AT5G40610

Glycerol-3-phosphate dehydrogenase NAD( )

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014375
Physical Location & Seq
Reverse (-)
16264829 .. 16267406
2578 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G40610.1

Sequence Viewer

Length: 1203 bp
ATGCGCTTCCGATCATTCTTCTTCTCCTCCTCTATCTTCTCCCTTTCACATTCTCGCTCTCCTTCTCTTTCTTCCTCTCGTTTCTCCTCTCTCTCCGCCGCTATGTCTCCTGCTCTCGAGAAATCCCGACAAGGCAATGGTGGATGTAATGATGATTCGAAATCTAAGGTCACGGTCGTTGGTAGTGGCAATTGGGGAAGTGTTGCTGCTAAGCTCATTGCTTCTAATGCCCTCAAGCTTCCTTCTTTCCATGATGAAGTGAGGATGTGGGTGTTTGAGGAGGTTCTACCAAATGGTGAGAAGCTCAATGATGTTATCAACAAGACCAATGAAAATGTCAAGTACCTCCCTGGGATTAAGCTAGGAAGAAATGTTGTTGCGGATCCTGACCTTGAAAATGCAGTGAAGGACGCGAACATGTTGGTTTTTGTTACACCGCATCAGTTTATGGATGGTATATGCAAGAAGTTAGATGGAAAGATCACAGGAGATGTTGAGGCTATATCTCTTGTTAAAGGAATGGAAGTGAAGAAGGAAGGTCCTTGTATGATCTCAAGTCTCATTTCCAAGCAACTTGGTATCAATTGTTGTGTTCTTATGGGCGCAAACATTGCAAACGAGATAGCTGTGGAGAAGTTTAGTGAAGCAACGGTTGGATATAGAGGGAGTAGAGAAATAGCGGACACATGGGTTCAGTTGTTTAGTACTCCGTATTTTATGGTCACACCGGTCCATGATGTGGAAGGAGTAGAGTTATGTGGGACTTTGAAGAATGTAGTTGCTATTGCAGCGGGTTTCGTGGACGGTTTGGAAATGGGTAATAACACAAAGGCTGCAATCATGAGGATTGGTCTAAGAGAGATGAAAGCACTCTCAAAGCTTTTGTTTCCATCTGTTAAAGATAGTACTTTCTTCGAGAGCTGCGGTGTAGCAGATGTCATTACAACTTGCTTAGGAGGAAGAAACCGGAGAGTTGCGGAAGCATTTGCAAAAAGCAGAGGAAAAAGGTCTTTTGATGAGCTTGAAGCAGAGATGCTACAAGGGCAAAAGCTACAGGGGGTATCGACGGCAAGAGAGGTCTACGAGGTGTTGAAACATTGTGGATGGTTGGAGATGTTTCCGCTCTTTTCAACGGTTCACCAAATCTGCACTGGTCGTCTTCAACCTGAAGCCATCGTCCAATACCGCGAGAACAAACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00564 ko01110 ko04011 map00564 map01110 map04011
Pfam Domains
Protein Families
NAD_Gly3P_dh_C NAD_Gly3P_dh_N

Protein Analysis

400

Amino Acids

43.79

Weight (kDa)

8.25

Isoelectric Point (pI)

30.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_Gly3P_dh_N PF01210 56 - 220 2.1e-40 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
NAD_Gly3P_dh_C PF07479 246 - 394 5.7e-46 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014375)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40610
fragaria_vesca FvH4_6g52110 FvH4_6g52110
malus_domestica MD09G1020100.v1.1 MD17G1020500.v1.1 MD17G1020700.v1.1
prunus_persica Prupe.3G296200_v2.0.a1 Prupe.3G296200_v2.0.a1
pyrus_communis pycom111g01680 pycom17g01730
rosa_chinensis RchiOBHm_Chr2g0173621
rosa_laevigata RLG00000022206
rosa_multiflora Rmu_sc0002538.1_g000016
rosa_roxburghii Rroxscaffold_2G00078740
rosa_rugosa Rorug02G0571700
rosa_samantha Rh2DG676300
rosa_wichuraiana Rw2G053400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 739
AccBSI CCGCTC 1 cut(s) 1123
AccI GTMKAC 1 cut(s) 1080
AccII CGCG 2 cut(s) 413, 1188
AclWI GGATC 2 cut(s) 377, 390
AcuI CTGAAG 1 cut(s) 1188
AfaI GTAC 3 cut(s) 344, 706, 907
AfiI CCNNNNNNNGG 1 cut(s) 739
AflIII ACRYGT 1 cut(s) 417
AgeI ACCGGT 1 cut(s) 727
AgsI TTSAA 6 cut(s) 395, 769, 1025, 1093, 1131, 1163
AjnI CCWGG 1 cut(s) 349
AjuI GAANNNNNNNTTGG 2 cut(s) 636, 668
AluBI AGCT 9 cut(s) 214, 238, 304, 361, 626, 880, 921, 1021, 1051
AluI AGCT 9 cut(s) 214, 238, 304, 361, 626, 880, 921, 1021, 1051
Alw26I GTCTC 2 cut(s) 111, 563
AlwI GGATC 2 cut(s) 377, 390
Ama87I CYCGRG 1 cut(s) 116
ApeKI GCWGC 4 cut(s) 206, 788, 833, 921
AsiGI ACCGGT 1 cut(s) 727
AspLEI GCGC 2 cut(s) 6, 605
AspS9I GGNCC 2 cut(s) 539, 730
AsuHPI GGTGA 2 cut(s) 308, 1130
AsuII TTCGAA 1 cut(s) 158
AvaI CYCGRG 1 cut(s) 116
AvaII GGWCC 2 cut(s) 539, 730
BamHI GGATCC 1 cut(s) 382
BbsI GAAGAC 1 cut(s) 1151
BbvI GCAGC 4 cut(s) 193, 800, 820, 908
BccI CCATC 5 cut(s) 446, 467, 898, 1098, 1181
BceAI ACGGC 1 cut(s) 1083
BciT130I CCWGG 1 cut(s) 351
BcoDI GTCTC 2 cut(s) 111, 563
BfaI CTAG 1 cut(s) 362
BfmI CTRYAG 1 cut(s) 1052
BisI GCNGC 5 cut(s) 99, 207, 789, 834, 922
BlpI GCTNAGC 1 cut(s) 210
BlsI GCNGC 5 cut(s) 100, 208, 790, 835, 923
BmcAI AGTACT 2 cut(s) 706, 907
Bme1390I CCNGG 1 cut(s) 351
Bme18I GGWCC 2 cut(s) 539, 730
BmeT110I CYCGRG 1 cut(s) 116
BmgT120I GGNCC 2 cut(s) 539, 730
BmiI GGNNCC 1 cut(s) 384
BmrFI CCNGG 1 cut(s) 351
BmsI GCATC 2 cut(s) 448, 1023
BpiI GAAGAC 1 cut(s) 1151
Bpu10I CCTNAGC 1 cut(s) 952
Bpu1102I GCTNAGC 1 cut(s) 210
Bpu14I TTCGAA 1 cut(s) 158
BpuEI CTTGAG 2 cut(s) 218, 538
BsaJI CCNNGG 2 cut(s) 349, 350
BsaWI WCCGGW 2 cut(s) 727, 966
Bsc4I CCNNNNNNNGG 1 cut(s) 739
Bse118I RCCGGY 1 cut(s) 727
Bse1I ACTGG 1 cut(s) 1156
Bse3DI GCAATG 3 cut(s) 142, 216, 609
BseBI CCWGG 1 cut(s) 351
BseDI CCNNGG 2 cut(s) 349, 350
BseGI GGATG 4 cut(s) 149, 270, 457, 1109
BseLI CCNNNNNNNGG 1 cut(s) 739
BseMI GCAATG 3 cut(s) 142, 216, 609
BseNI ACTGG 1 cut(s) 1156
BseRI GAGGAG 4 cut(s) 16, 19, 76, 293
BseXI GCAGC 4 cut(s) 193, 800, 820, 908
BsgI GTGCAG 1 cut(s) 1132
Bsh1236I CGCG 2 cut(s) 413, 1188
Bsh1285I CGRYCG 1 cut(s) 177
BshTI ACCGGT 1 cut(s) 727
BsiEI CGRYCG 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 116
BsiSI CCGG 2 cut(s) 728, 967
BslFI GGGAC 1 cut(s) 775
BslI CCNNNNNNNGG 1 cut(s) 739
BsmAI GTCTC 2 cut(s) 111, 563
BsmFI GGGAC 1 cut(s) 775
BsoBI CYCGRG 1 cut(s) 116
Bsp119I TTCGAA 1 cut(s) 158
Bsp143I GATC 4 cut(s) 11, 382, 480, 549
Bsp1720I GCTNAGC 1 cut(s) 210
BspFNI CGCG 2 cut(s) 413, 1188
BspHI TCATGA 1 cut(s) 840
BspLI GGNNCC 1 cut(s) 384
BspPI GGATC 2 cut(s) 377, 390
BspT104I TTCGAA 1 cut(s) 158
BsrBI CCGCTC 1 cut(s) 1123
BsrDI GCAATG 3 cut(s) 142, 216, 609
BsrFI RCCGGY 1 cut(s) 727
BsrI ACTGG 1 cut(s) 1156
BssAI RCCGGY 1 cut(s) 727
BssECI CCNNGG 2 cut(s) 349, 350
BssMI GATC 4 cut(s) 11, 382, 480, 549
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 4 cut(s) 175, 652, 806, 1135
BstAPI GCANNNNNTGC 1 cut(s) 611
BstBI TTCGAA 1 cut(s) 158
BstDEI CTNAG 4 cut(s) 165, 210, 854, 952
BstF5I GGATG 4 cut(s) 149, 270, 457, 1109
BstFNI CGCG 2 cut(s) 413, 1188
BstHHI GCGC 2 cut(s) 6, 605
BstKTI GATC 4 cut(s) 14, 385, 483, 552
BstMAI GTCTC 2 cut(s) 111, 563
BstMBI GATC 4 cut(s) 11, 382, 480, 549
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 4 cut(s) 227, 611, 788, 1042
BstNI CCWGG 1 cut(s) 351
BstNSI RCATGY 1 cut(s) 421
BstSCI CCNGG 1 cut(s) 349
BstSFI CTRYAG 1 cut(s) 1052
BstUI CGCG 2 cut(s) 413, 1188
BstV1I GCAGC 4 cut(s) 193, 800, 820, 908
BstV2I GAAGAC 1 cut(s) 1151
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BtsCI GGATG 4 cut(s) 149, 270, 457, 1109
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 2 cut(s) 408, 1149
CciI TCATGA 1 cut(s) 840
CfoI GCGC 2 cut(s) 6, 605
Cfr10I RCCGGY 1 cut(s) 727
Cfr13I GGNCC 2 cut(s) 539, 730
CseI GACGC 1 cut(s) 419
Csp6I GTAC 3 cut(s) 343, 705, 906
CspAI ACCGGT 1 cut(s) 727
CviAII CATG 5 cut(s) 251, 418, 687, 734, 841
CviQI GTAC 3 cut(s) 343, 705, 906
DdeI CTNAG 4 cut(s) 165, 210, 854, 952
DpnI GATC 4 cut(s) 13, 384, 482, 551
DpnII GATC 4 cut(s) 11, 382, 480, 549
EciI GGCGGA 1 cut(s) 85
Eco47I GGWCC 2 cut(s) 539, 730
Eco57I CTGAAG 1 cut(s) 1188
Eco88I CYCGRG 1 cut(s) 116
EcoO109I RGGNCCY 1 cut(s) 539
EcoRII CCWGG 1 cut(s) 349
FaeI CATG 5 cut(s) 254, 421, 690, 737, 844
FaqI GGGAC 1 cut(s) 775
FatI CATG 5 cut(s) 250, 417, 686, 733, 840
FauI CCCGC 1 cut(s) 784
FblI GTMKAC 1 cut(s) 1080
Fnu4HI GCNGC 5 cut(s) 99, 207, 789, 834, 922
FokI GGATG 4 cut(s) 156, 277, 464, 1116
Fsp4HI GCNGC 5 cut(s) 99, 207, 789, 834, 922
FspBI CTAG 1 cut(s) 362
GlaI GCGC 2 cut(s) 5, 604
GluI GCNGC 5 cut(s) 99, 207, 789, 834, 922
HapII CCGG 2 cut(s) 728, 967
HgaI GACGC 1 cut(s) 419
HhaI GCGC 2 cut(s) 6, 605
Hin1II CATG 5 cut(s) 254, 421, 690, 737, 844
Hin6I GCGC 2 cut(s) 4, 603
HinP1I GCGC 2 cut(s) 4, 603
HindIII AAGCTT 2 cut(s) 236, 878
HinfI GANTC 1 cut(s) 155
HpaII CCGG 2 cut(s) 728, 967
HphI GGTGA 2 cut(s) 308, 1130
Hpy166II GTNNAC 3 cut(s) 802, 1081, 1138
Hpy188I TCNGA 1 cut(s) 11
Hpy188III TCNNGA 6 cut(s) 116, 118, 126, 386, 841, 916
Hpy8I GTNNAC 3 cut(s) 802, 1081, 1138
Hpy99I CGWCG 1 cut(s) 1069
HpyAV CCTTC 6 cut(s) 72, 252, 400, 526, 530, 737
HpyCH4III ACNGT 4 cut(s) 175, 652, 806, 1135
HpyCH4V TGCA 7 cut(s) 401, 462, 614, 788, 836, 989, 1149
HpyF10VI GCNNNNNNNGC 4 cut(s) 227, 611, 788, 1042
HpyF3I CTNAG 4 cut(s) 165, 210, 854, 952
Hsp92II CATG 5 cut(s) 254, 421, 690, 737, 844
HspAI GCGC 2 cut(s) 4, 603
Kzo9I GATC 4 cut(s) 11, 382, 480, 549
Lsp1109I GCAGC 4 cut(s) 193, 800, 820, 908
LweI GCATC 2 cut(s) 448, 1023
MaeI CTAG 1 cut(s) 362
MaeIII GTNAC 3 cut(s) 169, 430, 721
MalI GATC 4 cut(s) 13, 384, 482, 551
MbiI CCGCTC 1 cut(s) 1123
MboI GATC 4 cut(s) 11, 382, 480, 549
MfeI CAATTG 2 cut(s) 190, 583
MflI RGATCY 1 cut(s) 382
MluCI AATT 2 cut(s) 190, 583
MmeI TCCRAC 2 cut(s) 634, 1089
MseI TTAA 3 cut(s) 357, 513, 897
MspA1I CMGCKG 1 cut(s) 791
MspI CCGG 2 cut(s) 728, 967
MspR9I CCNGG 1 cut(s) 351
MunI CAATTG 2 cut(s) 190, 583
MvaI CCWGG 1 cut(s) 351
MvnI CGCG 2 cut(s) 413, 1188
MwoI GCNNNNNNNGC 4 cut(s) 227, 611, 788, 1042
NdeII GATC 4 cut(s) 11, 382, 480, 549
NlaIII CATG 5 cut(s) 254, 421, 690, 737, 844
NlaIV GGNNCC 1 cut(s) 384
NmuCI GTSAC 2 cut(s) 169, 721
NspI RCATGY 1 cut(s) 421
NspV TTCGAA 1 cut(s) 158
PaeR7I CTCGAG 1 cut(s) 116
PagI TCATGA 1 cut(s) 840
PasI CCCWGGG 1 cut(s) 350
PciI ACATGT 1 cut(s) 417
PfeI GAWTC 1 cut(s) 155
PflMI CCANNNNNTGG 1 cut(s) 739
PinAI ACCGGT 1 cut(s) 727
PkrI GCNGC 5 cut(s) 100, 208, 790, 835, 923
PpuMI RGGWCCY 1 cut(s) 539
PscI ACATGT 1 cut(s) 417
Psp5II RGGWCCY 1 cut(s) 539
Psp6I CCWGG 1 cut(s) 349
PspGI CCWGG 1 cut(s) 349
PspN4I GGNNCC 1 cut(s) 384
PspPI GGNCC 2 cut(s) 539, 730
PspPPI RGGWCCY 1 cut(s) 539
PsuI RGATCY 1 cut(s) 382
RsaI GTAC 3 cut(s) 344, 706, 907
RsaNI GTAC 3 cut(s) 343, 705, 906
SaqAI TTAA 3 cut(s) 357, 513, 897
SatI GCNGC 5 cut(s) 99, 207, 789, 834, 922
Sau3AI GATC 4 cut(s) 11, 382, 480, 549
Sau96I GGNCC 2 cut(s) 539, 730
ScaI AGTACT 2 cut(s) 706, 907
ScrFI CCNGG 1 cut(s) 351
SfaNI GCATC 2 cut(s) 448, 1023
SfcI CTRYAG 1 cut(s) 1052
Sfr274I CTCGAG 1 cut(s) 116
SfuI TTCGAA 1 cut(s) 158
SinI GGWCC 2 cut(s) 539, 730
SlaI CTCGAG 1 cut(s) 116
SmlI CTYRAG 3 cut(s) 116, 233, 553
SmoI CTYRAG 3 cut(s) 116, 233, 553
Sse9I AATT 2 cut(s) 190, 583
SspMI CTAG 1 cut(s) 362
StyD4I CCNGG 1 cut(s) 349
TaaI ACNGT 4 cut(s) 175, 652, 806, 1135
TaqI TCGA 4 cut(s) 117, 158, 915, 1064
TasI AATT 2 cut(s) 190, 583
TatI WGTACW 2 cut(s) 704, 905
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 3 cut(s) 357, 513, 897
Tru9I TTAA 3 cut(s) 357, 513, 897
TscAI CASTG 2 cut(s) 408, 1156
TseFI GTSAC 2 cut(s) 169, 721
TseI GCWGC 4 cut(s) 206, 788, 833, 921
Tsp45I GTSAC 2 cut(s) 169, 721
TspDTI ATGAA 3 cut(s) 270, 345, 878
TspGWI ACGGA 1 cut(s) 699
TspRI CASTG 2 cut(s) 408, 1156
Van91I CCANNNNNTGG 1 cut(s) 739
VpaK11BI GGWCC 2 cut(s) 539, 730
XceI RCATGY 1 cut(s) 421
XcmI CCANNNNNNNNNTGG 1 cut(s) 1148
XhoI CTCGAG 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 1080
XspI CTAG 1 cut(s) 362
ZrmI AGTACT 2 cut(s) 706, 907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.