MD17G1245500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0012028
Physical Location & Seq
Reverse (-)
29389698 .. 29390378
681 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1245500.v1.1.491

Sequence Viewer

Length: 681 bp
ATGGCCGAGACTAACAGCTCTCTGCAACAAACCAATCAACAAAACCCAGCTTTTCAATCTCTCTTCCAAGCCATCGACCCCATCTCTCTCATTCTTTCCCAGAACCCTACCCCAGATCAACATCCAGCCCCCCTGAGGTTCGCCACCGAGAGCTACCCCATGGAGAGAGGACCCAGATACACAGCCTACGCGGAGCTCAGAGAATCGCGGCTAAAGAGGAAGTACATGAGCCCAGAGGAGCTCGAAGAACCCGAATCGAAATCGACCCCATCGAAGAAACAAGTCAAGTTTCAGACCCATCTGACCAATTCGCGAAAGGGGTCTTCCGTTCTCGCTCAGTCGGTGCCCGACTTCTCAGCCGTGTTGCGAAAAGAGAACCGCAAGCCGCCGTCGAGGCTTCCGTCGATGCAGGAGATGACCCCACCGGCGAAGAGTTCGGCGAAAGCGGCGAACGGGGTTTTGTCGAATTCGAGAGGGAGTAAGTCGGCGAGCGCGGGGGAGAAGAGGTACAACAATGGCGGAGGGGTCATGGCGAGGAAGAGCTACGCGAGTATGGAGGAGTTGAAGGGGTTGTCGACCGCCGCCGCTAATGCTATTAGCGGCGAAAACAGGGGCGGAAGGAAGGCCAATGGCAATGCAAGAGCAATGCCAAAGACTGTTTTGGGATACAGACAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

24.72

Weight (kDa)

10.13

Isoelectric Point (pI)

51.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012028)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67035 AT1G67035 AT5G38300
fragaria_vesca FvH4_6g36230
malus_domestica MD09G1253700.v1.1 MD17G1245500.v1.1
prunus_persica Prupe.3G143600_v2.0.a1
pyrus_communis pycom09g16960 pycom17g24800
rosa_chinensis RchiOBHm_Chr2g0148201
rosa_laevigata RLG00000020326
rosa_multiflora Rmu_sc0001516.1_g000105
rosa_roxburghii Rroxscaffold_2G00099000
rosa_rugosa Rorug02G0404400
rosa_samantha Rh2AG463000 Rh2BG476200 Rh2CG449800 Rh2DG484900
rosa_wichuraiana Rw2G037750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 343
AccI GTMKAC 1 cut(s) 575
AccII CGCG 5 cut(s) 191, 208, 313, 494, 548
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 466
AfaI GTAC 2 cut(s) 224, 509
AfiI CCNNNNNNNGG 1 cut(s) 135
AgsI TTSAA 2 cut(s) 56, 565
AluBI AGCT 6 cut(s) 18, 50, 153, 196, 241, 543
AluI AGCT 6 cut(s) 18, 50, 153, 196, 241, 543
Alw21I GWGCWC 2 cut(s) 198, 243
Alw26I GTCTC 1 cut(s) 2
AoxI GGCC 2 cut(s) 3, 624
ApoI RAATTY 1 cut(s) 466
AspLEI GCGC 1 cut(s) 494
AspS9I GGNCC 1 cut(s) 170
AvaII GGWCC 1 cut(s) 170
AxyI CCTNAGG 1 cut(s) 134
BaeGI GKGCMC 1 cut(s) 348
BanI GGYRCC 1 cut(s) 343
BanII GRGCYC 3 cut(s) 198, 233, 243
BbsI GAAGAC 1 cut(s) 315
Bbv12I GWGCWC 2 cut(s) 198, 243
BccI CCATC 4 cut(s) 80, 89, 277, 306
BceAI ACGGC 2 cut(s) 344, 373
BciVI GTATCC 1 cut(s) 659
BcoDI GTCTC 1 cut(s) 2
BfuI GTATCC 1 cut(s) 659
BglI GCCNNNNNGGC 1 cut(s) 394
BisI GCNGC 6 cut(s) 209, 386, 447, 582, 585, 601
BlsI GCNGC 6 cut(s) 210, 387, 448, 583, 586, 602
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 2 cut(s) 172, 345
BmsI GCATC 1 cut(s) 396
BpiI GAAGAC 1 cut(s) 315
BsaBI GATNNNNATC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 159
BsaXI ACNNNNNCTCC 2 cut(s) 491, 521
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse118I RCCGGY 1 cut(s) 424
Bse21I CCTNAGG 1 cut(s) 134
Bse3DI GCAATG 2 cut(s) 640, 651
Bse8I GATNNNNATC 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 1 cut(s) 121
BseJI GATNNNNATC 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 135
BseMI GCAATG 2 cut(s) 640, 651
BseMII CTCAG 4 cut(s) 125, 211, 350, 369
BseRI GAGGAG 2 cut(s) 251, 572
BseSI GKGCMC 1 cut(s) 348
BseYI CCCAGC 1 cut(s) 46
Bsh1236I CGCG 5 cut(s) 191, 208, 313, 494, 548
Bsh1285I CGRYCG 1 cut(s) 579
BshFI GGCC 2 cut(s) 5, 626
BshNI GGYRCC 1 cut(s) 343
BsiEI CGRYCG 1 cut(s) 579
BsiHKAI GWGCWC 2 cut(s) 198, 243
BsiSI CCGG 1 cut(s) 425
BslI CCNNNNNNNGG 1 cut(s) 135
BsmAI GTCTC 1 cut(s) 2
BsnI GGCC 2 cut(s) 5, 626
Bsp1286I GDGCHC 4 cut(s) 198, 233, 243, 348
Bsp143I GATC 1 cut(s) 115
Bsp19I CCATGG 1 cut(s) 159
Bsp68I TCGCGA 1 cut(s) 313
BspANI GGCC 2 cut(s) 5, 626
BspCNI CTCAG 4 cut(s) 126, 210, 349, 368
BspFNI CGCG 5 cut(s) 191, 208, 313, 494, 548
BspLI GGNNCC 2 cut(s) 172, 345
BspQI GCTCTTC 1 cut(s) 533
BspT107I GGYRCC 1 cut(s) 343
BsrDI GCAATG 2 cut(s) 640, 651
BsrFI RCCGGY 1 cut(s) 424
BssAI RCCGGY 1 cut(s) 424
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 1 cut(s) 115
BssT1I CCWWGG 1 cut(s) 159
Bst4CI ACNGT 2 cut(s) 658, 675
Bst6I CTCTTC 4 cut(s) 68, 425, 497, 533
BstC8I GCNNGC 2 cut(s) 383, 490
BstDEI CTNAG 4 cut(s) 134, 197, 336, 355
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 121
BstFNI CGCG 5 cut(s) 191, 208, 313, 494, 548
BstHHI GCGC 1 cut(s) 494
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 1 cut(s) 115
BstMCI CGRYCG 1 cut(s) 579
BstMWI GCNNNNNNNGC 3 cut(s) 394, 446, 590
BstSLI GKGCMC 1 cut(s) 348
BstUI CGCG 5 cut(s) 191, 208, 313, 494, 548
BstV2I GAAGAC 1 cut(s) 315
Bsu36I CCTNAGG 1 cut(s) 134
BsuI GTATCC 1 cut(s) 659
BsuRI GGCC 2 cut(s) 5, 626
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 1 cut(s) 121
BtuMI TCGCGA 1 cut(s) 313
Cac8I GCNNGC 2 cut(s) 383, 490
CfoI GCGC 1 cut(s) 494
Cfr10I RCCGGY 1 cut(s) 424
Cfr13I GGNCC 1 cut(s) 170
Csp6I GTAC 2 cut(s) 223, 508
CviAII CATG 3 cut(s) 160, 226, 529
CviQI GTAC 2 cut(s) 223, 508
DdeI CTNAG 4 cut(s) 134, 197, 336, 355
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 68, 425, 497, 533
EarI CTCTTC 4 cut(s) 68, 425, 497, 533
EciI GGCGGA 2 cut(s) 534, 630
Ecl136II GAGCTC 2 cut(s) 196, 241
Eco130I CCWWGG 1 cut(s) 159
Eco24I GRGCYC 3 cut(s) 198, 233, 243
Eco47I GGWCC 1 cut(s) 170
Eco53kI GAGCTC 2 cut(s) 196, 241
Eco81I CCTNAGG 1 cut(s) 134
EcoICRI GAGCTC 2 cut(s) 196, 241
EcoO109I RGGNCCY 1 cut(s) 170
EcoRI GAATTC 1 cut(s) 466
EcoT14I CCWWGG 1 cut(s) 159
EcoT38I GRGCYC 3 cut(s) 198, 233, 243
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 3 cut(s) 163, 229, 532
FaiI YATR 4 cut(s) 161, 227, 530, 554
FatI CATG 3 cut(s) 159, 225, 528
FauI CCCGC 1 cut(s) 487
FblI GTMKAC 1 cut(s) 575
Fnu4HI GCNGC 6 cut(s) 209, 386, 447, 582, 585, 601
FokI GGATG 1 cut(s) 108
FriOI GRGCYC 3 cut(s) 198, 233, 243
Fsp4HI GCNGC 6 cut(s) 209, 386, 447, 582, 585, 601
GlaI GCGC 1 cut(s) 493
GluI GCNGC 6 cut(s) 209, 386, 447, 582, 585, 601
GsaI CCCAGC 1 cut(s) 50
HaeIII GGCC 2 cut(s) 5, 626
HapII CCGG 1 cut(s) 425
HhaI GCGC 1 cut(s) 494
Hin1II CATG 3 cut(s) 163, 229, 532
Hin6I GCGC 1 cut(s) 492
HinP1I GCGC 1 cut(s) 492
HincII GTYRAC 1 cut(s) 576
HindII GTYRAC 1 cut(s) 576
HinfI GANTC 2 cut(s) 203, 254
HpaII CCGG 1 cut(s) 425
Hpy166II GTNNAC 1 cut(s) 576
Hpy188I TCNGA 4 cut(s) 200, 294, 303, 680
Hpy188III TCNNGA 2 cut(s) 312, 471
Hpy8I GTNNAC 1 cut(s) 576
Hpy99I CGWCG 2 cut(s) 394, 406
HpyAV CCTTC 3 cut(s) 559, 612, 616
HpyCH4III ACNGT 2 cut(s) 658, 675
HpyCH4V TGCA 3 cut(s) 25, 409, 638
HpyF10VI GCNNNNNNNGC 3 cut(s) 394, 446, 590
HpyF3I CTNAG 4 cut(s) 134, 197, 336, 355
Hsp92II CATG 3 cut(s) 163, 229, 532
HspAI GCGC 1 cut(s) 492
Kzo9I GATC 1 cut(s) 115
LguI GCTCTTC 1 cut(s) 533
LmnI GCTCC 2 cut(s) 193, 238
LweI GCATC 1 cut(s) 396
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 7 cut(s) 55, 257, 286, 315, 442, 514, 550
MhlI GDGCHC 4 cut(s) 198, 233, 243, 348
MluCI AATT 2 cut(s) 307, 466
MspI CCGG 1 cut(s) 425
MvnI CGCG 5 cut(s) 191, 208, 313, 494, 548
MwoI GCNNNNNNNGC 3 cut(s) 394, 446, 590
NcoI CCATGG 1 cut(s) 159
NdeII GATC 1 cut(s) 115
NlaIII CATG 3 cut(s) 163, 229, 532
NlaIV GGNNCC 2 cut(s) 172, 345
NmeAIII GCCGAG 1 cut(s) 31
NruI TCGCGA 1 cut(s) 313
PciSI GCTCTTC 1 cut(s) 533
PcsI WCGNNNNNNNCGW 3 cut(s) 249, 269, 398
PfeI GAWTC 2 cut(s) 203, 254
PkrI GCNGC 6 cut(s) 210, 387, 448, 583, 586, 602
PpuMI RGGWCCY 1 cut(s) 170
Psp124BI GAGCTC 2 cut(s) 198, 243
Psp5II RGGWCCY 1 cut(s) 170
PspFI CCCAGC 1 cut(s) 46
PspN4I GGNNCC 2 cut(s) 172, 345
PspPI GGNCC 1 cut(s) 170
PspPPI RGGWCCY 1 cut(s) 170
RruI TCGCGA 1 cut(s) 313
RsaI GTAC 2 cut(s) 224, 509
RsaNI GTAC 2 cut(s) 223, 508
SacI GAGCTC 2 cut(s) 198, 243
SalI GTCGAC 1 cut(s) 574
SapI GCTCTTC 1 cut(s) 533
SatI GCNGC 6 cut(s) 209, 386, 447, 582, 585, 601
Sau3AI GATC 1 cut(s) 115
Sau96I GGNCC 1 cut(s) 170
SduI GDGCHC 4 cut(s) 198, 233, 243, 348
SetI ASST 8 cut(s) 20, 52, 140, 155, 198, 243, 509, 545
SfaNI GCATC 1 cut(s) 396
SgrAI CRCCGGYG 1 cut(s) 424
SinI GGWCC 1 cut(s) 170
Sse9I AATT 2 cut(s) 307, 466
SstI GAGCTC 2 cut(s) 198, 243
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 2 cut(s) 658, 675
TasI AATT 2 cut(s) 307, 466
TatI WGTACW 1 cut(s) 222
TauI GCSGC 6 cut(s) 211, 388, 449, 584, 587, 603
TfiI GAWTC 2 cut(s) 203, 254
TspGWI ACGGA 2 cut(s) 316, 390
VpaK11BI GGWCC 1 cut(s) 170
XapI RAATTY 1 cut(s) 466
XmiI GTMKAC 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.