RLG00000020326

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012028
Physical Location & Seq
Reverse (-)
63739411 .. 63740106
696 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020326

Sequence Viewer

Length: 696 bp
ATGGCAGAGACTATTACGCATCAACAAAGCGCCGCCGTAGGGGGTAGAGCTCTTGATTCTCTCCTCCACGCCCTCGACCCCATATCTCTCCTTCTCTCCCAGAACCCAGTTCCGGGATCTGAACCTGACTACATGGAGCGAGGGCCAAGATACAACGCGTACGCGGAGCTCAGAGAATCCAAGCTAAGAAGGAAGTATGAGCAAATGAGCCAAGATGATGATCACCAACTTGAACAAGAGCAAGAATCAAAACCGACTCCTGTTAAGAAGCAGGTCAAGTTTCAGGTTACTGTTCCGAGTAATGTGCCCCGGAAAAAGGGTGCTGGTAATTCCTCTTCTTCTTCTTCTTCTGTTGTTGCTCAATCTGTGCCTGATTTCTCGGCGGTGCTGAGGAAGGAGAAAGAGAACCGTAGGCCGGCGACGAGGCTTGAGATGACTCCGCCGTGGTCGAAGGGTAACCACGGCGGGGTTTTGTCGAATTCGAGAGGGAGTAAGTCGGCGAGTGCGGGGGAGAAGAACAGGGGCAATAATGGAGGAGGGTTGATGGCAAGAAAGAGCTATGCGAGTCTTGAAGAACTGAAGGGTTTGTCTTCAATTGCTGCTAGTGCTATTAATTGTGGCGGCGGTGAAAACAGGGCAGGTGGGAGGATCGGTAGAGCAACGGCCAAGAATGTTTTGGGTTACAGACACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

24.89

Weight (kDa)

9.84

Isoelectric Point (pI)

49.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012028)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67035 AT1G67035 AT5G38300
fragaria_vesca FvH4_6g36230
malus_domestica MD09G1253700.v1.1 MD17G1245500.v1.1
prunus_persica Prupe.3G143600_v2.0.a1
pyrus_communis pycom09g16960 pycom17g24800
rosa_chinensis RchiOBHm_Chr2g0148201
rosa_laevigata RLG00000020326
rosa_multiflora Rmu_sc0001516.1_g000105
rosa_roxburghii Rroxscaffold_2G00099000
rosa_rugosa Rorug02G0404400
rosa_samantha Rh2AG463000 Rh2BG476200 Rh2CG449800 Rh2DG484900
rosa_wichuraiana Rw2G037750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 629
Acc36I ACCTGC 2 cut(s) 262, 629
AccII CGCG 2 cut(s) 158, 164
AciI CCGC 8 cut(s) 33, 164, 383, 440, 465, 506, 621, 624
AclWI GGATC 2 cut(s) 124, 656
AcoI YGGCCR 1 cut(s) 663
AcsI RAATTY 1 cut(s) 478
AcuI CTGAAG 1 cut(s) 599
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 6 cut(s) 39, 112, 113, 316, 415, 466
AflIII ACRYGT 1 cut(s) 156
AgsI TTSAA 3 cut(s) 233, 572, 594
AluBI AGCT 4 cut(s) 50, 169, 184, 558
AluI AGCT 4 cut(s) 50, 169, 184, 558
Alw21I GWGCWC 2 cut(s) 52, 171
Alw26I GTCTC 1 cut(s) 2
AlwI GGATC 2 cut(s) 124, 656
AoxI GGCC 3 cut(s) 143, 413, 663
ApeKI GCWGC 1 cut(s) 599
ApoI RAATTY 1 cut(s) 478
AseI ATTAAT 1 cut(s) 612
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 143
AsuC2I CCSGG 2 cut(s) 114, 310
AsuHPI GGTGA 2 cut(s) 215, 638
BaeGI GKGCMC 1 cut(s) 309
BanII GRGCYC 2 cut(s) 52, 171
BarI GAAGNNNNNNTAC 2 cut(s) 319, 351
BbsI GAAGAC 1 cut(s) 582
Bbv12I GWGCWC 2 cut(s) 52, 171
BbvCI CCTCAGC 1 cut(s) 389
BbvI GCAGC 1 cut(s) 586
BccI CCATC 1 cut(s) 538
BceAI ACGGC 4 cut(s) 20, 427, 478, 678
BcgI CGANNNNNNTGC 2 cut(s) 286, 320
BclI TGATCA 1 cut(s) 220
BcnI CCSGG 2 cut(s) 114, 310
BcoDI GTCTC 1 cut(s) 2
BfaI CTAG 1 cut(s) 603
BfoI RGCGCY 1 cut(s) 33
BfuAI ACCTGC 2 cut(s) 262, 629
BisI GCNGC 3 cut(s) 33, 600, 622
BlsI GCNGC 3 cut(s) 34, 601, 623
Bme1390I CCNGG 2 cut(s) 114, 310
BmgT120I GGNCC 1 cut(s) 143
BmrFI CCNGG 2 cut(s) 114, 310
BmrI ACTGGG 1 cut(s) 101
BmsI GCATC 1 cut(s) 28
BmuI ACTGGG 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 582
Bpu10I CCTNAGC 1 cut(s) 389
BpuEI CTTGAG 1 cut(s) 449
BpuMI CCSGG 2 cut(s) 114, 310
BsaBI GATNNNNATC 1 cut(s) 219
BsaJI CCNNGG 3 cut(s) 308, 443, 460
BsaXI ACNNNNNCTCC 2 cut(s) 637, 667
Bsc4I CCNNNNNNNGG 6 cut(s) 39, 112, 113, 316, 415, 466
Bse118I RCCGGY 1 cut(s) 415
Bse1I ACTGG 1 cut(s) 107
Bse8I GATNNNNATC 1 cut(s) 219
BseDI CCNNGG 3 cut(s) 308, 443, 460
BseJI GATNNNNATC 1 cut(s) 219
BseLI CCNNNNNNNGG 6 cut(s) 39, 112, 113, 316, 415, 466
BseMII CTCAG 2 cut(s) 184, 380
BseNI ACTGG 1 cut(s) 107
BseRI GAGGAG 2 cut(s) 53, 549
BseSI GKGCMC 1 cut(s) 309
BseXI GCAGC 1 cut(s) 586
Bsh1236I CGCG 2 cut(s) 158, 164
BshFI GGCC 3 cut(s) 145, 415, 665
BsiHKAI GWGCWC 2 cut(s) 52, 171
BsiSI CCGG 3 cut(s) 113, 310, 416
BsiWI CGTACG 1 cut(s) 159
BslI CCNNNNNNNGG 6 cut(s) 39, 112, 113, 316, 415, 466
BsmAI GTCTC 1 cut(s) 2
BsnI GGCC 3 cut(s) 145, 415, 665
Bsp1286I GDGCHC 3 cut(s) 52, 171, 309
Bsp143I GATC 3 cut(s) 116, 220, 648
BspACI CCGC 8 cut(s) 33, 164, 383, 440, 465, 506, 621, 624
BspANI GGCC 3 cut(s) 145, 415, 665
BspCNI CTCAG 2 cut(s) 183, 381
BspFNI CGCG 2 cut(s) 158, 164
BspMI ACCTGC 2 cut(s) 262, 629
BspPI GGATC 2 cut(s) 124, 656
BsrFI RCCGGY 1 cut(s) 415
BsrI ACTGG 1 cut(s) 107
BssAI RCCGGY 1 cut(s) 415
BssECI CCNNGG 3 cut(s) 308, 443, 460
BssMI GATC 3 cut(s) 116, 220, 648
Bst4CI ACNGT 2 cut(s) 292, 410
Bst6I CTCTTC 1 cut(s) 340
BstC8I GCNNGC 1 cut(s) 417
BstDEI CTNAG 3 cut(s) 170, 185, 389
BstDSI CCRYGG 2 cut(s) 443, 460
BstEII GGTNACC 1 cut(s) 455
BstFNI CGCG 2 cut(s) 158, 164
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 3 cut(s) 119, 223, 651
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 3 cut(s) 116, 220, 648
BstMWI GCNNNNNNNGC 1 cut(s) 605
BstPI GGTNACC 1 cut(s) 455
BstSCI CCNGG 2 cut(s) 112, 308
BstSLI GKGCMC 1 cut(s) 309
BstUI CGCG 2 cut(s) 158, 164
BstV1I GCAGC 1 cut(s) 586
BstV2I GAAGAC 1 cut(s) 582
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BsuRI GGCC 3 cut(s) 145, 415, 665
BtgI CCRYGG 2 cut(s) 443, 460
BveI ACCTGC 2 cut(s) 262, 629
Cac8I GCNNGC 1 cut(s) 417
CfoI GCGC 1 cut(s) 32
Cfr10I RCCGGY 1 cut(s) 415
Cfr13I GGNCC 1 cut(s) 143
Csp6I GTAC 1 cut(s) 160
CviAII CATG 1 cut(s) 133
CviJI RGCY 9 cut(s) 50, 145, 169, 184, 210, 415, 427, 558, 665
CviKI_1 RGCY 9 cut(s) 50, 145, 169, 184, 210, 415, 427, 558, 665
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 3 cut(s) 170, 185, 389
DpnI GATC 3 cut(s) 118, 222, 650
DpnII GATC 3 cut(s) 116, 220, 648
EaeI YGGCCR 1 cut(s) 663
Eam1104I CTCTTC 1 cut(s) 340
EarI CTCTTC 1 cut(s) 340
EciI GGCGGA 1 cut(s) 429
Ecl136II GAGCTC 2 cut(s) 50, 169
Eco24I GRGCYC 2 cut(s) 52, 171
Eco53kI GAGCTC 2 cut(s) 50, 169
Eco57I CTGAAG 1 cut(s) 599
Eco91I GGTNACC 1 cut(s) 455
EcoICRI GAGCTC 2 cut(s) 50, 169
EcoO65I GGTNACC 1 cut(s) 455
EcoRI GAATTC 1 cut(s) 478
EcoT38I GRGCYC 2 cut(s) 52, 171
FaeI CATG 1 cut(s) 136
FaiI YATR 4 cut(s) 83, 134, 198, 561
FatI CATG 1 cut(s) 132
FauI CCCGC 2 cut(s) 458, 499
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 3 cut(s) 33, 600, 622
FriOI GRGCYC 2 cut(s) 52, 171
Fsp4HI GCNGC 3 cut(s) 33, 600, 622
FspBI CTAG 1 cut(s) 603
GlaI GCGC 1 cut(s) 31
GluI GCNGC 3 cut(s) 33, 600, 622
HaeII RGCGCY 1 cut(s) 33
HaeIII GGCC 3 cut(s) 145, 415, 665
HapII CCGG 3 cut(s) 113, 310, 416
HhaI GCGC 1 cut(s) 32
Hin1II CATG 1 cut(s) 136
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HinfI GANTC 6 cut(s) 56, 176, 245, 256, 436, 565
HpaII CCGG 3 cut(s) 113, 310, 416
HphI GGTGA 2 cut(s) 215, 638
Hpy188I TCNGA 4 cut(s) 121, 173, 297, 695
Hpy188III TCNNGA 3 cut(s) 53, 483, 569
Hpy99I CGWCG 1 cut(s) 424
HpyAV CCTTC 5 cut(s) 101, 183, 388, 445, 574
HpyCH4III ACNGT 2 cut(s) 292, 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 605
HpyF3I CTNAG 3 cut(s) 170, 185, 389
Hsp92II CATG 1 cut(s) 136
HspAI GCGC 1 cut(s) 30
KroI GCCGGC 1 cut(s) 415
KroNI GCCGGC 1 cut(s) 417
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 3 cut(s) 116, 220, 648
LmnI GCTCC 2 cut(s) 136, 166
Lsp1109I GCAGC 1 cut(s) 586
LweI GCATC 1 cut(s) 28
MaeI CTAG 1 cut(s) 603
MaeIII GTNAC 3 cut(s) 286, 455, 680
MalI GATC 3 cut(s) 118, 222, 650
MboI GATC 3 cut(s) 116, 220, 648
MboII GAAGA 8 cut(s) 327, 330, 333, 336, 339, 526, 582, 584
MfeI CAATTG 1 cut(s) 594
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 3 cut(s) 52, 171, 309
MluCI AATT 4 cut(s) 328, 478, 594, 613
MluI ACGCGT 1 cut(s) 156
MlyI GAGTC 3 cut(s) 250, 430, 574
MroNI GCCGGC 1 cut(s) 415
MseI TTAA 2 cut(s) 264, 612
MspI CCGG 3 cut(s) 113, 310, 416
MspR9I CCNGG 2 cut(s) 114, 310
MunI CAATTG 1 cut(s) 594
MvnI CGCG 2 cut(s) 158, 164
MwoI GCNNNNNNNGC 1 cut(s) 605
NaeI GCCGGC 1 cut(s) 417
NciI CCSGG 2 cut(s) 114, 310
NdeII GATC 3 cut(s) 116, 220, 648
NgoMIV GCCGGC 1 cut(s) 415
NlaIII CATG 1 cut(s) 136
NmeAIII GCCGAG 1 cut(s) 359
PaqCI CACCTGC 1 cut(s) 629
PdiI GCCGGC 1 cut(s) 417
PfeI GAWTC 3 cut(s) 56, 176, 245
Pfl23II CGTACG 1 cut(s) 159
PfoI TCCNGGA 1 cut(s) 112
PkrI GCNGC 3 cut(s) 34, 601, 623
PleI GAGTC 3 cut(s) 250, 430, 573
PpsI GAGTC 3 cut(s) 250, 430, 573
PshBI ATTAAT 1 cut(s) 612
Psp124BI GAGCTC 2 cut(s) 52, 171
PspEI GGTNACC 1 cut(s) 455
PspLI CGTACG 1 cut(s) 159
PspPI GGNCC 1 cut(s) 143
PsuI RGATCY 1 cut(s) 116
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SacI GAGCTC 2 cut(s) 52, 171
SaqAI TTAA 2 cut(s) 264, 612
SatI GCNGC 3 cut(s) 33, 600, 622
Sau3AI GATC 3 cut(s) 116, 220, 648
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 3 cut(s) 250, 430, 574
ScrFI CCNGG 2 cut(s) 114, 310
SduI GDGCHC 3 cut(s) 52, 171, 309
SetI ASST 8 cut(s) 52, 127, 171, 186, 276, 288, 560, 643
SfaNI GCATC 1 cut(s) 28
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 4 cut(s) 328, 478, 594, 613
SsiI CCGC 8 cut(s) 33, 164, 383, 440, 465, 506, 621, 624
SspMI CTAG 1 cut(s) 603
SstI GAGCTC 2 cut(s) 52, 171
StyD4I CCNGG 2 cut(s) 112, 308
TaaI ACNGT 2 cut(s) 292, 410
TaqI TCGA 4 cut(s) 75, 449, 476, 482
TasI AATT 4 cut(s) 328, 478, 594, 613
TauI GCSGC 2 cut(s) 35, 624
TfiI GAWTC 3 cut(s) 56, 176, 245
Tru1I TTAA 2 cut(s) 264, 612
Tru9I TTAA 2 cut(s) 264, 612
TseI GCWGC 1 cut(s) 599
VspI ATTAAT 1 cut(s) 612
XapI RAATTY 1 cut(s) 478
XcmI CCANNNNNNNNNTGG 1 cut(s) 673
XspI CTAG 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.