Rw2G037750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0012028
Physical Location & Seq
Reverse (-)
62331214 .. 62331902
689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G037750.1

Sequence Viewer

Length: 648 bp
ATGGCGGAGACTATCATGCATCAACAAAGCGCCGCCGTAGGGGGTAGAGCTCTTGATTCTCTCCTCCACGCCCTCGACCCCATATCTCTCCTTCTCTCCCAGAACCCAGTTCCGGGATCTGAACCTGACTGCATGGAGCGAGGGCCAAGATACAAAGCGTACGCGGAGCTCAGAGAATCCAAGCTAAGAAGGAAGTATGAGCAAATGAGCCAAGATGATGATCAGCAACTTGAACAAGAGCAAGAGTCAAAACCGACTCCTGTTAAGAAGCAGGTCAAGTTTCAGGTTACTGTTCCGAGTAATGTGCCCCGGAAAAGGGGTGCTGGTAATTCCTCCTCTTCTTCTGTTGTTGCTCAATCTGTGCCGGATTTCTCAGCGGTGCTGAGGAAGGAGAAAGAGAACCGTAGGCCGGCGACGAGGCTTGAGATGACTCCGCCGTGGTCGAAGGGTAACCACGGCGGGGTTTTGTCGAATTCGAGAGGGAGTAAGAGGGTTGATGCAAGAAAGAGCTATGCGAGTCTTGAAGAACTGAAGGGTTTGTCTTCCATTGCTGCTAGTGCTATTAATTGTGGCGGCGGTGAAAACAGGGCAGGTGGGAGGGTCGGTAGAGCAACGGCCAAGAATGTTTTGGGTTACAGACACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

23.47

Weight (kDa)

9.84

Isoelectric Point (pI)

55.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012028)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67035 AT1G67035 AT5G38300
fragaria_vesca FvH4_6g36230
malus_domestica MD09G1253700.v1.1 MD17G1245500.v1.1
prunus_persica Prupe.3G143600_v2.0.a1
pyrus_communis pycom09g16960 pycom17g24800
rosa_chinensis RchiOBHm_Chr2g0148201
rosa_laevigata RLG00000020326
rosa_multiflora Rmu_sc0001516.1_g000105
rosa_roxburghii Rroxscaffold_2G00099000
rosa_rugosa Rorug02G0404400
rosa_samantha Rh2AG463000 Rh2BG476200 Rh2CG449800 Rh2DG484900
rosa_wichuraiana Rw2G037750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 581
Acc36I ACCTGC 2 cut(s) 262, 581
AccII CGCG 1 cut(s) 164
AciI CCGC 8 cut(s) 5, 33, 164, 377, 434, 459, 573, 576
AclWI GGATC 1 cut(s) 124
AcoI YGGCCR 1 cut(s) 615
AcsI RAATTY 1 cut(s) 472
AcuI CTGAAG 1 cut(s) 551
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 7 cut(s) 39, 112, 113, 315, 316, 409, 460
AgsI TTSAA 2 cut(s) 233, 524
AluBI AGCT 4 cut(s) 50, 169, 184, 510
AluI AGCT 4 cut(s) 50, 169, 184, 510
Alw21I GWGCWC 2 cut(s) 52, 171
Alw26I GTCTC 1 cut(s) 2
AlwI GGATC 1 cut(s) 124
AoxI GGCC 3 cut(s) 143, 407, 615
ApeKI GCWGC 1 cut(s) 551
ApoI RAATTY 1 cut(s) 472
AseI ATTAAT 1 cut(s) 564
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 143
AsuC2I CCSGG 2 cut(s) 114, 310
AsuHPI GGTGA 1 cut(s) 590
BaeGI GKGCMC 1 cut(s) 309
BanII GRGCYC 2 cut(s) 52, 171
BbsI GAAGAC 1 cut(s) 534
Bbv12I GWGCWC 2 cut(s) 52, 171
BbvCI CCTCAGC 1 cut(s) 383
BbvI GCAGC 1 cut(s) 538
BceAI ACGGC 4 cut(s) 20, 421, 472, 630
BcgI CGANNNNNNTGC 2 cut(s) 286, 320
BclI TGATCA 1 cut(s) 220
BcnI CCSGG 2 cut(s) 114, 310
BcoDI GTCTC 1 cut(s) 2
BfaI CTAG 1 cut(s) 555
BfoI RGCGCY 1 cut(s) 33
BfuAI ACCTGC 2 cut(s) 262, 581
BisI GCNGC 3 cut(s) 33, 552, 574
BlsI GCNGC 3 cut(s) 34, 553, 575
Bme1390I CCNGG 2 cut(s) 114, 310
BmgT120I GGNCC 1 cut(s) 143
BmrFI CCNGG 2 cut(s) 114, 310
BmrI ACTGGG 1 cut(s) 101
BmsI GCATC 2 cut(s) 28, 487
BmuI ACTGGG 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 534
Bpu10I CCTNAGC 1 cut(s) 383
BpuEI CTTGAG 1 cut(s) 443
BpuMI CCSGG 2 cut(s) 114, 310
BsaBI GATNNNNATC 1 cut(s) 219
BsaJI CCNNGG 3 cut(s) 308, 437, 454
BsaXI ACNNNNNCTCC 2 cut(s) 589, 619
Bsc4I CCNNNNNNNGG 7 cut(s) 39, 112, 113, 315, 316, 409, 460
Bse118I RCCGGY 1 cut(s) 409
Bse1I ACTGG 1 cut(s) 107
Bse3DI GCAATG 1 cut(s) 546
Bse8I GATNNNNATC 1 cut(s) 219
BseDI CCNNGG 3 cut(s) 308, 437, 454
BseJI GATNNNNATC 1 cut(s) 219
BseLI CCNNNNNNNGG 7 cut(s) 39, 112, 113, 315, 316, 409, 460
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 3 cut(s) 184, 374, 387
BseNI ACTGG 1 cut(s) 107
BseRI GAGGAG 2 cut(s) 53, 325
BseSI GKGCMC 1 cut(s) 309
BseXI GCAGC 1 cut(s) 538
Bsh1236I CGCG 1 cut(s) 164
BshFI GGCC 3 cut(s) 145, 409, 617
BsiHKAI GWGCWC 2 cut(s) 52, 171
BsiSI CCGG 4 cut(s) 113, 310, 365, 410
BsiWI CGTACG 1 cut(s) 159
BslI CCNNNNNNNGG 7 cut(s) 39, 112, 113, 315, 316, 409, 460
BsmAI GTCTC 1 cut(s) 2
BsnI GGCC 3 cut(s) 145, 409, 617
Bsp1286I GDGCHC 3 cut(s) 52, 171, 309
Bsp143I GATC 2 cut(s) 116, 220
BspACI CCGC 8 cut(s) 5, 33, 164, 377, 434, 459, 573, 576
BspANI GGCC 3 cut(s) 145, 409, 617
BspCNI CTCAG 3 cut(s) 183, 375, 386
BspFNI CGCG 1 cut(s) 164
BspMI ACCTGC 2 cut(s) 262, 581
BspPI GGATC 1 cut(s) 124
BsrDI GCAATG 1 cut(s) 546
BsrFI RCCGGY 1 cut(s) 409
BsrI ACTGG 1 cut(s) 107
BssAI RCCGGY 1 cut(s) 409
BssECI CCNNGG 3 cut(s) 308, 437, 454
BssMI GATC 2 cut(s) 116, 220
Bst4CI ACNGT 2 cut(s) 292, 404
Bst6I CTCTTC 1 cut(s) 343
BstC8I GCNNGC 1 cut(s) 411
BstDEI CTNAG 4 cut(s) 170, 185, 373, 383
BstDSI CCRYGG 2 cut(s) 437, 454
BstEII GGTNACC 1 cut(s) 449
BstFNI CGCG 1 cut(s) 164
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 2 cut(s) 119, 223
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 2 cut(s) 116, 220
BstMWI GCNNNNNNNGC 1 cut(s) 557
BstPI GGTNACC 1 cut(s) 449
BstSCI CCNGG 2 cut(s) 112, 308
BstSLI GKGCMC 1 cut(s) 309
BstUI CGCG 1 cut(s) 164
BstV1I GCAGC 1 cut(s) 538
BstV2I GAAGAC 1 cut(s) 534
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BsuRI GGCC 3 cut(s) 145, 409, 617
BtgI CCRYGG 2 cut(s) 437, 454
BveI ACCTGC 2 cut(s) 262, 581
Cac8I GCNNGC 1 cut(s) 411
CfoI GCGC 1 cut(s) 32
Cfr10I RCCGGY 1 cut(s) 409
Cfr13I GGNCC 1 cut(s) 143
Csp6I GTAC 1 cut(s) 160
CviAII CATG 2 cut(s) 16, 133
CviJI RGCY 9 cut(s) 50, 145, 169, 184, 210, 409, 421, 510, 617
CviKI_1 RGCY 9 cut(s) 50, 145, 169, 184, 210, 409, 421, 510, 617
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 4 cut(s) 170, 185, 373, 383
DpnI GATC 2 cut(s) 118, 222
DpnII GATC 2 cut(s) 116, 220
EaeI YGGCCR 1 cut(s) 615
Eam1104I CTCTTC 1 cut(s) 343
EarI CTCTTC 1 cut(s) 343
EciI GGCGGA 2 cut(s) 20, 423
Ecl136II GAGCTC 2 cut(s) 50, 169
Eco24I GRGCYC 2 cut(s) 52, 171
Eco53kI GAGCTC 2 cut(s) 50, 169
Eco57I CTGAAG 1 cut(s) 551
Eco91I GGTNACC 1 cut(s) 449
EcoICRI GAGCTC 2 cut(s) 50, 169
EcoO65I GGTNACC 1 cut(s) 449
EcoRI GAATTC 1 cut(s) 472
EcoT22I ATGCAT 1 cut(s) 21
EcoT38I GRGCYC 2 cut(s) 52, 171
FaeI CATG 2 cut(s) 19, 136
FaiI YATR 5 cut(s) 17, 83, 134, 198, 513
FatI CATG 2 cut(s) 15, 132
FauI CCCGC 1 cut(s) 452
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 3 cut(s) 33, 552, 574
FriOI GRGCYC 2 cut(s) 52, 171
Fsp4HI GCNGC 3 cut(s) 33, 552, 574
FspBI CTAG 1 cut(s) 555
GlaI GCGC 1 cut(s) 31
GluI GCNGC 3 cut(s) 33, 552, 574
HaeII RGCGCY 1 cut(s) 33
HaeIII GGCC 3 cut(s) 145, 409, 617
HapII CCGG 4 cut(s) 113, 310, 365, 410
HhaI GCGC 1 cut(s) 32
Hin1II CATG 2 cut(s) 19, 136
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HinfI GANTC 6 cut(s) 56, 176, 245, 256, 430, 517
HpaII CCGG 4 cut(s) 113, 310, 365, 410
HphI GGTGA 1 cut(s) 590
Hpy188I TCNGA 4 cut(s) 121, 173, 297, 647
Hpy188III TCNNGA 3 cut(s) 53, 477, 521
Hpy99I CGWCG 1 cut(s) 418
HpyAV CCTTC 5 cut(s) 101, 183, 382, 439, 526
HpyCH4III ACNGT 2 cut(s) 292, 404
HpyCH4V TGCA 3 cut(s) 19, 132, 500
HpyF10VI GCNNNNNNNGC 1 cut(s) 557
HpyF3I CTNAG 4 cut(s) 170, 185, 373, 383
Hsp92II CATG 2 cut(s) 19, 136
HspAI GCGC 1 cut(s) 30
KroI GCCGGC 1 cut(s) 409
KroNI GCCGGC 1 cut(s) 411
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 2 cut(s) 116, 220
LmnI GCTCC 2 cut(s) 136, 166
Lsp1109I GCAGC 1 cut(s) 538
LweI GCATC 2 cut(s) 28, 487
MaeI CTAG 1 cut(s) 555
MaeIII GTNAC 3 cut(s) 286, 449, 632
MalI GATC 2 cut(s) 118, 222
MboI GATC 2 cut(s) 116, 220
MboII GAAGA 4 cut(s) 330, 333, 534, 536
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 3 cut(s) 52, 171, 309
MluCI AATT 3 cut(s) 328, 472, 565
MlyI GAGTC 4 cut(s) 250, 254, 424, 526
Mph1103I ATGCAT 1 cut(s) 21
MroNI GCCGGC 1 cut(s) 409
MseI TTAA 2 cut(s) 264, 564
MspA1I CMGCKG 1 cut(s) 377
MspI CCGG 4 cut(s) 113, 310, 365, 410
MspR9I CCNGG 2 cut(s) 114, 310
MvnI CGCG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 557
NaeI GCCGGC 1 cut(s) 411
NciI CCSGG 2 cut(s) 114, 310
NdeII GATC 2 cut(s) 116, 220
NgoMIV GCCGGC 1 cut(s) 409
NlaIII CATG 2 cut(s) 19, 136
NsiI ATGCAT 1 cut(s) 21
PaqCI CACCTGC 1 cut(s) 581
PdiI GCCGGC 1 cut(s) 411
PfeI GAWTC 2 cut(s) 56, 176
Pfl23II CGTACG 1 cut(s) 159
PfoI TCCNGGA 1 cut(s) 112
PkrI GCNGC 3 cut(s) 34, 553, 575
PleI GAGTC 4 cut(s) 250, 253, 424, 525
PpsI GAGTC 4 cut(s) 250, 253, 424, 525
PshBI ATTAAT 1 cut(s) 564
Psp124BI GAGCTC 2 cut(s) 52, 171
PspEI GGTNACC 1 cut(s) 449
PspLI CGTACG 1 cut(s) 159
PspPI GGNCC 1 cut(s) 143
PsuI RGATCY 1 cut(s) 116
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SacI GAGCTC 2 cut(s) 52, 171
SaqAI TTAA 2 cut(s) 264, 564
SatI GCNGC 3 cut(s) 33, 552, 574
Sau3AI GATC 2 cut(s) 116, 220
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 4 cut(s) 250, 254, 424, 526
ScrFI CCNGG 2 cut(s) 114, 310
SduI GDGCHC 3 cut(s) 52, 171, 309
SetI ASST 8 cut(s) 52, 127, 171, 186, 276, 288, 512, 595
SfaNI GCATC 2 cut(s) 28, 487
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
Sse9I AATT 3 cut(s) 328, 472, 565
SsiI CCGC 8 cut(s) 5, 33, 164, 377, 434, 459, 573, 576
SspMI CTAG 1 cut(s) 555
SstI GAGCTC 2 cut(s) 52, 171
StyD4I CCNGG 2 cut(s) 112, 308
TaaI ACNGT 2 cut(s) 292, 404
TaqI TCGA 4 cut(s) 75, 443, 470, 476
TasI AATT 3 cut(s) 328, 472, 565
TauI GCSGC 2 cut(s) 35, 576
TfiI GAWTC 2 cut(s) 56, 176
Tru1I TTAA 2 cut(s) 264, 564
Tru9I TTAA 2 cut(s) 264, 564
TseI GCWGC 1 cut(s) 551
VspI ATTAAT 1 cut(s) 564
XapI RAATTY 1 cut(s) 472
XcmI CCANNNNNNNNNTGG 1 cut(s) 625
XspI CTAG 1 cut(s) 555
Zsp2I ATGCAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.