RchiOBHm_Chr2g0148201

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0012028
Physical Location & Seq
Reverse (-)
65827512 .. 65828367
856 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51778

Sequence Viewer

Length: 675 bp
ATGCATCCACAAAGCGCCGCCGTAGGGGGTAGAGCTCTTGATTCTCTCCTCCACGCCCTCGACCCCATATCTCTCCTTCTCTCCCAGAACCCAGTTCCGGGATCTGAACCTGACTACATGGAGCGAGGGCCAAGATACAAAGCGTACGCGGAGCTCAGAGAATCCAAGCTAAGAAGGAAGTATGAGCAAATGAGCCACGATGATGATCAGCAACTTGAACAAGAGCAAGAATCAAAGCCGACTCCTGTTAAGAAGCAGGTCAAGTTTCAGGTTACTGTTCCGAGTAATGTGCCCCGGAAAAAGGGTGCTGGTAATTCCTCCTCTTCTTCTGTTGTTGCTCAATCTGTGCCGGATTTCTCAGCGGTGCTGAGGAAGGAGAAAGAGAACCGTAGGCCGGCGACGAGGCTTGAGATGACTCCGCCGTGGTCGAAGGGTAACCACGGCGGGGTTTTGTCGAATTCGAGAGGGAGTAAGTCGGCGAGTGCGGGGGAGAAGAACAGGGGCAATAATGGAGGAGGGTTGATGGCAAGAAAGAGCTATGCGAGTCTTGAAGAACTGAAGGGTTTGTCTTCCATTGCTGCTAGTGCTATTAATTGTGGCGGCGGTGAAAACAGGGCAGGTGGGAGGGTCGGTCGAGCAACGGCCAAGAATGTTTTGGGTTACAGACACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

24.17

Weight (kDa)

9.96

Isoelectric Point (pI)

49.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012028)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67035 AT1G67035 AT5G38300
fragaria_vesca FvH4_6g36230
malus_domestica MD09G1253700.v1.1 MD17G1245500.v1.1
prunus_persica Prupe.3G143600_v2.0.a1
pyrus_communis pycom09g16960 pycom17g24800
rosa_chinensis RchiOBHm_Chr2g0148201
rosa_laevigata RLG00000020326
rosa_multiflora Rmu_sc0001516.1_g000105
rosa_roxburghii Rroxscaffold_2G00099000
rosa_rugosa Rorug02G0404400
rosa_samantha Rh2AG463000 Rh2BG476200 Rh2CG449800 Rh2DG484900
rosa_wichuraiana Rw2G037750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 608
Acc36I ACCTGC 2 cut(s) 247, 608
AccII CGCG 1 cut(s) 149
AciI CCGC 8 cut(s) 18, 149, 362, 419, 444, 485, 600, 603
AclWI GGATC 1 cut(s) 109
AcoI YGGCCR 1 cut(s) 642
AcsI RAATTY 1 cut(s) 457
AcuI CTGAAG 1 cut(s) 578
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 6 cut(s) 24, 97, 98, 301, 394, 445
AgsI TTSAA 2 cut(s) 218, 551
AluBI AGCT 4 cut(s) 35, 154, 169, 537
AluI AGCT 4 cut(s) 35, 154, 169, 537
Alw21I GWGCWC 2 cut(s) 37, 156
AlwI GGATC 1 cut(s) 109
AoxI GGCC 3 cut(s) 128, 392, 642
ApeKI GCWGC 1 cut(s) 578
ApoI RAATTY 1 cut(s) 457
AseI ATTAAT 1 cut(s) 591
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 128
AsuC2I CCSGG 2 cut(s) 99, 295
AsuHPI GGTGA 1 cut(s) 617
BaeGI GKGCMC 1 cut(s) 294
BanII GRGCYC 2 cut(s) 37, 156
BbsI GAAGAC 1 cut(s) 561
Bbv12I GWGCWC 2 cut(s) 37, 156
BbvCI CCTCAGC 1 cut(s) 368
BbvI GCAGC 1 cut(s) 565
BccI CCATC 1 cut(s) 517
BceAI ACGGC 4 cut(s) 5, 406, 457, 657
BcgI CGANNNNNNTGC 2 cut(s) 271, 305
BclI TGATCA 1 cut(s) 205
BcnI CCSGG 2 cut(s) 99, 295
BfaI CTAG 1 cut(s) 582
BfoI RGCGCY 1 cut(s) 18
BfuAI ACCTGC 2 cut(s) 247, 608
BisI GCNGC 3 cut(s) 18, 579, 601
BlsI GCNGC 3 cut(s) 19, 580, 602
Bme1390I CCNGG 2 cut(s) 99, 295
BmgT120I GGNCC 1 cut(s) 128
BmrFI CCNGG 2 cut(s) 99, 295
BmrI ACTGGG 1 cut(s) 86
BmsI GCATC 1 cut(s) 13
BmuI ACTGGG 1 cut(s) 86
BpiI GAAGAC 1 cut(s) 561
Bpu10I CCTNAGC 1 cut(s) 368
BpuEI CTTGAG 1 cut(s) 428
BpuMI CCSGG 2 cut(s) 99, 295
BsaBI GATNNNNATC 1 cut(s) 204
BsaJI CCNNGG 3 cut(s) 293, 422, 439
BsaXI ACNNNNNCTCC 2 cut(s) 616, 646
Bsc4I CCNNNNNNNGG 6 cut(s) 24, 97, 98, 301, 394, 445
Bse118I RCCGGY 1 cut(s) 394
Bse1I ACTGG 1 cut(s) 92
Bse3DI GCAATG 1 cut(s) 573
Bse8I GATNNNNATC 1 cut(s) 204
BseDI CCNNGG 3 cut(s) 293, 422, 439
BseGI GGATG 1 cut(s) 4
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 6 cut(s) 24, 97, 98, 301, 394, 445
BseMI GCAATG 1 cut(s) 573
BseMII CTCAG 3 cut(s) 169, 359, 372
BseNI ACTGG 1 cut(s) 92
BseRI GAGGAG 3 cut(s) 38, 310, 528
BseSI GKGCMC 1 cut(s) 294
BseXI GCAGC 1 cut(s) 565
Bsh1236I CGCG 1 cut(s) 149
Bsh1285I CGRYCG 1 cut(s) 634
BshFI GGCC 3 cut(s) 130, 394, 644
BsiEI CGRYCG 1 cut(s) 634
BsiHKAI GWGCWC 2 cut(s) 37, 156
BsiSI CCGG 4 cut(s) 98, 295, 350, 395
BsiWI CGTACG 1 cut(s) 144
BslI CCNNNNNNNGG 6 cut(s) 24, 97, 98, 301, 394, 445
BsnI GGCC 3 cut(s) 130, 394, 644
Bsp1286I GDGCHC 3 cut(s) 37, 156, 294
Bsp143I GATC 2 cut(s) 101, 205
BspACI CCGC 8 cut(s) 18, 149, 362, 419, 444, 485, 600, 603
BspANI GGCC 3 cut(s) 130, 394, 644
BspCNI CTCAG 3 cut(s) 168, 360, 371
BspFNI CGCG 1 cut(s) 149
BspMI ACCTGC 2 cut(s) 247, 608
BspPI GGATC 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 573
BsrFI RCCGGY 1 cut(s) 394
BsrI ACTGG 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 394
BssECI CCNNGG 3 cut(s) 293, 422, 439
BssMI GATC 2 cut(s) 101, 205
Bst4CI ACNGT 2 cut(s) 277, 389
Bst6I CTCTTC 1 cut(s) 328
BstC8I GCNNGC 1 cut(s) 396
BstDEI CTNAG 4 cut(s) 155, 170, 358, 368
BstDSI CCRYGG 2 cut(s) 422, 439
BstEII GGTNACC 1 cut(s) 434
BstF5I GGATG 1 cut(s) 4
BstFNI CGCG 1 cut(s) 149
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 2 cut(s) 104, 208
BstMBI GATC 2 cut(s) 101, 205
BstMCI CGRYCG 1 cut(s) 634
BstMWI GCNNNNNNNGC 1 cut(s) 584
BstPI GGTNACC 1 cut(s) 434
BstSCI CCNGG 2 cut(s) 97, 293
BstSLI GKGCMC 1 cut(s) 294
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 1 cut(s) 565
BstV2I GAAGAC 1 cut(s) 561
BstX2I RGATCY 1 cut(s) 101
BstYI RGATCY 1 cut(s) 101
BsuRI GGCC 3 cut(s) 130, 394, 644
BtgI CCRYGG 2 cut(s) 422, 439
BtsCI GGATG 1 cut(s) 4
BveI ACCTGC 2 cut(s) 247, 608
Cac8I GCNNGC 1 cut(s) 396
CfoI GCGC 1 cut(s) 17
Cfr10I RCCGGY 1 cut(s) 394
Cfr13I GGNCC 1 cut(s) 128
Csp6I GTAC 1 cut(s) 145
CviAII CATG 1 cut(s) 118
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 4 cut(s) 155, 170, 358, 368
DpnI GATC 2 cut(s) 103, 207
DpnII GATC 2 cut(s) 101, 205
EaeI YGGCCR 1 cut(s) 642
Eam1104I CTCTTC 1 cut(s) 328
EarI CTCTTC 1 cut(s) 328
EciI GGCGGA 1 cut(s) 408
Ecl136II GAGCTC 2 cut(s) 35, 154
Eco24I GRGCYC 2 cut(s) 37, 156
Eco53kI GAGCTC 2 cut(s) 35, 154
Eco57I CTGAAG 1 cut(s) 578
Eco91I GGTNACC 1 cut(s) 434
EcoICRI GAGCTC 2 cut(s) 35, 154
EcoO65I GGTNACC 1 cut(s) 434
EcoRI GAATTC 1 cut(s) 457
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 37, 156
FaeI CATG 1 cut(s) 121
FaiI YATR 4 cut(s) 68, 119, 183, 540
FatI CATG 1 cut(s) 117
FauI CCCGC 2 cut(s) 437, 478
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 3 cut(s) 18, 579, 601
FriOI GRGCYC 2 cut(s) 37, 156
Fsp4HI GCNGC 3 cut(s) 18, 579, 601
FspBI CTAG 1 cut(s) 582
GlaI GCGC 1 cut(s) 16
GluI GCNGC 3 cut(s) 18, 579, 601
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 3 cut(s) 130, 394, 644
HapII CCGG 4 cut(s) 98, 295, 350, 395
HhaI GCGC 1 cut(s) 17
Hin1II CATG 1 cut(s) 121
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HinfI GANTC 6 cut(s) 41, 161, 230, 241, 415, 544
HpaII CCGG 4 cut(s) 98, 295, 350, 395
HphI GGTGA 1 cut(s) 617
Hpy188I TCNGA 4 cut(s) 106, 158, 282, 674
Hpy188III TCNNGA 3 cut(s) 38, 462, 548
Hpy99I CGWCG 1 cut(s) 403
HpyAV CCTTC 5 cut(s) 86, 168, 367, 424, 553
HpyCH4III ACNGT 2 cut(s) 277, 389
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 584
HpyF3I CTNAG 4 cut(s) 155, 170, 358, 368
Hsp92II CATG 1 cut(s) 121
HspAI GCGC 1 cut(s) 15
KroI GCCGGC 1 cut(s) 394
KroNI GCCGGC 1 cut(s) 396
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 2 cut(s) 101, 205
LmnI GCTCC 2 cut(s) 121, 151
Lsp1109I GCAGC 1 cut(s) 565
LweI GCATC 1 cut(s) 13
MaeI CTAG 1 cut(s) 582
MaeIII GTNAC 3 cut(s) 271, 434, 659
MalI GATC 2 cut(s) 103, 207
MboI GATC 2 cut(s) 101, 205
MboII GAAGA 5 cut(s) 315, 318, 505, 561, 563
MflI RGATCY 1 cut(s) 101
MhlI GDGCHC 3 cut(s) 37, 156, 294
MluCI AATT 3 cut(s) 313, 457, 592
MlyI GAGTC 3 cut(s) 235, 409, 553
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 394
MseI TTAA 2 cut(s) 249, 591
MslI CAYNNNNRTG 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 4 cut(s) 98, 295, 350, 395
MspR9I CCNGG 2 cut(s) 99, 295
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 584
NaeI GCCGGC 1 cut(s) 396
NciI CCSGG 2 cut(s) 99, 295
NdeII GATC 2 cut(s) 101, 205
NgoMIV GCCGGC 1 cut(s) 394
NlaIII CATG 1 cut(s) 121
NsiI ATGCAT 1 cut(s) 6
PaqCI CACCTGC 1 cut(s) 608
PdiI GCCGGC 1 cut(s) 396
PfeI GAWTC 3 cut(s) 41, 161, 230
Pfl23II CGTACG 1 cut(s) 144
PfoI TCCNGGA 1 cut(s) 97
PkrI GCNGC 3 cut(s) 19, 580, 602
PleI GAGTC 3 cut(s) 235, 409, 552
PpsI GAGTC 3 cut(s) 235, 409, 552
PshBI ATTAAT 1 cut(s) 591
Psp124BI GAGCTC 2 cut(s) 37, 156
PspEI GGTNACC 1 cut(s) 434
PspLI CGTACG 1 cut(s) 144
PspPI GGNCC 1 cut(s) 128
PsuI RGATCY 1 cut(s) 101
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
RseI CAYNNNNRTG 1 cut(s) 201
SacI GAGCTC 2 cut(s) 37, 156
SaqAI TTAA 2 cut(s) 249, 591
SatI GCNGC 3 cut(s) 18, 579, 601
Sau3AI GATC 2 cut(s) 101, 205
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 3 cut(s) 235, 409, 553
ScrFI CCNGG 2 cut(s) 99, 295
SduI GDGCHC 3 cut(s) 37, 156, 294
SetI ASST 8 cut(s) 37, 112, 156, 171, 261, 273, 539, 622
SfaNI GCATC 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 3 cut(s) 313, 457, 592
SsiI CCGC 8 cut(s) 18, 149, 362, 419, 444, 485, 600, 603
SspMI CTAG 1 cut(s) 582
SstI GAGCTC 2 cut(s) 37, 156
StyD4I CCNGG 2 cut(s) 97, 293
TaaI ACNGT 2 cut(s) 277, 389
TaqI TCGA 5 cut(s) 60, 428, 455, 461, 634
TaqII GACCGA 1 cut(s) 620
TasI AATT 3 cut(s) 313, 457, 592
TauI GCSGC 2 cut(s) 20, 603
TfiI GAWTC 3 cut(s) 41, 161, 230
Tru1I TTAA 2 cut(s) 249, 591
Tru9I TTAA 2 cut(s) 249, 591
TseI GCWGC 1 cut(s) 578
VspI ATTAAT 1 cut(s) 591
XapI RAATTY 1 cut(s) 457
XcmI CCANNNNNNNNNTGG 1 cut(s) 652
XspI CTAG 1 cut(s) 582
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.