Rroxscaffold_2G00099000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012028
Physical Location & Seq
Forward (+)
20490869 .. 20491558
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00099000.1

Sequence Viewer

Length: 690 bp
ATGGCGGAGACTATTATGCATCAGCAAAGCGCCGCCGTAGGGGGTAGAGCTCTTGATTCTCTCCTCCACGCCCTCGACCCCATATCTCTCCTTCTCTCCCAGAACCCAGTTCCGGGATCTCAACCTGACTACATGGAACGAGGGCCAAGATACAACGCCTATGCGCAGCTCAGAGAATCCAAGCTAAGAAGGAAGTATGAGCAAATGAGCCAAGATGATGATCAGCAACTTGAACAAGAGCAAGAGTCAAAACCGACTCCTGTTAAGAAGCAGGTCAAGTTTCAGGTTACTGTTCCGAGTAATGTGCCCCGGAAAAAGGGTGCTGGTTATTCCTCTTCTTCTTCTGTTGTTGCTCAATCTGTGCCCGATTTCTCGGCGGTGCTGAGGAAGGAGAAAGAGAACCGTAGGCCGGTGACGAGGCTTGAGATGACTCCGCCGTGGTCGAAGGGTAACCACGGCGGGGTTTTGTCGAATTCGAGAGGGAGTAAGTCGGCGAGTGCGGGGGAGAAGAACAGGGGCAATAATGGAGGAGGGTTGATGGCAAGAAAGAGCTATGCGAGTCTTGAAGAACTGAAGGGTTTGTCTTCCATTGCTGCTAGTGCTATTAATTGCGGCGGCGGTGAAAACAGGGCAGGTGGGAGGATCGGTAGAACAACGGCCAGGAATGTTTTGGGTTACAGACACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

24.87

Weight (kDa)

9.99

Isoelectric Point (pI)

51.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012028)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67035 AT1G67035 AT5G38300
fragaria_vesca FvH4_6g36230
malus_domestica MD09G1253700.v1.1 MD17G1245500.v1.1
prunus_persica Prupe.3G143600_v2.0.a1
pyrus_communis pycom09g16960 pycom17g24800
rosa_chinensis RchiOBHm_Chr2g0148201
rosa_laevigata RLG00000020326
rosa_multiflora Rmu_sc0001516.1_g000105
rosa_roxburghii Rroxscaffold_2G00099000
rosa_rugosa Rorug02G0404400
rosa_samantha Rh2AG463000 Rh2BG476200 Rh2CG449800 Rh2DG484900
rosa_wichuraiana Rw2G037750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 623
Acc16I TGCGCA 1 cut(s) 165
Acc36I ACCTGC 2 cut(s) 262, 623
AciI CCGC 9 cut(s) 5, 33, 377, 434, 459, 500, 612, 615, 618
AclWI GGATC 2 cut(s) 124, 650
AcoI YGGCCR 1 cut(s) 657
AcsI RAATTY 1 cut(s) 472
AcuI CTGAAG 1 cut(s) 593
AfiI CCNNNNNNNGG 6 cut(s) 39, 112, 113, 316, 409, 460
AgsI TTSAA 2 cut(s) 233, 566
AjnI CCWGG 1 cut(s) 659
AluBI AGCT 4 cut(s) 50, 169, 184, 552
AluI AGCT 4 cut(s) 50, 169, 184, 552
Alw21I GWGCWC 1 cut(s) 52
Alw26I GTCTC 1 cut(s) 2
AlwI GGATC 2 cut(s) 124, 650
AoxI GGCC 3 cut(s) 143, 407, 657
ApeKI GCWGC 2 cut(s) 166, 593
ApoI RAATTY 1 cut(s) 472
AseI ATTAAT 1 cut(s) 606
AspLEI GCGC 2 cut(s) 32, 166
AspS9I GGNCC 1 cut(s) 143
AsuC2I CCSGG 2 cut(s) 114, 310
AsuHPI GGTGA 2 cut(s) 424, 632
BaeGI GKGCMC 2 cut(s) 309, 366
BanII GRGCYC 1 cut(s) 52
BbsI GAAGAC 1 cut(s) 576
Bbv12I GWGCWC 1 cut(s) 52
BbvCI CCTCAGC 1 cut(s) 383
BbvI GCAGC 2 cut(s) 178, 580
BccI CCATC 1 cut(s) 532
BceAI ACGGC 4 cut(s) 20, 421, 472, 672
BcgI CGANNNNNNTGC 2 cut(s) 286, 320
BciT130I CCWGG 1 cut(s) 661
BclI TGATCA 1 cut(s) 220
BcnI CCSGG 2 cut(s) 114, 310
BcoDI GTCTC 1 cut(s) 2
BfaI CTAG 1 cut(s) 597
BfoI RGCGCY 1 cut(s) 33
BfuAI ACCTGC 2 cut(s) 262, 623
BisI GCNGC 5 cut(s) 33, 167, 594, 613, 616
BlsI GCNGC 5 cut(s) 34, 168, 595, 614, 617
Bme1390I CCNGG 3 cut(s) 114, 310, 661
BmgT120I GGNCC 1 cut(s) 143
BmrFI CCNGG 3 cut(s) 114, 310, 661
BmrI ACTGGG 1 cut(s) 101
BmsI GCATC 1 cut(s) 28
BmuI ACTGGG 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 576
Bpu10I CCTNAGC 1 cut(s) 383
BpuEI CTTGAG 1 cut(s) 443
BpuMI CCSGG 2 cut(s) 114, 310
BsaBI GATNNNNATC 1 cut(s) 219
BsaJI CCNNGG 3 cut(s) 308, 437, 454
BsaXI ACNNNNNCTCC 2 cut(s) 631, 661
Bsc4I CCNNNNNNNGG 6 cut(s) 39, 112, 113, 316, 409, 460
Bse118I RCCGGY 1 cut(s) 409
Bse1I ACTGG 1 cut(s) 107
Bse3DI GCAATG 1 cut(s) 588
Bse8I GATNNNNATC 1 cut(s) 219
BseBI CCWGG 1 cut(s) 661
BseDI CCNNGG 3 cut(s) 308, 437, 454
BseJI GATNNNNATC 1 cut(s) 219
BseLI CCNNNNNNNGG 6 cut(s) 39, 112, 113, 316, 409, 460
BseMI GCAATG 1 cut(s) 588
BseMII CTCAG 2 cut(s) 184, 374
BseNI ACTGG 1 cut(s) 107
BseRI GAGGAG 2 cut(s) 53, 543
BseSI GKGCMC 2 cut(s) 309, 366
BseXI GCAGC 2 cut(s) 178, 580
BshFI GGCC 3 cut(s) 145, 409, 659
BsiHKAI GWGCWC 1 cut(s) 52
BsiSI CCGG 3 cut(s) 113, 310, 410
BslI CCNNNNNNNGG 6 cut(s) 39, 112, 113, 316, 409, 460
BsmAI GTCTC 1 cut(s) 2
BsnI GGCC 3 cut(s) 145, 409, 659
Bsp1286I GDGCHC 3 cut(s) 52, 309, 366
Bsp143I GATC 3 cut(s) 116, 220, 642
BspACI CCGC 9 cut(s) 5, 33, 377, 434, 459, 500, 612, 615, 618
BspANI GGCC 3 cut(s) 145, 409, 659
BspCNI CTCAG 2 cut(s) 183, 375
BspMI ACCTGC 2 cut(s) 262, 623
BspPI GGATC 2 cut(s) 124, 650
BsrDI GCAATG 1 cut(s) 588
BsrFI RCCGGY 1 cut(s) 409
BsrI ACTGG 1 cut(s) 107
BssAI RCCGGY 1 cut(s) 409
BssECI CCNNGG 3 cut(s) 308, 437, 454
BssMI GATC 3 cut(s) 116, 220, 642
Bst2UI CCWGG 1 cut(s) 661
Bst4CI ACNGT 2 cut(s) 292, 404
Bst6I CTCTTC 1 cut(s) 340
BstDEI CTNAG 3 cut(s) 170, 185, 383
BstDSI CCRYGG 2 cut(s) 437, 454
BstEII GGTNACC 1 cut(s) 449
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 2 cut(s) 32, 166
BstKTI GATC 3 cut(s) 119, 223, 645
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 3 cut(s) 116, 220, 642
BstMWI GCNNNNNNNGC 1 cut(s) 599
BstNI CCWGG 1 cut(s) 661
BstPI GGTNACC 1 cut(s) 449
BstSCI CCNGG 3 cut(s) 112, 308, 659
BstSLI GKGCMC 2 cut(s) 309, 366
BstV1I GCAGC 2 cut(s) 178, 580
BstV2I GAAGAC 1 cut(s) 576
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BsuRI GGCC 3 cut(s) 145, 409, 659
BtgI CCRYGG 2 cut(s) 437, 454
BveI ACCTGC 2 cut(s) 262, 623
CfoI GCGC 2 cut(s) 32, 166
Cfr10I RCCGGY 1 cut(s) 409
Cfr13I GGNCC 1 cut(s) 143
CviAII CATG 1 cut(s) 133
CviJI RGCY 9 cut(s) 50, 145, 169, 184, 210, 409, 421, 552, 659
CviKI_1 RGCY 9 cut(s) 50, 145, 169, 184, 210, 409, 421, 552, 659
DdeI CTNAG 3 cut(s) 170, 185, 383
DpnI GATC 3 cut(s) 118, 222, 644
DpnII GATC 3 cut(s) 116, 220, 642
EaeI YGGCCR 1 cut(s) 657
Eam1104I CTCTTC 1 cut(s) 340
EarI CTCTTC 1 cut(s) 340
EciI GGCGGA 2 cut(s) 20, 423
Ecl136II GAGCTC 1 cut(s) 50
Eco24I GRGCYC 1 cut(s) 52
Eco53kI GAGCTC 1 cut(s) 50
Eco57I CTGAAG 1 cut(s) 593
Eco91I GGTNACC 1 cut(s) 449
EcoICRI GAGCTC 1 cut(s) 50
EcoO65I GGTNACC 1 cut(s) 449
EcoRI GAATTC 1 cut(s) 472
EcoRII CCWGG 1 cut(s) 659
EcoT22I ATGCAT 1 cut(s) 21
EcoT38I GRGCYC 1 cut(s) 52
FaeI CATG 1 cut(s) 136
FaiI YATR 6 cut(s) 17, 83, 134, 162, 198, 555
FatI CATG 1 cut(s) 132
FauI CCCGC 2 cut(s) 452, 493
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 5 cut(s) 33, 167, 594, 613, 616
FriOI GRGCYC 1 cut(s) 52
Fsp4HI GCNGC 5 cut(s) 33, 167, 594, 613, 616
FspBI CTAG 1 cut(s) 597
FspI TGCGCA 1 cut(s) 165
GlaI GCGC 2 cut(s) 31, 165
GluI GCNGC 5 cut(s) 33, 167, 594, 613, 616
HaeII RGCGCY 1 cut(s) 33
HaeIII GGCC 3 cut(s) 145, 409, 659
HapII CCGG 3 cut(s) 113, 310, 410
HhaI GCGC 2 cut(s) 32, 166
Hin1II CATG 1 cut(s) 136
Hin6I GCGC 2 cut(s) 30, 164
HinP1I GCGC 2 cut(s) 30, 164
HinfI GANTC 6 cut(s) 56, 176, 245, 256, 430, 559
HpaII CCGG 3 cut(s) 113, 310, 410
HphI GGTGA 2 cut(s) 424, 632
Hpy188I TCNGA 3 cut(s) 173, 297, 689
Hpy188III TCNNGA 3 cut(s) 53, 477, 563
HpyAV CCTTC 5 cut(s) 101, 183, 382, 439, 568
HpyCH4III ACNGT 2 cut(s) 292, 404
HpyCH4V TGCA 1 cut(s) 19
HpyF10VI GCNNNNNNNGC 1 cut(s) 599
HpyF3I CTNAG 3 cut(s) 170, 185, 383
Hsp92II CATG 1 cut(s) 136
HspAI GCGC 2 cut(s) 30, 164
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 3 cut(s) 116, 220, 642
Lsp1109I GCAGC 2 cut(s) 178, 580
LweI GCATC 1 cut(s) 28
MaeI CTAG 1 cut(s) 597
MaeIII GTNAC 4 cut(s) 286, 412, 449, 674
MalI GATC 3 cut(s) 118, 222, 644
MboI GATC 3 cut(s) 116, 220, 642
MboII GAAGA 6 cut(s) 327, 330, 333, 520, 576, 578
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 3 cut(s) 52, 309, 366
MluCI AATT 2 cut(s) 472, 607
MlyI GAGTC 4 cut(s) 250, 254, 424, 568
Mph1103I ATGCAT 1 cut(s) 21
MseI TTAA 2 cut(s) 264, 606
MspI CCGG 3 cut(s) 113, 310, 410
MspR9I CCNGG 3 cut(s) 114, 310, 661
MvaI CCWGG 1 cut(s) 661
MwoI GCNNNNNNNGC 1 cut(s) 599
NciI CCSGG 2 cut(s) 114, 310
NdeII GATC 3 cut(s) 116, 220, 642
NlaIII CATG 1 cut(s) 136
NmeAIII GCCGAG 1 cut(s) 353
NmuCI GTSAC 1 cut(s) 412
NsbI TGCGCA 1 cut(s) 165
NsiI ATGCAT 1 cut(s) 21
PaqCI CACCTGC 1 cut(s) 623
PfeI GAWTC 2 cut(s) 56, 176
PfoI TCCNGGA 1 cut(s) 112
PkrI GCNGC 5 cut(s) 34, 168, 595, 614, 617
PleI GAGTC 4 cut(s) 250, 253, 424, 567
PpsI GAGTC 4 cut(s) 250, 253, 424, 567
PshBI ATTAAT 1 cut(s) 606
Psp124BI GAGCTC 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 659
PspEI GGTNACC 1 cut(s) 449
PspGI CCWGG 1 cut(s) 659
PspPI GGNCC 1 cut(s) 143
PsuI RGATCY 1 cut(s) 116
SacI GAGCTC 1 cut(s) 52
SaqAI TTAA 2 cut(s) 264, 606
SatI GCNGC 5 cut(s) 33, 167, 594, 613, 616
Sau3AI GATC 3 cut(s) 116, 220, 642
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 4 cut(s) 250, 254, 424, 568
ScrFI CCNGG 3 cut(s) 114, 310, 661
SduI GDGCHC 3 cut(s) 52, 309, 366
SetI ASST 8 cut(s) 52, 127, 171, 186, 276, 288, 554, 637
SfaNI GCATC 1 cut(s) 28
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
Sse9I AATT 2 cut(s) 472, 607
SsiI CCGC 9 cut(s) 5, 33, 377, 434, 459, 500, 612, 615, 618
SspMI CTAG 1 cut(s) 597
SstI GAGCTC 1 cut(s) 52
StyD4I CCNGG 3 cut(s) 112, 308, 659
TaaI ACNGT 2 cut(s) 292, 404
TaqI TCGA 4 cut(s) 75, 443, 470, 476
TasI AATT 2 cut(s) 472, 607
TauI GCSGC 3 cut(s) 35, 615, 618
TfiI GAWTC 2 cut(s) 56, 176
Tru1I TTAA 2 cut(s) 264, 606
Tru9I TTAA 2 cut(s) 264, 606
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 2 cut(s) 166, 593
Tsp45I GTSAC 1 cut(s) 412
VspI ATTAAT 1 cut(s) 606
XapI RAATTY 1 cut(s) 472
XcmI CCANNNNNNNNNTGG 1 cut(s) 667
XspI CTAG 1 cut(s) 597
Zsp2I ATGCAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.