Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001516.1

Orthogroup ID

OG0012028

Physical Location & Seq

Genomic Coordinates Reverse (-)

436901 .. 437593

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001516.1_g000105.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atggcggagactattatgcatcaacaaagcgccgccgtagggggtagagctcttgattctctcctccacgccctcgaccccatatctctccttctctcccagaacccagttccgggatctgaacctgactacatggagcgagggccaagatacaaagcgtacgcggagctcagagaatccaagctaagaaggaagtatgagcaaatgagccaagatgatgatcagcaacttgaacaagagcaagaatcaaagccaactcctgttaagaagcaggtcaagtttcaggttactgttccgagtaatgtgccccggaaaaagggtgctggtaattcctcctcttcttctgttgttgctcaatctgtgccggatttctcagcggtgctgaggaaggagaaagagaaccgtaggccggcgacgaggcttgagatgactccgccgtggtcgaagggtaaccacggcggggtcttgtcgaattcgagagggagtaagtcggcgagtgcgggggagaagaacaggggaaataatggaggagggttgatggcaagaaagagctatgcgagtcttgaagaactgaagggtttgtcttccattgctgctggtgctattaataattgtggcagcggtgaaaacagggcaggtgggagggtcggtagagcaacggccaagaatgttttgggttacagacacttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

24.85

Weight (kDa)

9.88

Isoelectric Point (pI)

49.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67035 AT1G67035 AT5G38300
fragaria_vesca	FvH4_6g36230
malus_domestica	MD09G1253700.v1.1 MD17G1245500.v1.1
prunus_persica	Prupe.3G143600_v2.0.a1
pyrus_communis	pycom09g16960 pycom17g24800
rosa_chinensis	RchiOBHm_Chr2g0148201
rosa_laevigata	RLG00000020326
rosa_multiflora	Rmu_sc0001516.1_g000105
rosa_roxburghii	Rroxscaffold_2G00099000
rosa_rugosa	Rorug02G0404400
rosa_samantha	Rh2AG463000 Rh2BG476200 Rh2CG449800 Rh2DG484900
rosa_wichuraiana	Rw2G037750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	626
Acc36I	ACCTGC	2 cut(s)	262, 626
AccII	CGCG	1 cut(s)	164
AciI	CCGC	8 cut(s)	5, 33, 164, 377, 434, 459, 500, 621
AclWI	GGATC	1 cut(s)	124
AcoI	YGGCCR	1 cut(s)	660
AcsI	RAATTY	1 cut(s)	472
AcuI	CTGAAG	1 cut(s)	593
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	6 cut(s)	39, 112, 113, 316, 409, 460
AgsI	TTSAA	2 cut(s)	233, 566
AluBI	AGCT	4 cut(s)	50, 169, 184, 552
AluI	AGCT	4 cut(s)	50, 169, 184, 552
Alw21I	GWGCWC	2 cut(s)	52, 171
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	1 cut(s)	124
AoxI	GGCC	3 cut(s)	143, 407, 660
ApeKI	GCWGC	2 cut(s)	593, 618
ApoI	RAATTY	1 cut(s)	472
AseI	ATTAAT	1 cut(s)	606
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	143
AsuC2I	CCSGG	2 cut(s)	114, 310
AsuHPI	GGTGA	1 cut(s)	635
BaeGI	GKGCMC	1 cut(s)	309
BanII	GRGCYC	2 cut(s)	52, 171
BbsI	GAAGAC	1 cut(s)	576
Bbv12I	GWGCWC	2 cut(s)	52, 171
BbvCI	CCTCAGC	1 cut(s)	383
BbvI	GCAGC	2 cut(s)	580, 630
BccI	CCATC	1 cut(s)	532
BceAI	ACGGC	4 cut(s)	20, 421, 472, 675
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BclI	TGATCA	1 cut(s)	220
BcnI	CCSGG	2 cut(s)	114, 310
BcoDI	GTCTC	1 cut(s)	2
BfoI	RGCGCY	1 cut(s)	33
BfuAI	ACCTGC	2 cut(s)	262, 626
BisI	GCNGC	3 cut(s)	33, 594, 619
BlsI	GCNGC	3 cut(s)	34, 595, 620
Bme1390I	CCNGG	2 cut(s)	114, 310
BmgT120I	GGNCC	1 cut(s)	143
BmrFI	CCNGG	2 cut(s)	114, 310
BmrI	ACTGGG	1 cut(s)	101
BmsI	GCATC	1 cut(s)	28
BmuI	ACTGGG	1 cut(s)	101
BpiI	GAAGAC	1 cut(s)	576
Bpu10I	CCTNAGC	1 cut(s)	383
BpuEI	CTTGAG	1 cut(s)	443
BpuMI	CCSGG	2 cut(s)	114, 310
BsaBI	GATNNNNATC	1 cut(s)	219
BsaJI	CCNNGG	3 cut(s)	308, 437, 454
BsaXI	ACNNNNNCTCC	2 cut(s)	634, 664
Bsc4I	CCNNNNNNNGG	6 cut(s)	39, 112, 113, 316, 409, 460
Bse118I	RCCGGY	1 cut(s)	409
Bse1I	ACTGG	1 cut(s)	107
Bse3DI	GCAATG	1 cut(s)	588
Bse8I	GATNNNNATC	1 cut(s)	219
BseDI	CCNNGG	3 cut(s)	308, 437, 454
BseJI	GATNNNNATC	1 cut(s)	219
BseLI	CCNNNNNNNGG	6 cut(s)	39, 112, 113, 316, 409, 460
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	3 cut(s)	184, 374, 387
BseNI	ACTGG	1 cut(s)	107
BseRI	GAGGAG	3 cut(s)	53, 325, 543
BseSI	GKGCMC	1 cut(s)	309
BseXI	GCAGC	2 cut(s)	580, 630
Bsh1236I	CGCG	1 cut(s)	164
BshFI	GGCC	3 cut(s)	145, 409, 662
BsiHKAI	GWGCWC	2 cut(s)	52, 171
BsiSI	CCGG	4 cut(s)	113, 310, 365, 410
BsiWI	CGTACG	1 cut(s)	159
BslI	CCNNNNNNNGG	6 cut(s)	39, 112, 113, 316, 409, 460
BsmAI	GTCTC	1 cut(s)	2
BsnI	GGCC	3 cut(s)	145, 409, 662
Bsp1286I	GDGCHC	3 cut(s)	52, 171, 309
Bsp143I	GATC	2 cut(s)	116, 220
BspACI	CCGC	8 cut(s)	5, 33, 164, 377, 434, 459, 500, 621
BspANI	GGCC	3 cut(s)	145, 409, 662
BspCNI	CTCAG	3 cut(s)	183, 375, 386
BspFNI	CGCG	1 cut(s)	164
BspMI	ACCTGC	2 cut(s)	262, 626
BspPI	GGATC	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	588
BsrFI	RCCGGY	1 cut(s)	409
BsrI	ACTGG	1 cut(s)	107
BssAI	RCCGGY	1 cut(s)	409
BssECI	CCNNGG	3 cut(s)	308, 437, 454
BssMI	GATC	2 cut(s)	116, 220
Bst4CI	ACNGT	2 cut(s)	292, 404
Bst6I	CTCTTC	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	411
BstDEI	CTNAG	4 cut(s)	170, 185, 373, 383
BstDSI	CCRYGG	2 cut(s)	437, 454
BstEII	GGTNACC	1 cut(s)	449
BstFNI	CGCG	1 cut(s)	164
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	2 cut(s)	119, 223
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	2 cut(s)	116, 220
BstMWI	GCNNNNNNNGC	1 cut(s)	599
BstPI	GGTNACC	1 cut(s)	449
BstSCI	CCNGG	2 cut(s)	112, 308
BstSLI	GKGCMC	1 cut(s)	309
BstUI	CGCG	1 cut(s)	164
BstV1I	GCAGC	2 cut(s)	580, 630
BstV2I	GAAGAC	1 cut(s)	576
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
BsuRI	GGCC	3 cut(s)	145, 409, 662
BtgI	CCRYGG	2 cut(s)	437, 454
BveI	ACCTGC	2 cut(s)	262, 626
Cac8I	GCNNGC	1 cut(s)	411
CfoI	GCGC	1 cut(s)	32
Cfr10I	RCCGGY	1 cut(s)	409
Cfr13I	GGNCC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	1 cut(s)	133
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	4 cut(s)	170, 185, 373, 383
DpnI	GATC	2 cut(s)	118, 222
DpnII	GATC	2 cut(s)	116, 220
EaeI	YGGCCR	1 cut(s)	660
Eam1104I	CTCTTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	343
EciI	GGCGGA	2 cut(s)	20, 423
Ecl136II	GAGCTC	2 cut(s)	50, 169
Eco24I	GRGCYC	2 cut(s)	52, 171
Eco53kI	GAGCTC	2 cut(s)	50, 169
Eco57I	CTGAAG	1 cut(s)	593
Eco91I	GGTNACC	1 cut(s)	449
EcoICRI	GAGCTC	2 cut(s)	50, 169
EcoO65I	GGTNACC	1 cut(s)	449
EcoRI	GAATTC	1 cut(s)	472
EcoT22I	ATGCAT	1 cut(s)	21
EcoT38I	GRGCYC	2 cut(s)	52, 171
FaeI	CATG	1 cut(s)	136
FaiI	YATR	5 cut(s)	17, 83, 134, 198, 555
FatI	CATG	1 cut(s)	132
FauI	CCCGC	2 cut(s)	452, 493
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	3 cut(s)	33, 594, 619
FriOI	GRGCYC	2 cut(s)	52, 171
Fsp4HI	GCNGC	3 cut(s)	33, 594, 619
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	3 cut(s)	33, 594, 619
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	3 cut(s)	145, 409, 662
HapII	CCGG	4 cut(s)	113, 310, 365, 410
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	1 cut(s)	136
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HinfI	GANTC	5 cut(s)	56, 176, 245, 430, 559
HpaII	CCGG	4 cut(s)	113, 310, 365, 410
HphI	GGTGA	1 cut(s)	635
Hpy188I	TCNGA	4 cut(s)	121, 173, 297, 692
Hpy188III	TCNNGA	3 cut(s)	53, 477, 563
Hpy99I	CGWCG	1 cut(s)	418
HpyAV	CCTTC	5 cut(s)	101, 183, 382, 439, 568
HpyCH4III	ACNGT	2 cut(s)	292, 404
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	1 cut(s)	599
HpyF3I	CTNAG	4 cut(s)	170, 185, 373, 383
Hsp92II	CATG	1 cut(s)	136
HspAI	GCGC	1 cut(s)	30
KroI	GCCGGC	1 cut(s)	409
KroNI	GCCGGC	1 cut(s)	411
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	2 cut(s)	116, 220
LmnI	GCTCC	2 cut(s)	136, 166
Lsp1109I	GCAGC	2 cut(s)	580, 630
LweI	GCATC	1 cut(s)	28
MaeIII	GTNAC	3 cut(s)	286, 449, 677
MalI	GATC	2 cut(s)	118, 222
MboI	GATC	2 cut(s)	116, 220
MboII	GAAGA	5 cut(s)	330, 333, 520, 576, 578
MflI	RGATCY	1 cut(s)	116
MhlI	GDGCHC	3 cut(s)	52, 171, 309
MluCI	AATT	3 cut(s)	328, 472, 610
MlyI	GAGTC	2 cut(s)	424, 568
Mph1103I	ATGCAT	1 cut(s)	21
MroNI	GCCGGC	1 cut(s)	409
MseI	TTAA	2 cut(s)	264, 606
MspA1I	CMGCKG	2 cut(s)	377, 621
MspI	CCGG	4 cut(s)	113, 310, 365, 410
MspR9I	CCNGG	2 cut(s)	114, 310
MvnI	CGCG	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	599
NaeI	GCCGGC	1 cut(s)	411
NciI	CCSGG	2 cut(s)	114, 310
NdeII	GATC	2 cut(s)	116, 220
NgoMIV	GCCGGC	1 cut(s)	409
NlaIII	CATG	1 cut(s)	136
NsiI	ATGCAT	1 cut(s)	21
PaqCI	CACCTGC	1 cut(s)	626
PdiI	GCCGGC	1 cut(s)	411
PfeI	GAWTC	3 cut(s)	56, 176, 245
Pfl23II	CGTACG	1 cut(s)	159
PfoI	TCCNGGA	1 cut(s)	112
PkrI	GCNGC	3 cut(s)	34, 595, 620
PleI	GAGTC	2 cut(s)	424, 567
PpsI	GAGTC	2 cut(s)	424, 567
PshBI	ATTAAT	1 cut(s)	606
Psp124BI	GAGCTC	2 cut(s)	52, 171
PspEI	GGTNACC	1 cut(s)	449
PspLI	CGTACG	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	143
PsuI	RGATCY	1 cut(s)	116
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SacI	GAGCTC	2 cut(s)	52, 171
SaqAI	TTAA	2 cut(s)	264, 606
SatI	GCNGC	3 cut(s)	33, 594, 619
Sau3AI	GATC	2 cut(s)	116, 220
Sau96I	GGNCC	1 cut(s)	143
SchI	GAGTC	2 cut(s)	424, 568
ScrFI	CCNGG	2 cut(s)	114, 310
SduI	GDGCHC	3 cut(s)	52, 171, 309
SetI	ASST	8 cut(s)	52, 127, 171, 186, 276, 288, 554, 640
SfaNI	GCATC	1 cut(s)	28
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	3 cut(s)	328, 472, 610
SsiI	CCGC	8 cut(s)	5, 33, 164, 377, 434, 459, 500, 621
SstI	GAGCTC	2 cut(s)	52, 171
StyD4I	CCNGG	2 cut(s)	112, 308
TaaI	ACNGT	2 cut(s)	292, 404
TaqI	TCGA	4 cut(s)	75, 443, 470, 476
TasI	AATT	3 cut(s)	328, 472, 610
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	3 cut(s)	56, 176, 245
Tru1I	TTAA	2 cut(s)	264, 606
Tru9I	TTAA	2 cut(s)	264, 606
TseI	GCWGC	2 cut(s)	593, 618
VspI	ATTAAT	1 cut(s)	606
XapI	RAATTY	1 cut(s)	472
XcmI	CCANNNNNNNNNTGG	1 cut(s)	670
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.