Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005380

Physical Location & Seq

Genomic Coordinates Reverse (-)

24562918 .. 24567552

Gene Structure 4635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G258800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1689 bp

ATGGATGAAGTGAGTATCAATTTATCAATGACCCGTGAAACAACAAAGCCAGATGAGGGTAATTCAAGACGAAATTCTACGGGGAAAATGTTCTCATTAAACAGTGAAGAAAGGATTCCTCATTATCTCAGAGCTTCTACTGGTTCCTGTCATGATCATTGTAAATATGGGAAGAAACATGAATTGGAAGTGAAGGCAAGATGTCCCATAAAGTCCGTACCAAGAAGACTTCCAACAAAATCACCTAACAGCCAAAATTCAGTAGAGAGTGCAGTTTTTCCAGAGAGGAAGAATACAGCAGTGATCAAGCTCAAACATTCACCTGATTTGAAAACCCTTTTACCTGATACATGTAACATTACCAAGCAGCAACCGTCAAATAATTCAATTGACAGCCAAAATTCTGTTGGGAGTGAGCTTCTGGCTGATAGGAAGAAGACATCATTGACCAAGCTCAAATCGTCATCGCGTTCACAACCCCATGTCTATGCTGCGCCTAAAACCATGAAGCAGGAAGTTTCATCTTCTCCTGATATGCTGGAAGTCTCTTCAAAGAAGGGTTCAATAAAACTTAAGGACAAGAGTTTGTCTGCAAAACACGTCACTTCTTCAAAGCCAAAATCTTTTGTAGTGAAGGAATTGTCCTCTCCTGATACTTCAGGAGGTTCAAGTGCCCTAAGAAGCGGTGATTTGAAGATAGGCCAGAGGACAGGGACCTCTCTGAAGCCAAAATCTTTAGCTCTGAAGCAAATGTCTTCTCCTGAATCTTCAGGAGGTTTTAAAGGCCAAAGAAACAGTGATGTCAAGATAAGCAAGAGGGCAGGAACGCCCATAGTGCCCCCAACAGCACCAATGTCCCCCAGACCTTCTCTCAGGAGAGTTGCAAGCTTAAAAGCACAGAAGAACAGGACTGTGAAAGTTGTGTCTCCTCTAAAGAATCATAACAAGATCAGAAAAGCTAAACCCAAGCAACTCAACAATGATGAGGTAGAGGAGAAGACATTGTATGTCATCAAGATTGAAACTGAGAACAAACCTTTGGAATCCGGTCAAAACAAAAATTGTGAAGTTGAACCGTCACCACCTTCATCATCATCTTCACCCCAGTCTTTGTGCCTCCCAAACCCTGTGTCCTTTTCACCCCATGAAGGAGAAGATCATGAGTCTGAATATACAATGAGTGAAACAGAAGACTACTCTTTCTCAGAAGACAGTGAAGTTGACTATAGAGAGAATGCAGAGACCCTAAAGGAGGGTGACAAAGGGAAACCGAGAAAGTCTGGAATGGTTTGTTCTGAAGAGAAGGATGGCCAACCGTTAAAGTTTAGGAGGGGAAAGGTGGTTGACGGGAAATTTGAGAATGATAGTCCAAGGAGACTCAAATTTCGGCGGGGAAGAGTGTTGGGAGACAACCAGAATGTCAAAGCTGATGCGCAAAGGCGAAGCTTTAAGAAGAGAGGTGCTAATGGTGATACACTTGCTACTGAACCTGGTGCAGAGAAGGTTGTTTTGAGACATCAAGATGTTGAAGGAAAGAAAGATGAGAAAGGTTTGTTTAATAATGTGATCGAAGAAACAGCGAGTAAACTTGTTGAAACCCGGAAGAGTAAGGTTAAGGCCTTAGTTGGTGCTTTTGAAACAGTGATCTCACTCCAAGAGCGCAAACCTTCAGCAAGCTCTGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaM_binding

Protein Analysis

563

Amino Acids

61.95

Weight (kDa)

9.7

Isoelectric Point (pI)

55.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39380 AT5G39380 AT5G39380 AT5G39380 AT5G39380
fragaria_vesca	FvH4_6g47500 FvH4_6g47500 FvH4_6g47500 FvH4_6g47500
malus_domestica	MD09G1061400.v1.1
prunus_persica	Prupe.3G258800_v2.0.a1 Prupe.3G258800_v2.0.a1 Prupe.3G258800_v2.0.a1
pyrus_communis	pycom17g05570
rosa_chinensis	RchiOBHm_Chr2g0166531
rosa_laevigata	RLG00000021627 RLG00000023838
rosa_multiflora	Rmu_sc0000539.1_g000013 Rmu_sc0010842.1_g000006
rosa_roxburghii	Rroxscaffold_2G00084780 Rroxscaffold_6G00406250
rosa_rugosa	Rorug02G0523900 Rorug02G0524000
rosa_samantha	Rh2AG589900 Rh2BG602000 Rh2CG572700 Rh2DG612600 Rh3BG229600
rosa_wichuraiana	Rw2G049170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1434
AccII	CGCG	1 cut(s)	469
AciI	CCGC	2 cut(s)	684, 1390
AcoI	YGGCCR	1 cut(s)	1309
AcsI	RAATTY	5 cut(s)	73, 256, 400, 1352, 1382
AcuI	CTGAAG	6 cut(s)	642, 743, 753, 764, 1317, 1653
AfaI	GTAC	1 cut(s)	219
AfiI	CCNNNNNNNGG	3 cut(s)	56, 1148, 1252
AflII	CTTAAG	1 cut(s)	572
AflIII	ACRYGT	2 cut(s)	350, 598
AjiI	CACGTC	1 cut(s)	601
AjnI	CCWGG	1 cut(s)	1489
AjuI	GAANNNNNNNTTGG	4 cut(s)	167, 199, 1022, 1054
Alw26I	GTCTC	6 cut(s)	550, 930, 1235, 1369, 1401, 1507
AoxI	GGCC	4 cut(s)	700, 784, 1309, 1617
ApeKI	GCWGC	2 cut(s)	367, 491
ApoI	RAATTY	5 cut(s)	73, 256, 400, 1352, 1382
ArsI	GACNNNNNNTTYG	6 cut(s)	1115, 1147, 1337, 1368, 1369, 1400
Asp700I	GAANNNNTTC	2 cut(s)	89, 114
AspLEI	GCGC	3 cut(s)	496, 1435, 1662
AspS9I	GGNCC	1 cut(s)	714
AsuC2I	CCSGG	1 cut(s)	1600
AsuHPI	GGTGA	8 cut(s)	234, 312, 698, 1071, 1092, 1131, 1268, 1481
AvaII	GGWCC	1 cut(s)	714
BaeGI	GKGCMC	2 cut(s)	676, 840
BalI	TGGCCA	1 cut(s)	1311
BbsI	GAAGAC	6 cut(s)	232, 443, 747, 1004, 1197, 1215
BbvI	GCAGC	2 cut(s)	379, 478
BccI	CCATC	1 cut(s)	1301
BciT130I	CCWGG	1 cut(s)	1491
BclI	TGATCA	2 cut(s)	154, 303
BcnI	CCSGG	1 cut(s)	1600
BcoDI	GTCTC	6 cut(s)	550, 930, 1235, 1369, 1401, 1507
BfmI	CTRYAG	1 cut(s)	1225
BfrI	CTTAAG	1 cut(s)	572
BisI	GCNGC	2 cut(s)	368, 492
BlsI	GCNGC	2 cut(s)	369, 493
Bme1390I	CCNGG	2 cut(s)	1491, 1600
Bme18I	GGWCC	1 cut(s)	714
BmgBI	CACGTC	1 cut(s)	601
BmgT120I	GGNCC	1 cut(s)	714
BmiI	GGNNCC	2 cut(s)	145, 715
BmrFI	CCNGG	2 cut(s)	1491, 1600
BmrI	ACTGGG	1 cut(s)	1099
BmsI	GCATC	1 cut(s)	1420
BmuI	ACTGGG	1 cut(s)	1099
BpiI	GAAGAC	6 cut(s)	232, 443, 747, 1004, 1197, 1215
BpuMI	CCSGG	1 cut(s)	1600
BsaI	GGTCTC	1 cut(s)	1235
BsaJI	CCNNGG	1 cut(s)	1370
BsaWI	WCCGGW	1 cut(s)	1046
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 1148, 1252
Bse1I	ACTGG	2 cut(s)	145, 1105
BseBI	CCWGG	1 cut(s)	1491
BseDI	CCNNGG	1 cut(s)	1370
BseGI	GGATG	2 cut(s)	10, 1312
BseLI	CCNNNNNNNGG	3 cut(s)	56, 1148, 1252
BseMII	CTCAG	4 cut(s)	142, 886, 1017, 1218
BseNI	ACTGG	2 cut(s)	145, 1105
BseRI	GAGGAG	2 cut(s)	918, 1007
BseSI	GKGCMC	2 cut(s)	676, 840
BseXI	GCAGC	2 cut(s)	379, 478
BsgI	GTGCAG	2 cut(s)	291, 1515
Bsh1236I	CGCG	1 cut(s)	469
BshFI	GGCC	4 cut(s)	702, 786, 1311, 1619
BsiSI	CCGG	2 cut(s)	1047, 1600
BslFI	GGGAC	3 cut(s)	189, 727, 841
BslI	CCNNNNNNNGG	3 cut(s)	56, 1148, 1252
BsmAI	GTCTC	6 cut(s)	550, 930, 1235, 1369, 1401, 1507
BsmFI	GGGAC	3 cut(s)	189, 727, 841
BsmI	GAATGC	1 cut(s)	1240
BsnI	GGCC	4 cut(s)	702, 786, 1311, 1619
Bso31I	GGTCTC	1 cut(s)	1235
Bsp1286I	GDGCHC	2 cut(s)	676, 840
Bsp143I	GATC	6 cut(s)	154, 303, 948, 1156, 1566, 1644
BspACI	CCGC	2 cut(s)	684, 1390
BspANI	GGCC	4 cut(s)	702, 786, 1311, 1619
BspCNI	CTCAG	4 cut(s)	141, 885, 1018, 1217
BspFNI	CGCG	1 cut(s)	469
BspHI	TCATGA	2 cut(s)	151, 1159
BspLI	GGNNCC	2 cut(s)	145, 715
BspTI	CTTAAG	1 cut(s)	572
BspTNI	GGTCTC	1 cut(s)	1235
BsrI	ACTGG	2 cut(s)	145, 1105
BssECI	CCNNGG	1 cut(s)	1370
BssMI	GATC	6 cut(s)	154, 303, 948, 1156, 1566, 1644
BssT1I	CCWWGG	1 cut(s)	1370
Bst2UI	CCWGG	1 cut(s)	1491
Bst4CI	ACNGT	8 cut(s)	104, 375, 797, 913, 1077, 1214, 1317, 1642
Bst6I	CTCTTC	5 cut(s)	553, 1293, 1390, 1448, 1598
BstAFI	CTTAAG	1 cut(s)	572
BstC8I	GCNNGC	2 cut(s)	886, 1675
BstDEI	CTNAG	6 cut(s)	128, 677, 872, 1026, 1204, 1621
BstENI	CCTNNNNNAGG	1 cut(s)	1250
BstF5I	GGATG	2 cut(s)	10, 1312
BstFNI	CGCG	1 cut(s)	469
BstHHI	GCGC	3 cut(s)	496, 1435, 1662
BstKTI	GATC	6 cut(s)	157, 306, 951, 1159, 1569, 1647
BstMAI	GTCTC	6 cut(s)	550, 930, 1235, 1369, 1401, 1507
BstMBI	GATC	6 cut(s)	154, 303, 948, 1156, 1566, 1644
BstMWI	GCNNNNNNNGC	1 cut(s)	835
BstNI	CCWGG	1 cut(s)	1491
BstNSI	RCATGY	1 cut(s)	354
BstSCI	CCNGG	2 cut(s)	1489, 1598
BstSFI	CTRYAG	1 cut(s)	1225
BstSLI	GKGCMC	2 cut(s)	676, 840
BstUI	CGCG	1 cut(s)	469
BstV1I	GCAGC	2 cut(s)	379, 478
BstV2I	GAAGAC	6 cut(s)	232, 443, 747, 1004, 1197, 1215
BsuRI	GGCC	4 cut(s)	702, 786, 1311, 1619
BtgZI	GCGATG	1 cut(s)	450
BtrI	CACGTC	1 cut(s)	601
BtsCI	GGATG	2 cut(s)	10, 1312
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	5 cut(s)	109, 306, 802, 1219, 1647
Cac8I	GCNNGC	2 cut(s)	886, 1675
CciI	TCATGA	2 cut(s)	151, 1159
CfoI	GCGC	3 cut(s)	496, 1435, 1662
Cfr13I	GGNCC	1 cut(s)	714
CsiI	ACCWGGT	1 cut(s)	1489
Csp6I	GTAC	1 cut(s)	218
CviAII	CATG	7 cut(s)	152, 179, 351, 482, 505, 1145, 1160
CviQI	GTAC	1 cut(s)	218
DdeI	CTNAG	6 cut(s)	128, 677, 872, 1026, 1204, 1621
DpnI	GATC	6 cut(s)	156, 305, 950, 1158, 1568, 1646
DpnII	GATC	6 cut(s)	154, 303, 948, 1156, 1566, 1644
DraI	TTTAAA	1 cut(s)	781
EaeI	YGGCCR	1 cut(s)	1309
Eam1104I	CTCTTC	5 cut(s)	553, 1293, 1390, 1448, 1598
EarI	CTCTTC	5 cut(s)	553, 1293, 1390, 1448, 1598
Eco130I	CCWWGG	1 cut(s)	1370
Eco147I	AGGCCT	1 cut(s)	1619
Eco31I	GGTCTC	1 cut(s)	1235
Eco47I	GGWCC	1 cut(s)	714
Eco57I	CTGAAG	6 cut(s)	642, 743, 753, 764, 1317, 1653
EcoNI	CCTNNNNNAGG	1 cut(s)	1250
EcoO109I	RGGNCCY	1 cut(s)	714
EcoRII	CCWGG	1 cut(s)	1489
EcoT14I	CCWWGG	1 cut(s)	1370
ErhI	CCWWGG	1 cut(s)	1370
FaeI	CATG	7 cut(s)	155, 182, 354, 485, 508, 1148, 1163
FaqI	GGGAC	3 cut(s)	189, 727, 841
FatI	CATG	7 cut(s)	151, 178, 350, 481, 504, 1144, 1159
FauI	CCCGC	1 cut(s)	1383
FbaI	TGATCA	2 cut(s)	154, 303
Fnu4HI	GCNGC	2 cut(s)	368, 492
FokI	GGATG	2 cut(s)	17, 1319
Fsp4HI	GCNGC	2 cut(s)	368, 492
FspI	TGCGCA	1 cut(s)	1434
GlaI	GCGC	3 cut(s)	495, 1434, 1661
GluI	GCNGC	2 cut(s)	368, 492
HaeIII	GGCC	4 cut(s)	702, 786, 1311, 1619
HapII	CCGG	2 cut(s)	1047, 1600
HhaI	GCGC	3 cut(s)	496, 1435, 1662
Hin1II	CATG	7 cut(s)	155, 182, 354, 485, 508, 1148, 1163
Hin6I	GCGC	3 cut(s)	494, 1433, 1660
HinP1I	GCGC	3 cut(s)	494, 1433, 1660
HincII	GTYRAC	2 cut(s)	1222, 1345
HindII	GTYRAC	2 cut(s)	1222, 1345
HindIII	AAGCTT	2 cut(s)	886, 1444
HinfI	GANTC	6 cut(s)	115, 764, 937, 1043, 1163, 1377
HpaII	CCGG	2 cut(s)	1047, 1600
HphI	GGTGA	8 cut(s)	234, 312, 698, 1071, 1092, 1131, 1268, 1481
Hpy166II	GTNNAC	4 cut(s)	473, 1222, 1345, 1586
Hpy188I	TCNGA	7 cut(s)	131, 723, 744, 953, 1168, 1207, 1297
Hpy8I	GTNNAC	4 cut(s)	473, 1222, 1345, 1586
HpyCH4III	ACNGT	8 cut(s)	104, 375, 797, 913, 1077, 1214, 1317, 1642
HpyCH4IV	ACGT	1 cut(s)	600
HpyCH4V	TGCA	5 cut(s)	272, 593, 884, 1238, 1496
HpyF10VI	GCNNNNNNNGC	1 cut(s)	835
HpyF3I	CTNAG	6 cut(s)	128, 677, 872, 1026, 1204, 1621
HpySE526I	ACGT	1 cut(s)	600
Hsp92II	CATG	7 cut(s)	155, 182, 354, 485, 508, 1148, 1163
HspAI	GCGC	3 cut(s)	494, 1433, 1660
Ksp22I	TGATCA	2 cut(s)	154, 303
Kzo9I	GATC	6 cut(s)	154, 303, 948, 1156, 1566, 1644
Lsp1109I	GCAGC	2 cut(s)	379, 478
LweI	GCATC	1 cut(s)	1420
MabI	ACCWGGT	1 cut(s)	1489
MaeII	ACGT	1 cut(s)	600
MaeIII	GTNAC	4 cut(s)	353, 601, 1077, 1256
MalI	GATC	6 cut(s)	156, 305, 950, 1158, 1568, 1646
MboI	GATC	6 cut(s)	154, 303, 948, 1156, 1566, 1644
MfeI	CAATTG	1 cut(s)	387
MhlI	GDGCHC	2 cut(s)	676, 840
MlsI	TGGCCA	1 cut(s)	1311
MluNI	TGGCCA	1 cut(s)	1311
MlyI	GAGTC	2 cut(s)	1172, 1371
MmeI	TCCRAC	1 cut(s)	257
Mox20I	TGGCCA	1 cut(s)	1311
MroXI	GAANNNNTTC	2 cut(s)	89, 114
MscI	TGGCCA	1 cut(s)	1311
MseI	TTAA	8 cut(s)	98, 573, 780, 890, 1319, 1449, 1557, 1614
MslI	CAYNNNNRTG	2 cut(s)	486, 1521
Msp20I	TGGCCA	1 cut(s)	1311
MspCI	CTTAAG	1 cut(s)	572
MspI	CCGG	2 cut(s)	1047, 1600
MspR9I	CCNGG	2 cut(s)	1491, 1600
MunI	CAATTG	1 cut(s)	387
Mva1269I	GAATGC	1 cut(s)	1240
MvaI	CCWGG	1 cut(s)	1491
MvnI	CGCG	1 cut(s)	469
MwoI	GCNNNNNNNGC	1 cut(s)	835
NciI	CCSGG	1 cut(s)	1600
NdeII	GATC	6 cut(s)	154, 303, 948, 1156, 1566, 1644
NlaIII	CATG	7 cut(s)	155, 182, 354, 485, 508, 1148, 1163
NlaIV	GGNNCC	2 cut(s)	145, 715
NmuCI	GTSAC	3 cut(s)	601, 1077, 1256
NsbI	TGCGCA	1 cut(s)	1434
NspI	RCATGY	1 cut(s)	354
PagI	TCATGA	2 cut(s)	151, 1159
PceI	AGGCCT	1 cut(s)	1619
PciI	ACATGT	1 cut(s)	350
PctI	GAATGC	1 cut(s)	1240
PdmI	GAANNNNTTC	2 cut(s)	89, 114
PfeI	GAWTC	4 cut(s)	115, 764, 937, 1043
PkrI	GCNGC	2 cut(s)	369, 493
PleI	GAGTC	2 cut(s)	1171, 1371
PpsI	GAGTC	2 cut(s)	1171, 1371
PpuMI	RGGWCCY	1 cut(s)	714
PscI	ACATGT	1 cut(s)	350
Psp5II	RGGWCCY	1 cut(s)	714
Psp6I	CCWGG	1 cut(s)	1489
PspGI	CCWGG	1 cut(s)	1489
PspN4I	GGNNCC	2 cut(s)	145, 715
PspPI	GGNCC	1 cut(s)	714
PspPPI	RGGWCCY	1 cut(s)	714
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
RseI	CAYNNNNRTG	2 cut(s)	486, 1521
SaqAI	TTAA	8 cut(s)	98, 573, 780, 890, 1319, 1449, 1557, 1614
SatI	GCNGC	2 cut(s)	368, 492
Sau3AI	GATC	6 cut(s)	154, 303, 948, 1156, 1566, 1644
Sau96I	GGNCC	1 cut(s)	714
SchI	GAGTC	2 cut(s)	1172, 1371
ScrFI	CCNGG	2 cut(s)	1491, 1600
SduI	GDGCHC	2 cut(s)	676, 840
SexAI	ACCWGGT	1 cut(s)	1489
SfaNI	GCATC	1 cut(s)	1420
SfcI	CTRYAG	1 cut(s)	1225
SinI	GGWCC	1 cut(s)	714
SmiMI	CAYNNNNRTG	2 cut(s)	486, 1521
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
SseBI	AGGCCT	1 cut(s)	1619
SsiI	CCGC	2 cut(s)	684, 1390
StuI	AGGCCT	1 cut(s)	1619
StyD4I	CCNGG	2 cut(s)	1489, 1598
StyI	CCWWGG	1 cut(s)	1370
TaaI	ACNGT	8 cut(s)	104, 375, 797, 913, 1077, 1214, 1317, 1642
TaiI	ACGT	1 cut(s)	603
TaqI	TCGA	1 cut(s)	1569
TfiI	GAWTC	4 cut(s)	115, 764, 937, 1043
Tru1I	TTAA	8 cut(s)	98, 573, 780, 890, 1319, 1449, 1557, 1614
Tru9I	TTAA	8 cut(s)	98, 573, 780, 890, 1319, 1449, 1557, 1614
TscAI	CASTG	5 cut(s)	109, 306, 802, 1219, 1647
TseFI	GTSAC	3 cut(s)	601, 1077, 1256
TseI	GCWGC	2 cut(s)	367, 491
Tsp45I	GTSAC	3 cut(s)	601, 1077, 1256
TspDTI	ATGAA	6 cut(s)	21, 195, 510, 521, 1077, 1161
TspGWI	ACGGA	1 cut(s)	205
TspRI	CASTG	5 cut(s)	109, 306, 802, 1219, 1647
Vha464I	CTTAAG	1 cut(s)	572
VpaK11BI	GGWCC	1 cut(s)	714
XagI	CCTNNNNNAGG	1 cut(s)	1250
XapI	RAATTY	5 cut(s)	73, 256, 400, 1352, 1382
XceI	RCATGY	1 cut(s)	354
XcmI	CCANNNNNNNNNTGG	1 cut(s)	404
XmnI	GAANNNNTTC	2 cut(s)	89, 114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.