FvH4_6g36230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012028
Physical Location & Seq
Reverse (-)
28475599 .. 28476279
681 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36230.t1

Sequence Viewer

Length: 681 bp
ATGGCAGATACTATGCATCGACAAAGCTCCGCTGTAGTGGGTGGCGCAGCTCTTGAGTCTCTCCTCCACGCCCTCGACCCCATATCTCTCCTCCTCTCCCACAACCCGGTTCCGCTATCCGAACCCGAATACATGGAGCGAGGACCAAGATACAATGCCTATGCTGAACTCAGAGAATCCAAGCTAAGAAGCAAGTATCAAATGAGCCCAGATGAACATCAACTGGAACAAGAGAAAGAGTCGAAACCGACTCCAGTTAAGAAACAGGTCAAGTTTCAGGTTGCTGTTCCGAGCAGTAATGTGCCGCGGAGAAAGGGTTCTGCTTATTCATCTTCATCTTGTGTTGTGGCTCAATCTGTGCCGGATTTCTCGGCGGTGCTGAGGAGGGAGAAAGAGAACCGTAAGCCGGCGAGCAGGCTTGAGATGACTCCGCCGTGGTCGAAAGGGAACCACGGCGGGGTTTTGTCGAGTTCAAAAGGGAGTAAGTCGGCGAGTGCTGTGGAGAAGAACAGGTTGATGTCGAGAAAGAGCTATGCAAGTCTTGAAGAGCTTAAGGGCTTGTCTTCCATTGCTGCTAGTGCTATTAATAGTGGTGGTGGTGGTGGTGGTGGTGAAAACCGGGCAGGTAGGAGGATTGTTAGAGCAACGGCCAAGAATGTTTTGGGTTACAGACACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

24.5

Weight (kDa)

9.99

Isoelectric Point (pI)

60.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012028)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67035 AT1G67035 AT5G38300
fragaria_vesca FvH4_6g36230
malus_domestica MD09G1253700.v1.1 MD17G1245500.v1.1
prunus_persica Prupe.3G143600_v2.0.a1
pyrus_communis pycom09g16960 pycom17g24800
rosa_chinensis RchiOBHm_Chr2g0148201
rosa_laevigata RLG00000020326
rosa_multiflora Rmu_sc0001516.1_g000105
rosa_roxburghii Rroxscaffold_2G00099000
rosa_rugosa Rorug02G0404400
rosa_samantha Rh2AG463000 Rh2BG476200 Rh2CG449800 Rh2DG484900
rosa_wichuraiana Rw2G037750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 614
AccII CGCG 1 cut(s) 307
AciI CCGC 7 cut(s) 30, 113, 305, 307, 374, 431, 456
AcoI YGGCCR 1 cut(s) 648
AfiI CCNNNNNNNGG 3 cut(s) 106, 406, 457
AflII CTTAAG 1 cut(s) 551
AgsI TTSAA 2 cut(s) 474, 545
AloI GAACNNNNNNTCC 2 cut(s) 301, 333
AluBI AGCT 5 cut(s) 27, 50, 184, 531, 550
AluI AGCT 5 cut(s) 27, 50, 184, 531, 550
Alw26I GTCTC 1 cut(s) 63
AoxI GGCC 1 cut(s) 648
ApeKI GCWGC 2 cut(s) 47, 572
AseI ATTAAT 1 cut(s) 585
Asp700I GAANNNNTTC 1 cut(s) 316
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 1 cut(s) 143
AsuC2I CCSGG 2 cut(s) 107, 620
AsuHPI GGTGA 1 cut(s) 623
AvaII GGWCC 1 cut(s) 143
BanII GRGCYC 1 cut(s) 209
BbsI GAAGAC 1 cut(s) 555
BbvCI CCTCAGC 1 cut(s) 380
BbvI GCAGC 2 cut(s) 59, 559
BceAI ACGGC 3 cut(s) 418, 469, 663
BcnI CCSGG 2 cut(s) 107, 620
BcoDI GTCTC 1 cut(s) 63
BfaI CTAG 1 cut(s) 576
BfmI CTRYAG 1 cut(s) 33
BfrI CTTAAG 1 cut(s) 551
BfuAI ACCTGC 1 cut(s) 614
BisI GCNGC 3 cut(s) 48, 305, 573
BlsI GCNGC 3 cut(s) 49, 306, 574
Bme1390I CCNGG 2 cut(s) 107, 620
Bme18I GGWCC 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 2 cut(s) 111, 449
BmrFI CCNGG 2 cut(s) 107, 620
BmsI GCATC 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 555
BpmI CTGGAG 1 cut(s) 237
Bpu10I CCTNAGC 1 cut(s) 380
BpuEI CTTGAG 2 cut(s) 74, 440
BpuMI CCSGG 2 cut(s) 107, 620
BsaBI GATNNNNATC 1 cut(s) 216
BsaJI CCNNGG 3 cut(s) 305, 434, 451
BsaXI ACNNNNNCTCC 2 cut(s) 301, 331
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 406, 457
Bse118I RCCGGY 1 cut(s) 406
Bse1I ACTGG 2 cut(s) 228, 254
Bse3DI GCAATG 1 cut(s) 567
Bse8I GATNNNNATC 1 cut(s) 216
BseDI CCNNGG 3 cut(s) 305, 434, 451
BseJI GATNNNNATC 1 cut(s) 216
BseLI CCNNNNNNNGG 3 cut(s) 106, 406, 457
BseMI GCAATG 1 cut(s) 567
BseMII CTCAG 2 cut(s) 184, 371
BseNI ACTGG 2 cut(s) 228, 254
BseRI GAGGAG 4 cut(s) 53, 80, 83, 397
BseXI GCAGC 2 cut(s) 59, 559
Bsh1236I CGCG 1 cut(s) 307
BshFI GGCC 1 cut(s) 650
BsiSI CCGG 4 cut(s) 107, 362, 407, 619
BslI CCNNNNNNNGG 3 cut(s) 106, 406, 457
BsmAI GTCTC 1 cut(s) 63
BsnI GGCC 1 cut(s) 650
Bsp1286I GDGCHC 1 cut(s) 209
BspACI CCGC 7 cut(s) 30, 113, 305, 307, 374, 431, 456
BspANI GGCC 1 cut(s) 650
BspCNI CTCAG 2 cut(s) 183, 372
BspFNI CGCG 1 cut(s) 307
BspLI GGNNCC 2 cut(s) 111, 449
BspMI ACCTGC 1 cut(s) 614
BspQI GCTCTTC 1 cut(s) 540
BspTI CTTAAG 1 cut(s) 551
BsrDI GCAATG 1 cut(s) 567
BsrFI RCCGGY 1 cut(s) 406
BsrI ACTGG 2 cut(s) 228, 254
BssAI RCCGGY 1 cut(s) 406
BssECI CCNNGG 3 cut(s) 305, 434, 451
Bst4CI ACNGT 1 cut(s) 401
Bst6I CTCTTC 1 cut(s) 540
BstAFI CTTAAG 1 cut(s) 551
BstC8I GCNNGC 3 cut(s) 408, 412, 416
BstDEI CTNAG 3 cut(s) 170, 185, 380
BstDSI CCRYGG 3 cut(s) 305, 434, 451
BstFNI CGCG 1 cut(s) 307
BstHHI GCGC 1 cut(s) 47
BstMAI GTCTC 1 cut(s) 63
BstMWI GCNNNNNNNGC 1 cut(s) 578
BstSCI CCNGG 2 cut(s) 105, 618
BstSFI CTRYAG 1 cut(s) 33
BstUI CGCG 1 cut(s) 307
BstV1I GCAGC 2 cut(s) 59, 559
BstV2I GAAGAC 1 cut(s) 555
BsuRI GGCC 1 cut(s) 650
BtgI CCRYGG 3 cut(s) 305, 434, 451
BveI ACCTGC 1 cut(s) 614
Cac8I GCNNGC 3 cut(s) 408, 412, 416
CfoI GCGC 1 cut(s) 47
Cfr10I RCCGGY 1 cut(s) 406
Cfr13I GGNCC 1 cut(s) 143
Cfr42I CCGCGG 1 cut(s) 308
CviAII CATG 1 cut(s) 133
DdeI CTNAG 3 cut(s) 170, 185, 380
EaeI YGGCCR 1 cut(s) 648
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
EciI GGCGGA 1 cut(s) 420
Eco24I GRGCYC 1 cut(s) 209
Eco47I GGWCC 1 cut(s) 143
EcoT22I ATGCAT 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 209
FaeI CATG 1 cut(s) 136
FaiI YATR 5 cut(s) 14, 83, 134, 162, 534
FatI CATG 1 cut(s) 132
FauI CCCGC 1 cut(s) 449
Fnu4HI GCNGC 3 cut(s) 48, 305, 573
FriOI GRGCYC 1 cut(s) 209
Fsp4HI GCNGC 3 cut(s) 48, 305, 573
FspBI CTAG 1 cut(s) 576
GlaI GCGC 1 cut(s) 46
GluI GCNGC 3 cut(s) 48, 305, 573
GsuI CTGGAG 1 cut(s) 237
HaeIII GGCC 1 cut(s) 650
HapII CCGG 4 cut(s) 107, 362, 407, 619
HhaI GCGC 1 cut(s) 47
Hin1II CATG 1 cut(s) 136
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HinfI GANTC 5 cut(s) 56, 176, 239, 250, 427
HpaII CCGG 4 cut(s) 107, 362, 407, 619
HphI GGTGA 1 cut(s) 623
Hpy188I TCNGA 3 cut(s) 121, 173, 291
Hpy188III TCNNGA 3 cut(s) 53, 522, 542
HpyCH4III ACNGT 1 cut(s) 401
HpyCH4V TGCA 2 cut(s) 16, 536
HpyF10VI GCNNNNNNNGC 1 cut(s) 578
HpyF3I CTNAG 3 cut(s) 170, 185, 380
Hsp92II CATG 1 cut(s) 136
HspAI GCGC 1 cut(s) 45
KroI GCCGGC 1 cut(s) 406
KroNI GCCGGC 1 cut(s) 408
KspI CCGCGG 1 cut(s) 308
LguI GCTCTTC 1 cut(s) 540
LmnI GCTCC 2 cut(s) 32, 136
Lsp1109I GCAGC 2 cut(s) 59, 559
LweI GCATC 1 cut(s) 25
MaeI CTAG 1 cut(s) 576
MaeIII GTNAC 1 cut(s) 665
MboII GAAGA 4 cut(s) 324, 517, 555, 557
MhlI GDGCHC 1 cut(s) 209
MlyI GAGTC 4 cut(s) 65, 244, 248, 421
MnlI CCTC 8 cut(s) 74, 83, 101, 104, 134, 375, 378, 624
Mph1103I ATGCAT 1 cut(s) 18
MroNI GCCGGC 1 cut(s) 406
MroXI GAANNNNTTC 1 cut(s) 316
MseI TTAA 3 cut(s) 258, 552, 585
MspA1I CMGCKG 2 cut(s) 32, 307
MspCI CTTAAG 1 cut(s) 551
MspI CCGG 4 cut(s) 107, 362, 407, 619
MspR9I CCNGG 2 cut(s) 107, 620
MvnI CGCG 1 cut(s) 307
MwoI GCNNNNNNNGC 1 cut(s) 578
NaeI GCCGGC 1 cut(s) 408
NciI CCSGG 2 cut(s) 107, 620
NgoMIV GCCGGC 1 cut(s) 406
NlaIII CATG 1 cut(s) 136
NlaIV GGNNCC 2 cut(s) 111, 449
NmeAIII GCCGAG 1 cut(s) 350
NsiI ATGCAT 1 cut(s) 18
PciSI GCTCTTC 1 cut(s) 540
PdiI GCCGGC 1 cut(s) 408
PdmI GAANNNNTTC 1 cut(s) 316
PfeI GAWTC 1 cut(s) 176
PkrI GCNGC 3 cut(s) 49, 306, 574
PleI GAGTC 4 cut(s) 64, 244, 247, 421
PpsI GAGTC 4 cut(s) 64, 244, 247, 421
PshBI ATTAAT 1 cut(s) 585
PspN4I GGNNCC 2 cut(s) 111, 449
PspPI GGNCC 1 cut(s) 143
SacII CCGCGG 1 cut(s) 308
SapI GCTCTTC 1 cut(s) 540
SaqAI TTAA 3 cut(s) 258, 552, 585
SatI GCNGC 3 cut(s) 48, 305, 573
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 4 cut(s) 65, 244, 248, 421
ScrFI CCNGG 2 cut(s) 107, 620
SduI GDGCHC 1 cut(s) 209
SetI ASST 9 cut(s) 29, 52, 186, 270, 282, 515, 533, 552, 628
SfaNI GCATC 1 cut(s) 25
SfcI CTRYAG 1 cut(s) 33
Sfr303I CCGCGG 1 cut(s) 308
SgrBI CCGCGG 1 cut(s) 308
SinI GGWCC 1 cut(s) 143
SmlI CTYRAG 3 cut(s) 53, 419, 551
SmoI CTYRAG 3 cut(s) 53, 419, 551
SsiI CCGC 7 cut(s) 30, 113, 305, 307, 374, 431, 456
SspMI CTAG 1 cut(s) 576
StyD4I CCNGG 2 cut(s) 105, 618
TaaI ACNGT 1 cut(s) 401
TaqI TCGA 6 cut(s) 19, 75, 242, 440, 467, 521
TauI GCSGC 1 cut(s) 307
TfiI GAWTC 1 cut(s) 176
Tru1I TTAA 3 cut(s) 258, 552, 585
Tru9I TTAA 3 cut(s) 258, 552, 585
TseI GCWGC 2 cut(s) 47, 572
TspDTI ATGAA 3 cut(s) 228, 318, 324
Vha464I CTTAAG 1 cut(s) 551
VpaK11BI GGWCC 1 cut(s) 143
VspI ATTAAT 1 cut(s) 585
XcmI CCANNNNNNNNNTGG 1 cut(s) 658
XmnI GAANNNNTTC 1 cut(s) 316
XspI CTAG 1 cut(s) 576
Zsp2I ATGCAT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.