Prupe.3G143600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012028
Physical Location & Seq
Reverse (-)
15580578 .. 15581249
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G143600.1

Sequence Viewer

Length: 672 bp
ATGGCAGCGACAAACGGCTCTCTGCAACAAACCCATCATCAACCAAACCCTGCTTTCCAATATCTCTTCCAAGCCCTCGATCCCATCTCCCTCATTCTCTCCCAGAACCCACAACCAGACCAAGAGCCAGTCCCTCTGCGGCTCATCACAGAGAGCATCATGGAGAGAGGACCCAGATACAAAGCCTACGCGGAGCTCAGAGAAGCAAAGCTGCGAAGGAAGCATCTGAGGCCGGAAGAGGCCGAAGAACCCGAATTGAAACCGAGCCCGTTGAAGAAACAAGTCAAATTTCAGACCAATACGACCAAATCGCGTAAAGGGCCCTCTGCTGTGGCTCAATCAGTGCCTGATTTCTCCGCTGTGTTGAGAAAAGAGAACCGCAAGCCACCAACAAGGCTTCCGTCGACGCTTGAGATGACCCCGCCAGCGAAGTCCTGGTCGAAAGCGAATGGGGTTTTGTCCAATTCGCGAGGGAGTAAGTCGGCTAGCGCAGGGGAGAAGAGGTACAACAATGGCGGAGGGTTGATGGCAAGGAAGAGCTATGCGAGTATGGAGGAATTGAAGGGTTTGTCTTCTGCCGCTGCTAATGCTATTAGTGGCGAAAACAGGGGAGGGAGGAATGGGAATGGCAGAGCAATTCCCAAGACTGTTTTGGGGTACAGGCAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

24.52

Weight (kDa)

10.27

Isoelectric Point (pI)

44.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012028)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67035 AT1G67035 AT5G38300
fragaria_vesca FvH4_6g36230
malus_domestica MD09G1253700.v1.1 MD17G1245500.v1.1
prunus_persica Prupe.3G143600_v2.0.a1
pyrus_communis pycom09g16960 pycom17g24800
rosa_chinensis RchiOBHm_Chr2g0148201
rosa_laevigata RLG00000020326
rosa_multiflora Rmu_sc0001516.1_g000105
rosa_roxburghii Rroxscaffold_2G00099000
rosa_rugosa Rorug02G0404400
rosa_samantha Rh2AG463000 Rh2BG476200 Rh2CG449800 Rh2DG484900
rosa_wichuraiana Rw2G037750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 404
AccII CGCG 3 cut(s) 191, 313, 469
AciI CCGC 7 cut(s) 139, 191, 357, 379, 422, 516, 579
AclWI GGATC 1 cut(s) 74
AcsI RAATTY 1 cut(s) 287
AfaI GTAC 2 cut(s) 506, 659
AgsI TTSAA 3 cut(s) 259, 274, 562
AjnI CCWGG 1 cut(s) 434
AluBI AGCT 3 cut(s) 196, 211, 540
AluI AGCT 3 cut(s) 196, 211, 540
Alw21I GWGCWC 1 cut(s) 198
AlwI GGATC 1 cut(s) 74
AlwNI CAGNNNCTG 1 cut(s) 347
AoxI GGCC 3 cut(s) 230, 240, 320
ApaI GGGCCC 1 cut(s) 324
ApeKI GCWGC 3 cut(s) 5, 211, 581
ApoI RAATTY 1 cut(s) 287
ArsI GACNNNNNNTTYG 2 cut(s) 422, 454
AspLEI GCGC 1 cut(s) 491
AspS9I GGNCC 3 cut(s) 170, 320, 321
AsuNHI GCTAGC 1 cut(s) 485
AvaII GGWCC 1 cut(s) 170
BaeGI GKGCMC 1 cut(s) 324
BanII GRGCYC 3 cut(s) 198, 269, 324
BbsI GAAGAC 1 cut(s) 564
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 3 cut(s) 17, 198, 568
BccI CCATC 3 cut(s) 42, 92, 520
BceAI ACGGC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 436
BfaI CTAG 1 cut(s) 486
BisI GCNGC 5 cut(s) 6, 140, 212, 579, 582
BlsI GCNGC 5 cut(s) 7, 141, 213, 580, 583
Bme1390I CCNGG 1 cut(s) 436
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 3 cut(s) 170, 320, 321
BmiI GGNNCC 2 cut(s) 172, 322
BmrFI CCNGG 1 cut(s) 436
BmsI GCATC 2 cut(s) 165, 232
BmtI GCTAGC 1 cut(s) 489
BpiI GAAGAC 1 cut(s) 564
BpuEI CTTGAG 1 cut(s) 431
BsaXI ACNNNNNCTCC 2 cut(s) 488, 518
Bse1I ACTGG 1 cut(s) 128
BseBI CCWGG 1 cut(s) 436
BseMII CTCAG 2 cut(s) 211, 218
BseNI ACTGG 1 cut(s) 128
BseSI GKGCMC 1 cut(s) 324
BseXI GCAGC 3 cut(s) 17, 198, 568
Bsh1236I CGCG 3 cut(s) 191, 313, 469
BshFI GGCC 3 cut(s) 232, 242, 322
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 1 cut(s) 233
BslFI GGGAC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 3 cut(s) 232, 242, 322
Bsp120I GGGCCC 1 cut(s) 320
Bsp1286I GDGCHC 3 cut(s) 198, 269, 324
Bsp143I GATC 1 cut(s) 79
Bsp68I TCGCGA 1 cut(s) 469
BspACI CCGC 7 cut(s) 139, 191, 357, 379, 422, 516, 579
BspANI GGCC 3 cut(s) 232, 242, 322
BspCNI CTCAG 2 cut(s) 210, 219
BspFNI CGCG 3 cut(s) 191, 313, 469
BspLI GGNNCC 2 cut(s) 172, 322
BspOI GCTAGC 1 cut(s) 489
BspPI GGATC 1 cut(s) 74
BspQI GCTCTTC 1 cut(s) 530
BsrI ACTGG 1 cut(s) 128
BssMI GATC 1 cut(s) 79
Bst2UI CCWGG 1 cut(s) 436
Bst4CI ACNGT 1 cut(s) 649
Bst6I CTCTTC 4 cut(s) 71, 231, 494, 530
BstC8I GCNNGC 3 cut(s) 383, 426, 487
BstDEI CTNAG 2 cut(s) 197, 227
BstFNI CGCG 3 cut(s) 191, 313, 469
BstHHI GCGC 1 cut(s) 491
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 4 cut(s) 220, 229, 319, 587
BstNI CCWGG 1 cut(s) 436
BstSCI CCNGG 1 cut(s) 434
BstSLI GKGCMC 1 cut(s) 324
BstUI CGCG 3 cut(s) 191, 313, 469
BstV1I GCAGC 3 cut(s) 17, 198, 568
BstV2I GAAGAC 1 cut(s) 564
BsuRI GGCC 3 cut(s) 232, 242, 322
BtsIMutI CAGTG 1 cut(s) 348
BtuMI TCGCGA 1 cut(s) 469
Cac8I GCNNGC 3 cut(s) 383, 426, 487
CaiI CAGNNNCTG 1 cut(s) 347
CfoI GCGC 1 cut(s) 491
Cfr13I GGNCC 3 cut(s) 170, 320, 321
CseI GACGC 1 cut(s) 415
Csp6I GTAC 2 cut(s) 505, 658
CviAII CATG 1 cut(s) 160
CviQI GTAC 2 cut(s) 505, 658
DdeI CTNAG 2 cut(s) 197, 227
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
Eam1104I CTCTTC 4 cut(s) 71, 231, 494, 530
EarI CTCTTC 4 cut(s) 71, 231, 494, 530
EciI GGCGGA 1 cut(s) 531
Ecl136II GAGCTC 1 cut(s) 196
Eco24I GRGCYC 3 cut(s) 198, 269, 324
Eco47I GGWCC 1 cut(s) 170
Eco53kI GAGCTC 1 cut(s) 196
EcoICRI GAGCTC 1 cut(s) 196
EcoO109I RGGNCCY 3 cut(s) 170, 320, 321
EcoRII CCWGG 1 cut(s) 434
EcoT38I GRGCYC 3 cut(s) 198, 269, 324
FaeI CATG 1 cut(s) 163
FaiI YATR 3 cut(s) 161, 543, 551
FaqI GGGAC 1 cut(s) 116
FatI CATG 1 cut(s) 159
FauI CCCGC 1 cut(s) 429
FblI GTMKAC 1 cut(s) 404
Fnu4HI GCNGC 5 cut(s) 6, 140, 212, 579, 582
FriOI GRGCYC 3 cut(s) 198, 269, 324
Fsp4HI GCNGC 5 cut(s) 6, 140, 212, 579, 582
FspBI CTAG 1 cut(s) 486
GlaI GCGC 1 cut(s) 490
GluI GCNGC 5 cut(s) 6, 140, 212, 579, 582
HaeIII GGCC 3 cut(s) 232, 242, 322
HapII CCGG 1 cut(s) 233
HgaI GACGC 1 cut(s) 415
HhaI GCGC 1 cut(s) 491
Hin1II CATG 1 cut(s) 163
Hin6I GCGC 1 cut(s) 489
HinP1I GCGC 1 cut(s) 489
HincII GTYRAC 1 cut(s) 405
HindII GTYRAC 1 cut(s) 405
HpaII CCGG 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 405
Hpy188I TCNGA 4 cut(s) 200, 228, 294, 671
Hpy188III TCNNGA 1 cut(s) 468
Hpy8I GTNNAC 1 cut(s) 405
Hpy99I CGWCG 2 cut(s) 406, 409
HpyAV CCTTC 2 cut(s) 210, 556
HpyCH4III ACNGT 1 cut(s) 649
HpyCH4V TGCA 1 cut(s) 25
HpyF10VI GCNNNNNNNGC 4 cut(s) 220, 229, 319, 587
HpyF3I CTNAG 2 cut(s) 197, 227
Hsp92II CATG 1 cut(s) 163
HspAI GCGC 1 cut(s) 489
Kzo9I GATC 1 cut(s) 79
LguI GCTCTTC 1 cut(s) 530
LmnI GCTCC 1 cut(s) 193
Lsp1109I GCAGC 3 cut(s) 17, 198, 568
LweI GCATC 2 cut(s) 165, 232
MaeI CTAG 1 cut(s) 486
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 7 cut(s) 58, 248, 257, 286, 511, 547, 564
MhlI GDGCHC 3 cut(s) 198, 269, 324
MluCI AATT 5 cut(s) 254, 287, 463, 557, 636
MspA1I CMGCKG 2 cut(s) 359, 581
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 436
MvaI CCWGG 1 cut(s) 436
MvnI CGCG 3 cut(s) 191, 313, 469
MwoI GCNNNNNNNGC 4 cut(s) 220, 229, 319, 587
NdeII GATC 1 cut(s) 79
NheI GCTAGC 1 cut(s) 485
NlaIII CATG 1 cut(s) 163
NlaIV GGNNCC 2 cut(s) 172, 322
NruI TCGCGA 1 cut(s) 469
PciSI GCTCTTC 1 cut(s) 530
PkrI GCNGC 5 cut(s) 7, 141, 213, 580, 583
PpuMI RGGWCCY 1 cut(s) 170
Psp124BI GAGCTC 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 434
PspGI CCWGG 1 cut(s) 434
PspN4I GGNNCC 2 cut(s) 172, 322
PspOMI GGGCCC 1 cut(s) 320
PspPI GGNCC 3 cut(s) 170, 320, 321
PspPPI RGGWCCY 1 cut(s) 170
PsrI GAACNNNNNNTAC 1 cut(s) 650
PstNI CAGNNNCTG 1 cut(s) 347
RruI TCGCGA 1 cut(s) 469
RsaI GTAC 2 cut(s) 506, 659
RsaNI GTAC 2 cut(s) 505, 658
SacI GAGCTC 1 cut(s) 198
SalI GTCGAC 1 cut(s) 403
SapI GCTCTTC 1 cut(s) 530
SatI GCNGC 5 cut(s) 6, 140, 212, 579, 582
Sau3AI GATC 1 cut(s) 79
Sau96I GGNCC 3 cut(s) 170, 320, 321
ScrFI CCNGG 1 cut(s) 436
SduI GDGCHC 3 cut(s) 198, 269, 324
SetI ASST 4 cut(s) 198, 213, 506, 542
SfaNI GCATC 2 cut(s) 165, 232
SgrDI CGTCGACG 1 cut(s) 403
SinI GGWCC 1 cut(s) 170
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
Sse9I AATT 5 cut(s) 254, 287, 463, 557, 636
SsiI CCGC 7 cut(s) 139, 191, 357, 379, 422, 516, 579
SspMI CTAG 1 cut(s) 486
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 434
TaaI ACNGT 1 cut(s) 649
TaqI TCGA 3 cut(s) 78, 404, 440
TasI AATT 5 cut(s) 254, 287, 463, 557, 636
TauI GCSGC 2 cut(s) 142, 581
TscAI CASTG 1 cut(s) 348
TseI GCWGC 3 cut(s) 5, 211, 581
TspGWI ACGGA 1 cut(s) 390
TspRI CASTG 1 cut(s) 348
VpaK11BI GGWCC 1 cut(s) 170
XapI RAATTY 1 cut(s) 287
XcmI CCANNNNNNNNNTGG 2 cut(s) 432, 649
XmiI GTMKAC 1 cut(s) 404
XspI CTAG 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.