AT5G38300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012028
Physical Location & Seq
Forward (+)
15305847 .. 15307008
1162 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38300.1

Sequence Viewer

Length: 792 bp
ATGGCGGATATAATCTCAAATCCGACCATGGAACAACTCTTCTTCTCTGTAGATCCGATGTCTCTTATACTCTCTCAAAACTCCGACACACATCAACTTAAACTCTTGTTAGACGGTTTCTCCGGATTCGAAAGAGGTCCAAGATACGATGAATACTCGAGATTACGTGAATCGAAGCTTCGCATGAAACGTGATTTTCAGAAATTCCTCGAGGAAGAAGACGAAGTAGAAGAGCCGAGGATCAAAAAACAAGTCAGATTCGAGGGTAATTCTGTAAATTCGCAAGAAGGTGATAAGTTTTCTCCGGAGAAGAAGAAACAGAGTCGGTTCGAGGGTATTTCAGTAATTTCACAAGAAGATAGGTTTTCGCCGGAGAAGGTGAAGAAACAGAGTCGATTTGGGTTTTCTCCGCTGAAAAAAGCTGTTCCGTCTTCGTTGGCACAATCAGTTCCTGATTTCTCTGCTGTGATACGTAAAGAGAATCGTCGTCCGGTTAATATCAACACTATTACTCCGCCACCACCGACTTCGAAGAGTAGAAACGGCGGCGTTTTGACGGGATCGGCTTCAAGAGGGAGCAAGTCGGCGAGTGCTGGAGAGAAGAAGAGTAAAGGGATGATGATGATGGGAATGGCACGTAAGAGTTACGCTAATGTTGAAGATCTTAAGAAGATTTCAATGGCGGCTGCTTCTGCTATTAATGGCGGTGGCGGTGGAGGAGGAGGAGGGAGAAAAGTTGGTGACTGTGGTGGTGGTCGTCGGACTATTCTTGGTTACAGACAAATTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

263

Amino Acids

29.0

Weight (kDa)

9.88

Isoelectric Point (pI)

54.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012028)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67035 AT1G67035 AT5G38300
fragaria_vesca FvH4_6g36230
malus_domestica MD09G1253700.v1.1 MD17G1245500.v1.1
prunus_persica Prupe.3G143600_v2.0.a1
pyrus_communis pycom09g16960 pycom17g24800
rosa_chinensis RchiOBHm_Chr2g0148201
rosa_laevigata RLG00000020326
rosa_multiflora Rmu_sc0001516.1_g000105
rosa_roxburghii Rroxscaffold_2G00099000
rosa_rugosa Rorug02G0404400
rosa_samantha Rh2AG463000 Rh2BG476200 Rh2CG449800 Rh2DG484900
rosa_wichuraiana Rw2G037750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 209
AccIII TCCGGA 2 cut(s) 122, 304
AciI CCGC 7 cut(s) 5, 410, 515, 546, 683, 705, 711
AclWI GGATC 3 cut(s) 47, 248, 568
AcsI RAATTY 3 cut(s) 203, 277, 783
AflII CTTAAG 1 cut(s) 665
AgsI TTSAA 3 cut(s) 570, 659, 678
AluBI AGCT 2 cut(s) 178, 422
AluI AGCT 2 cut(s) 178, 422
Alw26I GTCTC 1 cut(s) 66
AlwI GGATC 3 cut(s) 47, 248, 568
AlwNI CAGNNNCTG 1 cut(s) 452
Ama87I CYCGRG 2 cut(s) 157, 209
Aor13HI TCCGGA 2 cut(s) 122, 304
ApeKI GCWGC 1 cut(s) 686
ApoI RAATTY 3 cut(s) 203, 277, 783
ArsI GACNNNNNNTTYG 2 cut(s) 237, 269
AseI ATTAAT 1 cut(s) 699
AspS9I GGNCC 1 cut(s) 137
AsuHPI GGTGA 3 cut(s) 302, 391, 752
AsuII TTCGAA 2 cut(s) 129, 530
AvaI CYCGRG 2 cut(s) 157, 209
AvaII GGWCC 1 cut(s) 137
BbsI GAAGAC 2 cut(s) 225, 423
BbvI GCAGC 1 cut(s) 673
BccI CCATC 1 cut(s) 619
BceAI ACGGC 1 cut(s) 559
BcoDI GTCTC 1 cut(s) 66
BfmI CTRYAG 1 cut(s) 48
BfrI CTTAAG 1 cut(s) 665
BglII AGATCT 1 cut(s) 661
BisI GCNGC 3 cut(s) 547, 684, 687
BlsI GCNGC 3 cut(s) 548, 685, 688
Bme18I GGWCC 1 cut(s) 137
BmeT110I CYCGRG 2 cut(s) 157, 209
BmgT120I GGNCC 1 cut(s) 137
BpiI GAAGAC 2 cut(s) 225, 423
BpmI CTGGAG 1 cut(s) 615
Bpu14I TTCGAA 2 cut(s) 129, 530
BsaAI YACGTR 3 cut(s) 167, 473, 638
BsaJI CCNNGG 2 cut(s) 27, 236
BsaWI WCCGGW 3 cut(s) 122, 304, 490
BsaXI ACNNNNNCTCC 4 cut(s) 104, 134, 496, 526
BseAI TCCGGA 2 cut(s) 122, 304
BseDI CCNNGG 2 cut(s) 27, 236
BseGI GGATG 1 cut(s) 621
BseRI GAGGAG 3 cut(s) 732, 735, 738
BseXI GCAGC 1 cut(s) 673
BsiHKCI CYCGRG 2 cut(s) 157, 209
BsiSI CCGG 4 cut(s) 123, 305, 371, 491
BsmAI GTCTC 1 cut(s) 66
BsoBI CYCGRG 2 cut(s) 157, 209
Bsp119I TTCGAA 2 cut(s) 129, 530
Bsp13I TCCGGA 2 cut(s) 122, 304
Bsp143I GATC 4 cut(s) 52, 240, 560, 661
Bsp19I CCATGG 1 cut(s) 27
BspACI CCGC 7 cut(s) 5, 410, 515, 546, 683, 705, 711
BspEI TCCGGA 2 cut(s) 122, 304
BspPI GGATC 3 cut(s) 47, 248, 568
BspQI GCTCTTC 1 cut(s) 225
BspT104I TTCGAA 2 cut(s) 129, 530
BspTI CTTAAG 1 cut(s) 665
BssECI CCNNGG 2 cut(s) 27, 236
BssMI GATC 4 cut(s) 52, 240, 560, 661
BssT1I CCWWGG 1 cut(s) 27
Bst4CI ACNGT 2 cut(s) 116, 746
Bst6I CTCTTC 4 cut(s) 44, 225, 527, 599
BstAFI CTTAAG 1 cut(s) 665
BstBAI YACGTR 3 cut(s) 167, 473, 638
BstBI TTCGAA 2 cut(s) 129, 530
BstDSI CCRYGG 1 cut(s) 27
BstF5I GGATG 1 cut(s) 621
BstKTI GATC 4 cut(s) 55, 243, 563, 664
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 4 cut(s) 52, 240, 560, 661
BstMWI GCNNNNNNNGC 1 cut(s) 692
BstSFI CTRYAG 1 cut(s) 48
BstSNI TACGTA 1 cut(s) 473
BstV1I GCAGC 1 cut(s) 673
BstV2I GAAGAC 2 cut(s) 225, 423
BstX2I RGATCY 2 cut(s) 52, 661
BstYI RGATCY 2 cut(s) 52, 661
BtgI CCRYGG 1 cut(s) 27
BtsCI GGATG 1 cut(s) 621
CaiI CAGNNNCTG 1 cut(s) 452
Cfr13I GGNCC 1 cut(s) 137
CviAII CATG 2 cut(s) 28, 184
CviJI RGCY 5 cut(s) 178, 235, 422, 566, 686
CviKI_1 RGCY 5 cut(s) 178, 235, 422, 566, 686
DpnI GATC 4 cut(s) 54, 242, 562, 663
DpnII GATC 4 cut(s) 52, 240, 560, 661
Eam1104I CTCTTC 4 cut(s) 44, 225, 527, 599
EarI CTCTTC 4 cut(s) 44, 225, 527, 599
EciI GGCGGA 2 cut(s) 20, 504
Eco105I TACGTA 1 cut(s) 473
Eco130I CCWWGG 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 137
Eco88I CYCGRG 2 cut(s) 157, 209
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 2 cut(s) 31, 187
FaiI YATR 4 cut(s) 11, 29, 68, 185
FatI CATG 2 cut(s) 27, 183
Fnu4HI GCNGC 3 cut(s) 547, 684, 687
FokI GGATG 1 cut(s) 628
Fsp4HI GCNGC 3 cut(s) 547, 684, 687
GluI GCNGC 3 cut(s) 547, 684, 687
GsuI CTGGAG 1 cut(s) 615
HapII CCGG 4 cut(s) 123, 305, 371, 491
Hin1II CATG 2 cut(s) 31, 187
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 6 cut(s) 126, 170, 258, 322, 391, 481
HpaII CCGG 4 cut(s) 123, 305, 371, 491
HphI GGTGA 3 cut(s) 302, 391, 752
Hpy188I TCNGA 6 cut(s) 24, 57, 85, 201, 257, 762
Hpy188III TCNNGA 5 cut(s) 123, 159, 305, 452, 570
Hpy99I CGWCG 2 cut(s) 489, 762
HpyAV CCTTC 2 cut(s) 281, 370
HpyCH4III ACNGT 2 cut(s) 116, 746
HpyCH4IV ACGT 4 cut(s) 166, 190, 472, 637
HpyF10VI GCNNNNNNNGC 1 cut(s) 692
HpySE526I ACGT 4 cut(s) 166, 190, 472, 637
Hsp92II CATG 2 cut(s) 31, 187
Kpn2I TCCGGA 2 cut(s) 122, 304
Kzo9I GATC 4 cut(s) 52, 240, 560, 661
LguI GCTCTTC 1 cut(s) 225
LmnI GCTCC 1 cut(s) 576
LpnPI CCDG 6 cut(s) 136, 318, 384, 465, 504, 579
Lsp1109I GCAGC 1 cut(s) 673
MaeII ACGT 4 cut(s) 166, 190, 472, 637
MaeIII GTNAC 3 cut(s) 644, 740, 773
MalI GATC 4 cut(s) 54, 242, 562, 663
MboI GATC 4 cut(s) 52, 240, 560, 661
MflI RGATCY 2 cut(s) 52, 661
MluCI AATT 5 cut(s) 203, 268, 277, 345, 783
MlyI GAGTC 2 cut(s) 331, 400
MmeI TCCRAC 3 cut(s) 47, 108, 740
MroI TCCGGA 2 cut(s) 122, 304
MseI TTAA 4 cut(s) 99, 495, 666, 699
MspA1I CMGCKG 1 cut(s) 412
MspCI CTTAAG 1 cut(s) 665
MspI CCGG 4 cut(s) 123, 305, 371, 491
MwoI GCNNNNNNNGC 1 cut(s) 692
NcoI CCATGG 1 cut(s) 27
NdeII GATC 4 cut(s) 52, 240, 560, 661
NlaIII CATG 2 cut(s) 31, 187
NmeAIII GCCGAG 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 740
NspV TTCGAA 2 cut(s) 129, 530
PaeR7I CTCGAG 2 cut(s) 157, 209
PciSI GCTCTTC 1 cut(s) 225
PcsI WCGNNNNNNNCGW 1 cut(s) 187
PfeI GAWTC 4 cut(s) 126, 170, 258, 481
PkrI GCNGC 3 cut(s) 548, 685, 688
PleI GAGTC 2 cut(s) 330, 399
PpsI GAGTC 2 cut(s) 330, 399
Ppu21I YACGTR 3 cut(s) 167, 473, 638
PshBI ATTAAT 1 cut(s) 699
PspPI GGNCC 1 cut(s) 137
PspXI VCTCGAGB 1 cut(s) 209
PstNI CAGNNNCTG 1 cut(s) 452
PsuI RGATCY 2 cut(s) 52, 661
SapI GCTCTTC 1 cut(s) 225
SaqAI TTAA 4 cut(s) 99, 495, 666, 699
SatI GCNGC 3 cut(s) 547, 684, 687
Sau3AI GATC 4 cut(s) 52, 240, 560, 661
Sau96I GGNCC 1 cut(s) 137
SchI GAGTC 2 cut(s) 331, 400
SfcI CTRYAG 1 cut(s) 48
Sfr274I CTCGAG 2 cut(s) 157, 209
SfuI TTCGAA 2 cut(s) 129, 530
SinI GGWCC 1 cut(s) 137
SlaI CTCGAG 2 cut(s) 157, 209
SmlI CTYRAG 3 cut(s) 157, 209, 665
SmoI CTYRAG 3 cut(s) 157, 209, 665
SnaBI TACGTA 1 cut(s) 473
Sse9I AATT 5 cut(s) 203, 268, 277, 345, 783
SsiI CCGC 7 cut(s) 5, 410, 515, 546, 683, 705, 711
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 2 cut(s) 116, 746
TaiI ACGT 4 cut(s) 169, 193, 475, 640
TaqI TCGA 8 cut(s) 129, 158, 173, 210, 261, 330, 394, 530
TasI AATT 5 cut(s) 203, 268, 277, 345, 783
TauI GCSGC 2 cut(s) 549, 686
TfiI GAWTC 4 cut(s) 126, 170, 258, 481
Tru1I TTAA 4 cut(s) 99, 495, 666, 699
Tru9I TTAA 4 cut(s) 99, 495, 666, 699
TseFI GTSAC 1 cut(s) 740
TseI GCWGC 1 cut(s) 686
Tsp45I GTSAC 1 cut(s) 740
TspDTI ATGAA 2 cut(s) 165, 200
TspGWI ACGGA 1 cut(s) 417
Vha464I CTTAAG 1 cut(s) 665
VpaK11BI GGWCC 1 cut(s) 137
VspI ATTAAT 1 cut(s) 699
XapI RAATTY 3 cut(s) 203, 277, 783
XhoI CTCGAG 2 cut(s) 157, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.