Rroxscaffold_6G00406250

Plant calmodulin-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0005380
Physical Location & Seq
Reverse (-)
28766548 .. 28767432
885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00406250.1

Sequence Viewer

Length: 426 bp
ATGATGAGACTCCATAGAAGACCTTGTATGTCATTAAGATTAAGACCGAGATCTGATCAAAACAAAAATTGTGAAGGTCCCTCACCACCTTCATCCTCCTCATCATCGCCCAAGTCTTTGTCCCTCCCAAACAGCAGGTCCCTTTCACCCCATGACGGAGAAGATCAAGAGTCCGAATATACAATGACAGAAACAGAAGAGGACTCTTTCTCAAAAGACAATGAAGTTGACAACGAAGAAAATGTAGAAACCCTAGATGAGGATTACAAAGGGAAGCCCGGAAAGTCCGGGATGAGTCCGGATCCTAGATGTGGCCAACAACATGTTATAGGGCCCCGCCATGCTCGCTGGCGTACATCTCCGACTCCGACACCAAGAAGTGACGAAATTAAGGTTTTGGAGATTGATTTGGGGGAAAATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CaM_binding

Protein Analysis

141

Amino Acids

15.87

Weight (kDa)

5.04

Isoelectric Point (pI)

84.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 126
AccIII TCCGGA 1 cut(s) 298
AciI CCGC 1 cut(s) 337
AclWI GGATC 2 cut(s) 296, 309
AcoI YGGCCR 1 cut(s) 313
AfaI GTAC 1 cut(s) 355
AfiI CCNNNNNNNGG 3 cut(s) 155, 259, 311
AflIII ACRYGT 1 cut(s) 322
AlwI GGATC 2 cut(s) 296, 309
Aor13HI TCCGGA 1 cut(s) 298
AoxI GGCC 2 cut(s) 313, 332
ApaI GGGCCC 1 cut(s) 336
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
AspS9I GGNCC 4 cut(s) 77, 138, 332, 333
AsuC2I CCSGG 2 cut(s) 279, 289
AsuHPI GGTGA 2 cut(s) 75, 138
AvaII GGWCC 2 cut(s) 77, 138
BaeGI GKGCMC 1 cut(s) 336
BalI TGGCCA 1 cut(s) 315
BamHI GGATCC 1 cut(s) 301
BanII GRGCYC 1 cut(s) 336
BbsI GAAGAC 1 cut(s) 25
BclI TGATCA 1 cut(s) 55
BcnI CCSGG 2 cut(s) 279, 289
BfaI CTAG 2 cut(s) 254, 306
BfuAI ACCTGC 1 cut(s) 126
BglII AGATCT 1 cut(s) 50
Bme1390I CCNGG 2 cut(s) 279, 289
Bme18I GGWCC 2 cut(s) 77, 138
BmgT120I GGNCC 4 cut(s) 77, 138, 332, 333
BmiI GGNNCC 5 cut(s) 79, 140, 303, 334, 335
BmrFI CCNGG 2 cut(s) 279, 289
BpiI GAAGAC 1 cut(s) 25
BpuMI CCSGG 2 cut(s) 279, 289
BsaWI WCCGGW 1 cut(s) 298
Bsc4I CCNNNNNNNGG 3 cut(s) 155, 259, 311
BseAI TCCGGA 1 cut(s) 298
BseGI GGATG 2 cut(s) 92, 297
BseLI CCNNNNNNNGG 3 cut(s) 155, 259, 311
BseRI GAGGAG 1 cut(s) 88
BseSI GKGCMC 1 cut(s) 336
BshFI GGCC 2 cut(s) 315, 334
BsiSI CCGG 3 cut(s) 279, 288, 299
BslFI GGGAC 3 cut(s) 63, 106, 124
BslI CCNNNNNNNGG 3 cut(s) 155, 259, 311
BsmFI GGGAC 3 cut(s) 63, 106, 124
BsnI GGCC 2 cut(s) 315, 334
Bsp120I GGGCCC 1 cut(s) 332
Bsp1286I GDGCHC 1 cut(s) 336
Bsp13I TCCGGA 1 cut(s) 298
Bsp143I GATC 4 cut(s) 50, 55, 163, 301
BspACI CCGC 1 cut(s) 337
BspANI GGCC 2 cut(s) 315, 334
BspEI TCCGGA 1 cut(s) 298
BspLI GGNNCC 5 cut(s) 79, 140, 303, 334, 335
BspMI ACCTGC 1 cut(s) 126
BspPI GGATC 2 cut(s) 296, 309
BssMI GATC 4 cut(s) 50, 55, 163, 301
Bst6I CTCTTC 1 cut(s) 192
BstC8I GCNNGC 2 cut(s) 346, 350
BstENI CCTNNNNNAGG 1 cut(s) 257
BstF5I GGATG 2 cut(s) 92, 297
BstKTI GATC 4 cut(s) 53, 58, 166, 304
BstMBI GATC 4 cut(s) 50, 55, 163, 301
BstMWI GCNNNNNNNGC 1 cut(s) 345
BstNSI RCATGY 1 cut(s) 326
BstSCI CCNGG 2 cut(s) 277, 287
BstSLI GKGCMC 1 cut(s) 336
BstV2I GAAGAC 1 cut(s) 25
BstX2I RGATCY 2 cut(s) 50, 301
BstYI RGATCY 2 cut(s) 50, 301
BsuRI GGCC 2 cut(s) 315, 334
BtgZI GCGATG 1 cut(s) 90
BtsCI GGATG 2 cut(s) 92, 297
BveI ACCTGC 1 cut(s) 126
Cac8I GCNNGC 2 cut(s) 346, 350
Cfr13I GGNCC 4 cut(s) 77, 138, 332, 333
Csp6I GTAC 1 cut(s) 354
CviAII CATG 3 cut(s) 152, 323, 341
CviJI RGCY 3 cut(s) 277, 315, 334
CviKI_1 RGCY 3 cut(s) 277, 315, 334
CviQI GTAC 1 cut(s) 354
DpnI GATC 4 cut(s) 52, 57, 165, 303
DpnII GATC 4 cut(s) 50, 55, 163, 301
EaeI YGGCCR 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Eco24I GRGCYC 1 cut(s) 336
Eco47I GGWCC 2 cut(s) 77, 138
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoO109I RGGNCCY 4 cut(s) 77, 138, 332, 333
EcoT38I GRGCYC 1 cut(s) 336
FaeI CATG 3 cut(s) 155, 326, 344
FaiI YATR 7 cut(s) 15, 29, 153, 180, 324, 329, 342
FaqI GGGAC 3 cut(s) 63, 106, 124
FatI CATG 3 cut(s) 151, 322, 340
FauI CCCGC 1 cut(s) 344
FbaI TGATCA 1 cut(s) 55
FokI GGATG 2 cut(s) 79, 304
FriOI GRGCYC 1 cut(s) 336
FspBI CTAG 2 cut(s) 254, 306
HaeIII GGCC 2 cut(s) 315, 334
HapII CCGG 3 cut(s) 279, 288, 299
Hin1II CATG 3 cut(s) 155, 326, 344
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 5 cut(s) 9, 170, 203, 295, 364
HpaII CCGG 3 cut(s) 279, 288, 299
HphI GGTGA 2 cut(s) 75, 138
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 4 cut(s) 55, 175, 363, 369
Hpy188III TCNNGA 2 cut(s) 167, 299
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 2 cut(s) 68, 99
HpyF10VI GCNNNNNNNGC 1 cut(s) 345
Hsp92II CATG 3 cut(s) 155, 326, 344
Kpn2I TCCGGA 1 cut(s) 298
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 4 cut(s) 50, 55, 163, 301
LpnPI CCDG 5 cut(s) 121, 292, 301, 312, 334
MaeI CTAG 2 cut(s) 254, 306
MaeIII GTNAC 1 cut(s) 380
MalI GATC 4 cut(s) 52, 57, 165, 303
MboI GATC 4 cut(s) 50, 55, 163, 301
MboII GAAGA 4 cut(s) 30, 173, 209, 248
MflI RGATCY 2 cut(s) 50, 301
MhlI GDGCHC 1 cut(s) 336
MlsI TGGCCA 1 cut(s) 315
MluCI AATT 2 cut(s) 67, 387
MluNI TGGCCA 1 cut(s) 315
MlyI GAGTC 5 cut(s) 3, 179, 197, 304, 358
MmeI TCCRAC 2 cut(s) 386, 392
MnlI CCTC 6 cut(s) 91, 106, 109, 134, 193, 253
Mox20I TGGCCA 1 cut(s) 315
MroI TCCGGA 1 cut(s) 298
MscI TGGCCA 1 cut(s) 315
MseI TTAA 3 cut(s) 35, 41, 390
Msp20I TGGCCA 1 cut(s) 315
MspI CCGG 3 cut(s) 279, 288, 299
MspR9I CCNGG 2 cut(s) 279, 289
MwoI GCNNNNNNNGC 1 cut(s) 345
NciI CCSGG 2 cut(s) 279, 289
NdeII GATC 4 cut(s) 50, 55, 163, 301
NlaIII CATG 3 cut(s) 155, 326, 344
NlaIV GGNNCC 5 cut(s) 79, 140, 303, 334, 335
NmuCI GTSAC 1 cut(s) 380
NspI RCATGY 1 cut(s) 326
PciI ACATGT 1 cut(s) 322
PfoI TCCNGGA 1 cut(s) 287
PleI GAGTC 5 cut(s) 3, 178, 197, 303, 358
PpsI GAGTC 5 cut(s) 3, 178, 197, 303, 358
PpuMI RGGWCCY 2 cut(s) 77, 138
PscI ACATGT 1 cut(s) 322
Psp5II RGGWCCY 2 cut(s) 77, 138
PspN4I GGNNCC 5 cut(s) 79, 140, 303, 334, 335
PspOMI GGGCCC 1 cut(s) 332
PspPI GGNCC 4 cut(s) 77, 138, 332, 333
PspPPI RGGWCCY 2 cut(s) 77, 138
PsuI RGATCY 2 cut(s) 50, 301
RsaI GTAC 1 cut(s) 355
RsaNI GTAC 1 cut(s) 354
SaqAI TTAA 3 cut(s) 35, 41, 390
Sau3AI GATC 4 cut(s) 50, 55, 163, 301
Sau96I GGNCC 4 cut(s) 77, 138, 332, 333
SchI GAGTC 5 cut(s) 3, 179, 197, 304, 358
ScrFI CCNGG 2 cut(s) 279, 289
SduI GDGCHC 1 cut(s) 336
SetI ASST 5 cut(s) 25, 79, 91, 140, 396
SinI GGWCC 2 cut(s) 77, 138
Sse9I AATT 2 cut(s) 67, 387
SsiI CCGC 1 cut(s) 337
SspMI CTAG 2 cut(s) 254, 306
StyD4I CCNGG 2 cut(s) 277, 287
TaqII GACCGA 1 cut(s) 61
TasI AATT 2 cut(s) 67, 387
Tru1I TTAA 3 cut(s) 35, 41, 390
Tru9I TTAA 3 cut(s) 35, 41, 390
TseFI GTSAC 1 cut(s) 380
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 2 cut(s) 81, 237
TspGWI ACGGA 1 cut(s) 171
VpaK11BI GGWCC 2 cut(s) 77, 138
XagI CCTNNNNNAGG 1 cut(s) 257
XceI RCATGY 1 cut(s) 326
XspI CTAG 2 cut(s) 254, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.