Rmu_sc0002538.1_g000016

glycerol-3-phosphate dehydrogenase NAD(

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002538.1
OG0014375
Physical Location & Seq
Forward (+)
54778 .. 57374
2597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002538.1_g000016.1.cds

Sequence Viewer

Length: 1116 bp
atggctccacaggaagcagcagctagtgtggcccagaagagctcctccattgatgaacatgctcctctaagaaacagagtcacagttgtgggcagtggcaactggggtagtgtggctgctaagctcattgcctccaacaccattaggcttccttcttttcatgatgaagtgagaatgtgggtgtttgaggagacattgccaagtggtgagaagctcacagatgccatcaacacaagaaatgaaaatgtaaaatatctgcctggcataaaacttgggagaaatgttgttgcagatccagaccttgttaatgcagtgactggttcaaacatgttggtgtttgttactccacatcaattcatggagggtatatgcaaaagactagcggggaatataagcggggatgtggaggctatttcccttattaaaggaatggaggtcaagatggaaggcccatgcatgatctctacactcatcactgagcaactgggtatcaattgttgtgttctaatgggagcaaacatagctaatgagattgctgtggagaaatttagtgaagccacagttggatacagagaaaacaaagaggttgcagataaatgggttcaactgtttagtacctcctacttcatagtcacacctatccaagatgtggaaggagtagaactgtgtggtaccctgaaaaatgttgtggctatagcagcaggttttgtggatggcttggacatgggaaataacacaaaggctgcaattatgagaattggtctaagagagatgaaggcattttccaaaatgttattttcatctgtcaaggacagcaccttctttgaaagctgcggtgttgctgatctcatcacaacatgcttgggaggaagaaacaggaaagttgcagaagctttcgcaaagaatggagggaaaagatcgttcgatgagctcgaagcagaaatgctgcagggtcaaaaattacagggtgtgtcaacagcaaaagaggtttatgcagttttaagccaccgtgggtggttacagttctttccgctctttgcaacagttcatgagatctgcattggcactcttcctccttcagccatcgtcgaacacagtgagcgcacacctaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00564 ko01110 ko04011 map00564 map01110 map04011
Pfam Domains
Protein Families
NAD_Gly3P_dh_C NAD_Gly3P_dh_N

Protein Analysis

371

Amino Acids

40.25

Weight (kDa)

5.8

Isoelectric Point (pI)

28.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014375)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40610
fragaria_vesca FvH4_6g52110 FvH4_6g52110
malus_domestica MD09G1020100.v1.1 MD17G1020500.v1.1 MD17G1020700.v1.1
prunus_persica Prupe.3G296200_v2.0.a1 Prupe.3G296200_v2.0.a1
pyrus_communis pycom111g01680 pycom17g01730
rosa_chinensis RchiOBHm_Chr2g0173621
rosa_laevigata RLG00000022206
rosa_multiflora Rmu_sc0002538.1_g000016
rosa_roxburghii Rroxscaffold_2G00078740
rosa_rugosa Rorug02G0571700
rosa_samantha Rh2DG676300
rosa_wichuraiana Rw2G053400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 692
Acc65I GGTACC 1 cut(s) 671
AccB1I GGYRCC 1 cut(s) 671
AccB7I CCANNNNNTGG 1 cut(s) 649
AccBSI CCGCTC 1 cut(s) 1033
AciI CCGC 4 cut(s) 383, 396, 834, 1031
AclWI GGATC 1 cut(s) 287
AcsI RAATTY 1 cut(s) 545
AcuI CTGAAG 1 cut(s) 1062
AfaI GTAC 2 cut(s) 616, 673
AfiI CCNNNNNNNGG 1 cut(s) 649
AflIII ACRYGT 1 cut(s) 327
AgsI TTSAA 3 cut(s) 324, 605, 827
AjnI CCWGG 1 cut(s) 259
AjuI GAANNNNNNNTTGG 2 cut(s) 546, 578
AleI CACNNNNGTG 1 cut(s) 86
AluBI AGCT 8 cut(s) 23, 42, 124, 214, 524, 831, 893, 931
AluI AGCT 8 cut(s) 23, 42, 124, 214, 524, 831, 893, 931
Alw21I GWGCWC 2 cut(s) 44, 933
Alw26I GTCTC 1 cut(s) 185
AlwI GGATC 1 cut(s) 287
AlwNI CAGNNNCTG 1 cut(s) 317
AoxI GGCC 2 cut(s) 30, 448
ApeKI GCWGC 7 cut(s) 17, 20, 116, 698, 743, 831, 946
ApoI RAATTY 1 cut(s) 545
Asp718I GGTACC 1 cut(s) 671
AspLEI GCGC 1 cut(s) 1104
AspS9I GGNCC 2 cut(s) 31, 449
AsuHPI GGTGA 1 cut(s) 218
BanI GGYRCC 1 cut(s) 671
BanII GRGCYC 2 cut(s) 44, 933
Bbv12I GWGCWC 2 cut(s) 44, 933
BbvI GCAGC 7 cut(s) 29, 32, 103, 710, 730, 818, 933
BccI CCATC 4 cut(s) 233, 436, 707, 1091
BciT130I CCWGG 1 cut(s) 261
BciVI GTATCC 1 cut(s) 560
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 2 cut(s) 24, 380
BfmI CTRYAG 2 cut(s) 693, 947
BfuAI ACCTGC 1 cut(s) 692
BfuI GTATCC 1 cut(s) 560
BglII AGATCT 1 cut(s) 1053
BisI GCNGC 7 cut(s) 18, 21, 117, 699, 744, 832, 947
BlpI GCTNAGC 1 cut(s) 120
BlsI GCNGC 7 cut(s) 19, 22, 118, 700, 745, 833, 948
Bme1390I CCNGG 1 cut(s) 261
BmgT120I GGNCC 2 cut(s) 31, 449
BmiI GGNNCC 2 cut(s) 6, 673
BmrFI CCNGG 1 cut(s) 261
BmrI ACTGGG 2 cut(s) 112, 494
BmsI GCATC 1 cut(s) 211
BmuI ACTGGG 2 cut(s) 112, 494
Bpu1102I GCTNAGC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 1009
BsaXI ACNNNNNCTCC 2 cut(s) 1057, 1087
Bsc4I CCNNNNNNNGG 1 cut(s) 649
Bse1I ACTGG 3 cut(s) 107, 322, 489
Bse3DI GCAATG 2 cut(s) 126, 194
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 1009
BseGI GGATG 2 cut(s) 406, 718
BseLI CCNNNNNNNGG 1 cut(s) 649
BseMI GCAATG 2 cut(s) 126, 194
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 3 cut(s) 107, 322, 489
BseRI GAGGAG 3 cut(s) 34, 54, 203
BseXI GCAGC 7 cut(s) 29, 32, 103, 710, 730, 818, 933
BshFI GGCC 2 cut(s) 32, 450
BshNI GGYRCC 1 cut(s) 671
BsiHKAI GWGCWC 2 cut(s) 44, 933
BslI CCNNNNNNNGG 1 cut(s) 649
BsmAI GTCTC 1 cut(s) 185
BsnI GGCC 2 cut(s) 32, 450
Bsp1286I GDGCHC 2 cut(s) 44, 933
Bsp143I GATC 5 cut(s) 292, 459, 844, 917, 1053
Bsp1720I GCTNAGC 1 cut(s) 120
BspACI CCGC 4 cut(s) 383, 396, 834, 1031
BspANI GGCC 2 cut(s) 32, 450
BspCNI CTCAG 1 cut(s) 469
BspHI TCATGA 2 cut(s) 160, 1048
BspLI GGNNCC 2 cut(s) 6, 673
BspMAI CTGCAG 1 cut(s) 951
BspMI ACCTGC 1 cut(s) 692
BspPI GGATC 1 cut(s) 287
BspQI GCTCTTC 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 671
BsrBI CCGCTC 1 cut(s) 1033
BsrDI GCAATG 2 cut(s) 126, 194
BsrI ACTGG 3 cut(s) 107, 322, 489
BssECI CCNNGG 1 cut(s) 1009
BssMI GATC 5 cut(s) 292, 459, 844, 917, 1053
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 8 cut(s) 85, 562, 609, 666, 1010, 1023, 1045, 1097
Bst6I CTCTTC 2 cut(s) 32, 1074
BstDEI CTNAG 4 cut(s) 68, 120, 477, 764
BstDSI CCRYGG 1 cut(s) 1009
BstF5I GGATG 2 cut(s) 406, 718
BstHHI GCGC 1 cut(s) 1104
BstKTI GATC 5 cut(s) 295, 462, 847, 920, 1056
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 5 cut(s) 292, 459, 844, 917, 1053
BstMWI GCNNNNNNNGC 3 cut(s) 29, 521, 698
BstNI CCWGG 1 cut(s) 261
BstNSI RCATGY 3 cut(s) 62, 331, 861
BstSCI CCNGG 1 cut(s) 259
BstSFI CTRYAG 2 cut(s) 693, 947
BstV1I GCAGC 7 cut(s) 29, 32, 103, 710, 730, 818, 933
BstX2I RGATCY 2 cut(s) 292, 1053
BstYI RGATCY 2 cut(s) 292, 1053
BsuI GTATCC 1 cut(s) 560
BsuRI GGCC 2 cut(s) 32, 450
BtgI CCRYGG 1 cut(s) 1009
BtsCI GGATG 2 cut(s) 406, 718
BtsI GCAGTG 2 cut(s) 100, 318
BtsIMutI CAGTG 4 cut(s) 100, 318, 474, 1102
BveI ACCTGC 1 cut(s) 692
CaiI CAGNNNCTG 1 cut(s) 317
CciI TCATGA 2 cut(s) 160, 1048
CfoI GCGC 1 cut(s) 1104
Cfr13I GGNCC 2 cut(s) 31, 449
Csp6I GTAC 2 cut(s) 615, 672
CviAII CATG 9 cut(s) 59, 161, 328, 358, 453, 457, 724, 858, 1049
CviQI GTAC 2 cut(s) 615, 672
DdeI CTNAG 4 cut(s) 68, 120, 477, 764
DpnI GATC 5 cut(s) 294, 461, 846, 919, 1055
DpnII GATC 5 cut(s) 292, 459, 844, 917, 1053
Eam1104I CTCTTC 2 cut(s) 32, 1074
EarI CTCTTC 2 cut(s) 32, 1074
Ecl136II GAGCTC 2 cut(s) 42, 931
Eco24I GRGCYC 2 cut(s) 44, 933
Eco53kI GAGCTC 2 cut(s) 42, 931
Eco57I CTGAAG 1 cut(s) 1062
EcoICRI GAGCTC 2 cut(s) 42, 931
EcoRII CCWGG 1 cut(s) 259
EcoT22I ATGCAT 1 cut(s) 458
EcoT38I GRGCYC 2 cut(s) 44, 933
FaeI CATG 9 cut(s) 62, 164, 331, 361, 456, 460, 727, 861, 1052
FatI CATG 9 cut(s) 58, 160, 327, 357, 452, 456, 723, 857, 1048
FauI CCCGC 2 cut(s) 376, 389
Fnu4HI GCNGC 7 cut(s) 18, 21, 117, 699, 744, 832, 947
FokI GGATG 2 cut(s) 413, 725
FriOI GRGCYC 2 cut(s) 44, 933
Fsp4HI GCNGC 7 cut(s) 18, 21, 117, 699, 744, 832, 947
FspBI CTAG 2 cut(s) 24, 380
GlaI GCGC 1 cut(s) 1103
GluI GCNGC 7 cut(s) 18, 21, 117, 699, 744, 832, 947
HaeIII GGCC 2 cut(s) 32, 450
HhaI GCGC 1 cut(s) 1104
Hin1II CATG 9 cut(s) 62, 164, 331, 361, 456, 460, 727, 861, 1052
Hin6I GCGC 1 cut(s) 1102
HinP1I GCGC 1 cut(s) 1102
HincII GTYRAC 1 cut(s) 975
HindII GTYRAC 1 cut(s) 975
HindIII AAGCTT 1 cut(s) 891
HinfI GANTC 1 cut(s) 78
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 975
Hpy188III TCNNGA 4 cut(s) 161, 296, 439, 1049
Hpy8I GTNNAC 1 cut(s) 975
Hpy99I CGWCG 1 cut(s) 1091
HpyAV CCTTC 6 cut(s) 162, 440, 647, 769, 829, 1086
HpyCH4III ACNGT 8 cut(s) 85, 562, 609, 666, 1010, 1023, 1045, 1097
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 521, 698
HpyF3I CTNAG 4 cut(s) 68, 120, 477, 764
Hsp92II CATG 9 cut(s) 62, 164, 331, 361, 456, 460, 727, 861, 1052
HspAI GCGC 1 cut(s) 1102
KpnI GGTACC 1 cut(s) 675
Kzo9I GATC 5 cut(s) 292, 459, 844, 917, 1053
LguI GCTCTTC 1 cut(s) 32
LmnI GCTCC 4 cut(s) 10, 47, 67, 512
Lsp1109I GCAGC 7 cut(s) 29, 32, 103, 710, 730, 818, 933
LweI GCATC 1 cut(s) 211
MaeI CTAG 2 cut(s) 24, 380
MaeIII GTNAC 5 cut(s) 79, 313, 340, 631, 1017
MalI GATC 5 cut(s) 294, 461, 846, 919, 1055
MbiI CCGCTC 1 cut(s) 1033
MboI GATC 5 cut(s) 292, 459, 844, 917, 1053
MboII GAAGA 3 cut(s) 49, 882, 1061
MfeI CAATTG 1 cut(s) 493
MflI RGATCY 2 cut(s) 292, 1053
MhlI GDGCHC 2 cut(s) 44, 933
MluCI AATT 6 cut(s) 353, 493, 545, 747, 756, 959
MlyI GAGTC 1 cut(s) 87
MmeI TCCRAC 2 cut(s) 159, 544
Mph1103I ATGCAT 1 cut(s) 458
MseI TTAA 3 cut(s) 306, 423, 1001
MslI CAYNNNNRTG 2 cut(s) 86, 332
MspR9I CCNGG 1 cut(s) 261
MunI CAATTG 1 cut(s) 493
MvaI CCWGG 1 cut(s) 261
MwoI GCNNNNNNNGC 3 cut(s) 29, 521, 698
NdeII GATC 5 cut(s) 292, 459, 844, 917, 1053
NlaIII CATG 9 cut(s) 62, 164, 331, 361, 456, 460, 727, 861, 1052
NlaIV GGNNCC 2 cut(s) 6, 673
NmuCI GTSAC 3 cut(s) 79, 313, 631
NsiI ATGCAT 1 cut(s) 458
NspI RCATGY 3 cut(s) 62, 331, 861
OliI CACNNNNGTG 1 cut(s) 86
PagI TCATGA 2 cut(s) 160, 1048
PciI ACATGT 1 cut(s) 327
PciSI GCTCTTC 1 cut(s) 32
PcsI WCGNNNNNNNCGW 1 cut(s) 930
PflMI CCANNNNNTGG 1 cut(s) 649
PkrI GCNGC 7 cut(s) 19, 22, 118, 700, 745, 833, 948
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
PscI ACATGT 1 cut(s) 327
Psp124BI GAGCTC 2 cut(s) 44, 933
Psp6I CCWGG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 2 cut(s) 6, 673
PspPI GGNCC 2 cut(s) 31, 449
PstI CTGCAG 1 cut(s) 951
PstNI CAGNNNCTG 1 cut(s) 317
PsuI RGATCY 2 cut(s) 292, 1053
RsaI GTAC 2 cut(s) 616, 673
RsaNI GTAC 2 cut(s) 615, 672
RseI CAYNNNNRTG 2 cut(s) 86, 332
SacI GAGCTC 2 cut(s) 44, 933
SapI GCTCTTC 1 cut(s) 32
SaqAI TTAA 3 cut(s) 306, 423, 1001
SatI GCNGC 7 cut(s) 18, 21, 117, 699, 744, 832, 947
Sau3AI GATC 5 cut(s) 292, 459, 844, 917, 1053
Sau96I GGNCC 2 cut(s) 31, 449
SchI GAGTC 1 cut(s) 87
ScrFI CCNGG 1 cut(s) 261
SduI GDGCHC 2 cut(s) 44, 933
SfaNI GCATC 1 cut(s) 211
SfcI CTRYAG 2 cut(s) 693, 947
SmiMI CAYNNNNRTG 2 cut(s) 86, 332
Sse9I AATT 6 cut(s) 353, 493, 545, 747, 756, 959
SsiI CCGC 4 cut(s) 383, 396, 834, 1031
SspMI CTAG 2 cut(s) 24, 380
SstI GAGCTC 2 cut(s) 44, 933
StyD4I CCNGG 1 cut(s) 259
TaaI ACNGT 8 cut(s) 85, 562, 609, 666, 1010, 1023, 1045, 1097
TaqI TCGA 3 cut(s) 924, 933, 1089
TasI AATT 6 cut(s) 353, 493, 545, 747, 756, 959
Tru1I TTAA 3 cut(s) 306, 423, 1001
Tru9I TTAA 3 cut(s) 306, 423, 1001
TscAI CASTG 4 cut(s) 100, 318, 481, 1102
TseFI GTSAC 3 cut(s) 79, 313, 631
TseI GCWGC 7 cut(s) 17, 20, 116, 698, 743, 831, 946
Tsp45I GTSAC 3 cut(s) 79, 313, 631
TspDTI ATGAA 9 cut(s) 69, 149, 180, 255, 346, 616, 788, 789, 1037
TspRI CASTG 4 cut(s) 100, 318, 481, 1102
Van91I CCANNNNNTGG 1 cut(s) 649
XapI RAATTY 1 cut(s) 545
XceI RCATGY 3 cut(s) 62, 331, 861
XspI CTAG 2 cut(s) 24, 380
Zsp2I ATGCAT 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.