AT5G39380

Plant calmodulin-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005380
Physical Location & Seq
Reverse (-)
15758717 .. 15761747
3031 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G39380.3

Sequence Viewer

Length: 1524 bp
ATGGATGAAGACATTGCGAAACCATTTGTAACGCCTGAGAATATGATGAATAAGGAAGATGGTTTGAATCCGGGAGGTGATTCTACAGGGAAGGCAATGACTTCAAAGCCTAAAGAGAAAAAGATTCCTCATTATCTCAGAGCATCAACTGGTTCGTGTCATGATTTGTGTAAGTATGGGAAGAGACAGATACCTGTGGAGAAACCATGGCGTTCGAGTACTAAAAAGATCTTCAAGAAATCTCTTGATGATAATTTGAATGAGACTTTGAAGCCGGGTTCTTCTAAAATGAAGAAGAAGGTGAGGGAAGTCGAGAAAAACGAGGGTACTGATGATTCTTTTGAGGTGATTAAAAGAGAGGTTGTGAAGTATCAAGCGAGTGGTGTCTCTAGTGGGATGAGGAAGCCAGAGGTATTGATAATATCATCTTGTGATGAAACTCCTGTGAAGCAGATAAAGAAGAAGACAACATTAAGTTCCAAACTTAAACCTTCACCAGATTTGGGATCTCGTTCATCAGAAAATGTTGATGCCCTGAAGCCAAAAGTCTTGAAGAAATCTTATTCAGCACTGACAACGTCGAAACCAAAAGTAAACCATGAAAAAGTTGTTGCGTCACCAGTTTTGAAACCTAAAATGGGTAAAAGAAATGATGGAAAAGACGAAGATGGAAAGGTCAAGAAGGGTACAGTTTCCTCAAGAGTAGCTTCTAAGAAGGCTCCGGTGACTCCAAGAGCGTCGCTTTCTCCAAGATTATCAGTAAGACTAGCTGGAAGTTCAAGTTTGAGAAAGAGTCAGAGCTTAAAGGCTGCATCTTCCTCTTCTCGACAAAATCAGAAACCGAGACCCGTGAATCGCACTGATGAATTTAATAAACAGTTGGATGATTATCCAGTCGAGGAGAAAACATTGCACGTTGTTGAAATGGAAACAACTAACAATGTCGTCTCTGAGAATGATCAGAATCAGCAAGGATTTGTTGAACCTTTTCTTCCTCCTCTTCCACCGACCCAATCAACTCCAAAAGATGATGAGTGTACTGTTTCAGAAACAGAGGAGTACGAATACACTTCAGGAAGCAACGAAGCTGAGAGCGAAGAAGAAGAGATTGGATTGTCCAATGGAGAGAAGAAACCAAGAGCGGCGAGAAAGGAGGGTGATTCTGCAGATGAAGCTGCACGGAAGTTACGTTTCAGAAGAGGAACAATTGTGGATCCTGATACTGTAGGTGAGAAAGCAAGGAAGCTCAAGTTTAGACGAGGAAGGGGTCTAGGGGAAGACAAAGCGCAAGATGCACAAGTTAGGAGAAGCTTTAAGAAGAGGGAAGATATCAGAGAAGAAGAAGTCAATGAGGATGGTGAAAAAGTTGTGTTGAGGCATCAAGATGTTCAGGAGAAAGATGCACAGGGACTGTTCAACAATGTCATTGAAGAAACAGCGAGTAAACTCGTCGAAGCTCGAAAAAGCAAAGTTAAGGCTTTGGTTGGTGCTTTCGAAACCGTTATTTCTCTTCAAGAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CaM_binding

Protein Analysis

507

Amino Acids

56.41

Weight (kDa)

9.34

Isoelectric Point (pI)

47.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CaM_binding PF07839 395 - 503 8.2e-32 Plant calmodulin-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1142
AciI CCGC 1 cut(s) 1142
AclWI GGATC 3 cut(s) 514, 1208, 1221
AcsI RAATTY 1 cut(s) 866
AcuI CTGAAG 2 cut(s) 557, 1056
AfaI GTAC 5 cut(s) 220, 328, 688, 1039, 1061
AfiI CCNNNNNNNGG 2 cut(s) 503, 638
AjuI GAANNNNNNNTTGG 2 cut(s) 1092, 1124
AluBI AGCT 8 cut(s) 707, 770, 801, 1088, 1175, 1246, 1311, 1457
AluI AGCT 8 cut(s) 707, 770, 801, 1088, 1175, 1246, 1311, 1457
Alw26I GTCTC 5 cut(s) 178, 257, 391, 838, 952
AlwI GGATC 3 cut(s) 514, 1208, 1221
AlwNI CAGNNNCTG 1 cut(s) 1411
ApeKI GCWGC 2 cut(s) 809, 1175
ApoI RAATTY 1 cut(s) 866
Asp700I GAANNNNTTC 1 cut(s) 987
AspLEI GCGC 1 cut(s) 1288
AsuC2I CCSGG 2 cut(s) 72, 276
AsuHPI GGTGA 9 cut(s) 89, 313, 358, 486, 609, 736, 1169, 1241, 1370
AsuII TTCGAA 1 cut(s) 1494
BamHI GGATCC 1 cut(s) 1213
BbsI GAAGAC 3 cut(s) 15, 470, 1284
BbvI GCAGC 2 cut(s) 796, 1162
BccI CCATC 4 cut(s) 53, 647, 662, 1349
BclI TGATCA 1 cut(s) 958
BcnI CCSGG 2 cut(s) 72, 276
BcoDI GTCTC 5 cut(s) 178, 257, 391, 838, 952
BfaI CTAG 3 cut(s) 390, 767, 1271
BfmI CTRYAG 3 cut(s) 84, 1164, 1224
BglII AGATCT 1 cut(s) 228
BisI GCNGC 3 cut(s) 810, 1143, 1176
BlsI GCNGC 3 cut(s) 811, 1144, 1177
BmcAI AGTACT 1 cut(s) 220
Bme1390I CCNGG 2 cut(s) 72, 276
BmiI GGNNCC 2 cut(s) 720, 1215
BmrFI CCNGG 2 cut(s) 72, 276
BmsI GCATC 6 cut(s) 152, 520, 821, 1282, 1387, 1390
BpiI GAAGAC 3 cut(s) 15, 470, 1284
Bpu14I TTCGAA 1 cut(s) 1494
BpuEI CTTGAG 2 cut(s) 682, 1232
BpuMI CCSGG 2 cut(s) 72, 276
BsaBI GATNNNNATC 2 cut(s) 888, 963
BsaI GGTCTC 1 cut(s) 838
BsaJI CCNNGG 1 cut(s) 206
BsaWI WCCGGW 1 cut(s) 721
Bsc4I CCNNNNNNNGG 2 cut(s) 503, 638
Bse1I ACTGG 3 cut(s) 154, 620, 893
Bse3DI GCAATG 3 cut(s) 12, 102, 908
Bse8I GATNNNNATC 2 cut(s) 888, 963
BseDI CCNNGG 1 cut(s) 206
BseGI GGATG 4 cut(s) 10, 402, 889, 1360
BseJI GATNNNNATC 2 cut(s) 888, 963
BseLI CCNNNNNNNGG 2 cut(s) 503, 638
BseMI GCAATG 3 cut(s) 12, 102, 908
BseMII CTCAG 4 cut(s) 27, 151, 942, 1080
BseNI ACTGG 3 cut(s) 154, 620, 893
BseRI GAGGAG 3 cut(s) 914, 987, 1070
BseXI GCAGC 2 cut(s) 796, 1162
BsgI GTGCAG 1 cut(s) 1161
BsiSI CCGG 3 cut(s) 71, 275, 722
BslFI GGGAC 1 cut(s) 1422
BslI CCNNNNNNNGG 2 cut(s) 503, 638
BsmAI GTCTC 5 cut(s) 178, 257, 391, 838, 952
BsmBI CGTCTC 1 cut(s) 952
BsmFI GGGAC 1 cut(s) 1422
Bso31I GGTCTC 1 cut(s) 838
Bsp119I TTCGAA 1 cut(s) 1494
Bsp143I GATC 4 cut(s) 228, 506, 958, 1213
Bsp19I CCATGG 1 cut(s) 206
BspACI CCGC 1 cut(s) 1142
BspCNI CTCAG 4 cut(s) 28, 150, 943, 1081
BspHI TCATGA 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 720, 1215
BspMAI CTGCAG 1 cut(s) 1168
BspPI GGATC 3 cut(s) 514, 1208, 1221
BspT104I TTCGAA 1 cut(s) 1494
BspTNI GGTCTC 1 cut(s) 838
BsrBI CCGCTC 1 cut(s) 1142
BsrDI GCAATG 3 cut(s) 12, 102, 908
BsrI ACTGG 3 cut(s) 154, 620, 893
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 4 cut(s) 228, 506, 958, 1213
BssT1I CCWWGG 1 cut(s) 206
Bst4CI ACNGT 6 cut(s) 691, 879, 1042, 1225, 1413, 1501
Bst6I CTCTTC 7 cut(s) 176, 826, 1005, 1098, 1192, 1313, 1515
BstBI TTCGAA 1 cut(s) 1494
BstDEI CTNAG 5 cut(s) 36, 137, 711, 951, 1089
BstDSI CCRYGG 1 cut(s) 206
BstF5I GGATG 4 cut(s) 10, 402, 889, 1360
BstHHI GCGC 1 cut(s) 1288
BstKTI GATC 4 cut(s) 231, 509, 961, 1216
BstMAI GTCTC 5 cut(s) 178, 257, 391, 838, 952
BstMBI GATC 4 cut(s) 228, 506, 958, 1213
BstMWI GCNNNNNNNGC 2 cut(s) 1172, 1292
BstSCI CCNGG 2 cut(s) 70, 274
BstSFI CTRYAG 3 cut(s) 84, 1164, 1224
BstV1I GCAGC 2 cut(s) 796, 1162
BstV2I GAAGAC 3 cut(s) 15, 470, 1284
BstX2I RGATCY 3 cut(s) 228, 506, 1213
BstYI RGATCY 3 cut(s) 228, 506, 1213
BtgI CCRYGG 1 cut(s) 206
BtsCI GGATG 4 cut(s) 10, 402, 889, 1360
BtsIMutI CAGTG 2 cut(s) 569, 858
CaiI CAGNNNCTG 1 cut(s) 1411
CciI TCATGA 1 cut(s) 160
CfoI GCGC 1 cut(s) 1288
CseI GACGC 2 cut(s) 603, 726
Csp6I GTAC 5 cut(s) 219, 327, 687, 1038, 1060
CviAII CATG 3 cut(s) 161, 207, 599
CviQI GTAC 5 cut(s) 219, 327, 687, 1038, 1060
DdeI CTNAG 5 cut(s) 36, 137, 711, 951, 1089
DpnI GATC 4 cut(s) 230, 508, 960, 1215
DpnII GATC 4 cut(s) 228, 506, 958, 1213
Eam1104I CTCTTC 7 cut(s) 176, 826, 1005, 1098, 1192, 1313, 1515
EarI CTCTTC 7 cut(s) 176, 826, 1005, 1098, 1192, 1313, 1515
Eco130I CCWWGG 1 cut(s) 206
Eco31I GGTCTC 1 cut(s) 838
Eco32I GATATC 1 cut(s) 1330
Eco57I CTGAAG 2 cut(s) 557, 1056
EcoRV GATATC 1 cut(s) 1330
EcoT14I CCWWGG 1 cut(s) 206
ErhI CCWWGG 1 cut(s) 206
Esp3I CGTCTC 1 cut(s) 952
FaeI CATG 3 cut(s) 164, 210, 602
FaiI YATR 5 cut(s) 44, 162, 177, 208, 600
FalI AAGNNNNNCTT 2 cut(s) 691, 723
FaqI GGGAC 1 cut(s) 1422
FatI CATG 3 cut(s) 160, 206, 598
FbaI TGATCA 1 cut(s) 958
Fnu4HI GCNGC 3 cut(s) 810, 1143, 1176
FokI GGATG 4 cut(s) 17, 409, 896, 1367
Fsp4HI GCNGC 3 cut(s) 810, 1143, 1176
FspBI CTAG 3 cut(s) 390, 767, 1271
GlaI GCGC 1 cut(s) 1287
GluI GCNGC 3 cut(s) 810, 1143, 1176
HapII CCGG 3 cut(s) 71, 275, 722
HgaI GACGC 2 cut(s) 603, 726
HhaI GCGC 1 cut(s) 1288
Hin1II CATG 3 cut(s) 164, 210, 602
Hin6I GCGC 1 cut(s) 1286
HinP1I GCGC 1 cut(s) 1286
HindIII AAGCTT 1 cut(s) 1309
HpaII CCGG 3 cut(s) 71, 275, 722
HphI GGTGA 9 cut(s) 89, 313, 358, 486, 609, 736, 1169, 1241, 1370
Hpy166II GTNNAC 3 cut(s) 595, 1038, 1445
Hpy188I TCNGA 9 cut(s) 140, 520, 798, 837, 952, 963, 1048, 1196, 1334
Hpy8I GTNNAC 3 cut(s) 595, 1038, 1445
Hpy99I CGWCG 3 cut(s) 583, 742, 1454
HpyAV CCTTC 6 cut(s) 85, 292, 501, 676, 709, 1257
HpyCH4III ACNGT 6 cut(s) 691, 879, 1042, 1225, 1413, 1501
HpyCH4IV ACGT 3 cut(s) 578, 915, 1189
HpyCH4V TGCA 6 cut(s) 812, 913, 1166, 1178, 1295, 1403
HpyF10VI GCNNNNNNNGC 2 cut(s) 1172, 1292
HpyF3I CTNAG 5 cut(s) 36, 137, 711, 951, 1089
HpySE526I ACGT 3 cut(s) 578, 915, 1189
Hsp92II CATG 3 cut(s) 164, 210, 602
HspAI GCGC 1 cut(s) 1286
Ksp22I TGATCA 1 cut(s) 958
Kzo9I GATC 4 cut(s) 228, 506, 958, 1213
LmnI GCTCC 1 cut(s) 724
Lsp1109I GCAGC 2 cut(s) 796, 1162
LweI GCATC 6 cut(s) 152, 520, 821, 1282, 1387, 1390
MaeI CTAG 3 cut(s) 390, 767, 1271
MaeII ACGT 3 cut(s) 578, 915, 1189
MaeIII GTNAC 4 cut(s) 28, 615, 724, 1185
MalI GATC 4 cut(s) 230, 508, 960, 1215
MbiI CCGCTC 1 cut(s) 1142
MboI GATC 4 cut(s) 228, 506, 958, 1213
MfeI CAATTG 1 cut(s) 1206
MflI RGATCY 3 cut(s) 228, 506, 1213
MluCI AATT 3 cut(s) 253, 866, 1206
MlyI GAGTC 2 cut(s) 721, 802
MmeI TCCRAC 1 cut(s) 861
MroXI GAANNNNTTC 1 cut(s) 987
MseI TTAA 8 cut(s) 351, 473, 486, 803, 870, 1314, 1473, 1522
MslI CAYNNNNRTG 1 cut(s) 1383
MspI CCGG 3 cut(s) 71, 275, 722
MspR9I CCNGG 2 cut(s) 72, 276
MunI CAATTG 1 cut(s) 1206
MwoI GCNNNNNNNGC 2 cut(s) 1172, 1292
NciI CCSGG 2 cut(s) 72, 276
NcoI CCATGG 1 cut(s) 206
NdeII GATC 4 cut(s) 228, 506, 958, 1213
NlaIII CATG 3 cut(s) 164, 210, 602
NlaIV GGNNCC 2 cut(s) 720, 1215
NmuCI GTSAC 2 cut(s) 615, 724
NspV TTCGAA 1 cut(s) 1494
PagI TCATGA 1 cut(s) 160
PcsI WCGNNNNNNNCGW 2 cut(s) 318, 1186
PdmI GAANNNNTTC 1 cut(s) 987
PfeI GAWTC 8 cut(s) 67, 80, 124, 335, 853, 964, 1160, 1517
PflFI GACNNNGTC 1 cut(s) 577
PfoI TCCNGGA 1 cut(s) 70
PkrI GCNGC 3 cut(s) 811, 1144, 1177
PleI GAGTC 2 cut(s) 721, 801
PpsI GAGTC 2 cut(s) 721, 801
PspN4I GGNNCC 2 cut(s) 720, 1215
PstI CTGCAG 1 cut(s) 1168
PstNI CAGNNNCTG 1 cut(s) 1411
PsuI RGATCY 3 cut(s) 228, 506, 1213
PsyI GACNNNGTC 1 cut(s) 577
RsaI GTAC 5 cut(s) 220, 328, 688, 1039, 1061
RsaNI GTAC 5 cut(s) 219, 327, 687, 1038, 1060
RseI CAYNNNNRTG 1 cut(s) 1383
SaqAI TTAA 8 cut(s) 351, 473, 486, 803, 870, 1314, 1473, 1522
SatI GCNGC 3 cut(s) 810, 1143, 1176
Sau3AI GATC 4 cut(s) 228, 506, 958, 1213
ScaI AGTACT 1 cut(s) 220
SchI GAGTC 2 cut(s) 721, 802
ScrFI CCNGG 2 cut(s) 72, 276
SfaNI GCATC 6 cut(s) 152, 520, 821, 1282, 1387, 1390
SfcI CTRYAG 3 cut(s) 84, 1164, 1224
SfuI TTCGAA 1 cut(s) 1494
SmiMI CAYNNNNRTG 1 cut(s) 1383
SmlI CTYRAG 2 cut(s) 697, 1247
SmoI CTYRAG 2 cut(s) 697, 1247
Sse9I AATT 3 cut(s) 253, 866, 1206
SsiI CCGC 1 cut(s) 1142
SspMI CTAG 3 cut(s) 390, 767, 1271
StyD4I CCNGG 2 cut(s) 70, 274
StyI CCWWGG 1 cut(s) 206
TaaI ACNGT 6 cut(s) 691, 879, 1042, 1225, 1413, 1501
TaiI ACGT 3 cut(s) 581, 918, 1192
TaqI TCGA 8 cut(s) 215, 312, 581, 826, 897, 1452, 1459, 1494
TasI AATT 3 cut(s) 253, 866, 1206
TatI WGTACW 2 cut(s) 218, 1037
TauI GCSGC 1 cut(s) 1145
TfiI GAWTC 8 cut(s) 67, 80, 124, 335, 853, 964, 1160, 1517
Tru1I TTAA 8 cut(s) 351, 473, 486, 803, 870, 1314, 1473, 1522
Tru9I TTAA 8 cut(s) 351, 473, 486, 803, 870, 1314, 1473, 1522
TscAI CASTG 2 cut(s) 576, 865
TseFI GTSAC 2 cut(s) 615, 724
TseI GCWGC 2 cut(s) 809, 1175
Tsp45I GTSAC 2 cut(s) 615, 724
TspDTI ATGAA 8 cut(s) 21, 62, 305, 450, 504, 615, 879, 1185
TspGWI ACGGA 1 cut(s) 1195
TspRI CASTG 2 cut(s) 576, 865
Tth111I GACNNNGTC 1 cut(s) 577
XapI RAATTY 1 cut(s) 866
XmnI GAANNNNTTC 1 cut(s) 987
XspI CTAG 3 cut(s) 390, 767, 1271
ZrmI AGTACT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.