RCATGY	3 cut(s)	1078, 1320, 1431
BstSCI	CCNGG	5 cut(s)	357, 679, 731, 749, 1606
BstSLI	GKGCMC	2 cut(s)	472, 1417
BstUI	CGCG	3 cut(s)	6, 186, 1010
BstV1I	GCAGC	1 cut(s)	1522
BstV2I	GAAGAC	1 cut(s)	169
BstX2I	RGATCY	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	242
BstZI	CGGCCG	1 cut(s)	1132
Bsu15I	ATCGAT	1 cut(s)	984
BsuRI	GGCC	6 cut(s)	204, 231, 335, 749, 1134, 1593
BsuTUI	ATCGAT	1 cut(s)	984
BtsCI	GGATG	5 cut(s)	84, 310, 1173, 1352, 1561
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	2 cut(s)	232, 1215
Cac8I	GCNNGC	4 cut(s)	43, 343, 768, 1318
CfoI	GCGC	2 cut(s)	6, 820
Cfr10I	RCCGGY	3 cut(s)	341, 539, 1338
Cfr13I	GGNCC	2 cut(s)	355, 1087
ClaI	ATCGAT	1 cut(s)	984
CseI	GACGC	1 cut(s)	175
CsiI	ACCWGGT	1 cut(s)	1606
Csp6I	GTAC	2 cut(s)	310, 316
CspCI	CAANNNNNGTGG	2 cut(s)	1368, 1403
CviAII	CATG	8 cut(s)	377, 1001, 1024, 1075, 1317, 1321, 1397, 1428
CviQI	GTAC	2 cut(s)	310, 316
DdeI	CTNAG	2 cut(s)	968, 1334
DpnI	GATC	5 cut(s)	83, 244, 1214, 1308, 1329
DpnII	GATC	5 cut(s)	81, 242, 1212, 1306, 1327
EaeI	YGGCCR	3 cut(s)	202, 747, 1132
EagI	CGGCCG	1 cut(s)	1132
Eam1104I	CTCTTC	2 cut(s)	275, 278
EarI	CTCTTC	2 cut(s)	275, 278
EciI	GGCGGA	2 cut(s)	170, 317
EclXI	CGGCCG	1 cut(s)	1132
Eco147I	AGGCCT	2 cut(s)	335, 1593
Eco32I	GATATC	1 cut(s)	807
Eco47I	GGWCC	2 cut(s)	355, 1087
Eco52I	CGGCCG	1 cut(s)	1132
EcoO109I	RGGNCCY	1 cut(s)	1087
EcoRI	GAATTC	1 cut(s)	941
EcoRII	CCWGG	2 cut(s)	749, 1606
EcoRV	GATATC	1 cut(s)	807
EcoT22I	ATGCAT	2 cut(s)	1318, 1322
FaeI	CATG	8 cut(s)	380, 1004, 1027, 1078, 1320, 1324, 1400, 1431
FaqI	GGGAC	2 cut(s)	436, 1100
FatI	CATG	8 cut(s)	376, 1000, 1023, 1074, 1316, 1320, 1396, 1427
FbaI	TGATCA	1 cut(s)	1306
Fnu4HI	GCNGC	4 cut(s)	184, 202, 1011, 1536
FokI	GGATG	5 cut(s)	71, 317, 1180, 1359, 1568
Fsp4HI	GCNGC	4 cut(s)	184, 202, 1011, 1536
FspBI	CTAG	2 cut(s)	98, 426
FspI	TGCGCA	1 cut(s)	819
GlaI	GCGC	2 cut(s)	5, 819
GluI	GCNGC	4 cut(s)	184, 202, 1011, 1536
GsaI	CCCAGC	1 cut(s)	201
GsuI	CTGGAG	1 cut(s)	1173
HaeIII	GGCC	6 cut(s)	204, 231, 335, 749, 1134, 1593
HapII	CCGG	9 cut(s)	246, 342, 358, 540, 587, 680, 732, 773, 1339
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	2 cut(s)	6, 820
Hin1II	CATG	8 cut(s)	380, 1004, 1027, 1078, 1320, 1324, 1400, 1431
Hin6I	GCGC	2 cut(s)	4, 818
HinP1I	GCGC	2 cut(s)	4, 818
HincII	GTYRAC	2 cut(s)	190, 436
HindII	GTYRAC	2 cut(s)	190, 436
HindIII	AAGCTT	1 cut(s)	1359
HinfI	GANTC	3 cut(s)	959, 1141, 1476
HpaII	CCGG	9 cut(s)	246, 342, 358, 540, 587, 680, 732, 773, 1339
HphI	GGTGA	5 cut(s)	112, 400, 590, 653, 913
Hpy166II	GTNNAC	5 cut(s)	190, 312, 436, 470, 1415
Hpy188I	TCNGA	5 cut(s)	969, 1017, 1237, 1335, 1525
Hpy188III	TCNNGA	8 cut(s)	62, 98, 211, 857, 1190, 1216, 1304, 1344
Hpy8I	GTNNAC	5 cut(s)	190, 312, 436, 470, 1415
Hpy99I	CGWCG	1 cut(s)	325
HpyAV	CCTTC	5 cut(s)	325, 345, 360, 469, 1172
HpyCH4III	ACNGT	3 cut(s)	262, 1210, 1289
HpyCH4IV	ACGT	1 cut(s)	314
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 1412
HpyF3I	CTNAG	2 cut(s)	968, 1334
HpySE526I	ACGT	1 cut(s)	314
Hsp92II	CATG	8 cut(s)	380, 1004, 1027, 1078, 1320, 1324, 1400, 1431
HspAI	GCGC	2 cut(s)	4, 818
KroI	GCCGGC	1 cut(s)	341
KroNI	GCCGGC	1 cut(s)	343
Ksp22I	TGATCA	1 cut(s)	1306
Kzo9I	GATC	5 cut(s)	81, 242, 1212, 1306, 1327
LmnI	GCTCC	3 cut(s)	775, 1192, 1521
Lsp1109I	GCAGC	1 cut(s)	1522
LweI	GCATC	1 cut(s)	666
MabI	ACCWGGT	1 cut(s)	1606
MaeI	CTAG	2 cut(s)	98, 426
MaeII	ACGT	1 cut(s)	314
MaeIII	GTNAC	1 cut(s)	1350
MalI	GATC	5 cut(s)	83, 244, 1214, 1308, 1329
MboI	GATC	5 cut(s)	81, 242, 1212, 1306, 1327
MboII	GAAGA	4 cut(s)	169, 262, 295, 1322
MflI	RGATCY	1 cut(s)	242
MhlI	GDGCHC	3 cut(s)	472, 1417, 1518
MluCI	AATT	5 cut(s)	125, 941, 1092, 1268, 1620
MlyI	GAGTC	1 cut(s)	1470
MmeI	TCCRAC	3 cut(s)	165, 1533, 1548
Mph1103I	ATGCAT	2 cut(s)	1318, 1322
MroNI	GCCGGC	1 cut(s)	341
MseI	TTAA	4 cut(s)	777, 1172, 1271, 1596
MslI	CAYNNNNRTG	2 cut(s)	1401, 1443
MspA1I	CMGCKG	2 cut(s)	201, 1548
MspI	CCGG	9 cut(s)	246, 342, 358, 540, 587, 680, 732, 773, 1339
MspR9I	CCNGG	5 cut(s)	359, 681, 733, 751, 1608
Mva1269I	GAATGC	4 cut(s)	601, 658, 1033, 1538
MvaI	CCWGG	2 cut(s)	751, 1608
MvnI	CGCG	3 cut(s)	6, 186, 1010
MwoI	GCNNNNNNNGC	2 cut(s)	23, 1412
NaeI	GCCGGC	1 cut(s)	343
NciI	CCSGG	3 cut(s)	359, 681, 733
NdeII	GATC	5 cut(s)	81, 242, 1212, 1306, 1327
NgoMIV	GCCGGC	1 cut(s)	341
NlaIII	CATG	8 cut(s)	380, 1004, 1027, 1078, 1320, 1324, 1400, 1431
NlaIV	GGNNCC	7 cut(s)	356, 771, 882, 1088, 1188, 1296, 1392
NmeAIII	GCCGAG	1 cut(s)	1160
NsbI	TGCGCA	1 cut(s)	819
NsiI	ATGCAT	2 cut(s)	1318, 1322
NspI	RCATGY	3 cut(s)	1078, 1320, 1431
PaeI	GCATGC	1 cut(s)	1320
PceI	AGGCCT	2 cut(s)	335, 1593
PctI	GAATGC	4 cut(s)	601, 658, 1033, 1538
PdiI	GCCGGC	1 cut(s)	343
PfeI	GAWTC	2 cut(s)	959, 1141
PfoI	TCCNGGA	1 cut(s)	357
PkrI	GCNGC	4 cut(s)	185, 203, 1012, 1537
PleI	GAGTC	1 cut(s)	1470
PpsI	GAGTC	1 cut(s)	1470
Ppu21I	YACGTR	1 cut(s)	315
PpuMI	RGGWCCY	1 cut(s)	1087
PshBI	ATTAAT	1 cut(s)	1271
Psp5II	RGGWCCY	1 cut(s)	1087
Psp6I	CCWGG	2 cut(s)	749, 1606
PspFI	CCCAGC	1 cut(s)	197
PspGI	CCWGG	2 cut(s)	749, 1606
PspN4I	GGNNCC	7 cut(s)	356, 771, 882, 1088, 1188, 1296, 1392
PspPI	GGNCC	2 cut(s)	355, 1087
PspPPI	RGGWCCY	1 cut(s)	1087
PsuI	RGATCY	1 cut(s)	242
RsaI	GTAC	2 cut(s)	311, 317
RsaNI	GTAC	2 cut(s)	310, 316
RseI	CAYNNNNRTG	2 cut(s)	1401, 1443
SaqAI	TTAA	4 cut(s)	777, 1172, 1271, 1596
SatI	GCNGC	4 cut(s)	184, 202, 1011, 1536
Sau3AI	GATC	5 cut(s)	81, 242, 1212, 1306, 1327
Sau96I	GGNCC	2 cut(s)	355, 1087
SchI	GAGTC	1 cut(s)	1470
ScrFI	CCNGG	5 cut(s)	359, 681, 733, 751, 1608
SduI	GDGCHC	3 cut(s)	472, 1417, 1518
SexAI	ACCWGGT	1 cut(s)	1606
SfaNI	GCATC	1 cut(s)	666
SinI	GGWCC	2 cut(s)	355, 1087
SmiMI	CAYNNNNRTG	2 cut(s)	1401, 1443
SphI	GCATGC	1 cut(s)	1320
Sse9I	AATT	5 cut(s)	125, 941, 1092, 1268, 1620
SseBI	AGGCCT	2 cut(s)	335, 1593
SspI	AATATT	1 cut(s)	852
SspMI	CTAG	2 cut(s)	98, 426
StuI	AGGCCT	2 cut(s)	335, 1593
StyD4I	CCNGG	5 cut(s)	357, 679, 731, 749, 1606
TaaI	ACNGT	3 cut(s)	262, 1210, 1289
TaiI	ACGT	1 cut(s)	317
TaqI	TCGA	3 cut(s)	984, 991, 1474
TasI	AATT	5 cut(s)	125, 941, 1092, 1268, 1620
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	3 cut(s)	186, 204, 1013
TfiI	GAWTC	2 cut(s)	959, 1141
Tru1I	TTAA	4 cut(s)	777, 1172, 1271, 1596
Tru9I	TTAA	4 cut(s)	777, 1172, 1271, 1596
TscAI	CASTG	2 cut(s)	239, 1215
TseI	GCWGC	1 cut(s)	1535
TspDTI	ATGAA	4 cut(s)	118, 296, 365, 1040
TspGWI	ACGGA	2 cut(s)	47, 487
TspRI	CASTG	2 cut(s)	239, 1215
VneI	GTGCAC	2 cut(s)	468, 1413
VpaK11BI	GGWCC	2 cut(s)	355, 1087
VspI	ATTAAT	1 cut(s)	1271
XapI	RAATTY	1 cut(s)	941
XbaI	TCTAGA	1 cut(s)	97
XceI	RCATGY	3 cut(s)	1078, 1320, 1431
XspI	CTAG	2 cut(s)	98, 426
Zsp2I	ATGCAT	2 cut(s)	1318, 1322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.