Prupe.3G296200_v2.0.a1

glycerol-3-phosphate dehydrogenase NAD(

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014375
Physical Location & Seq
Reverse (-)
26331534 .. 26334722
3189 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G296200.1

Sequence Viewer

Length: 1284 bp
ATGGCATCTCCGCCCCGACGAGTGTCTTCTCTCTTATATTCTCTCCTGCCCTCCTCTCTCGCTCCTAATCCTCTCTTCCACGCATTACCCATTTACCCTTTGCTTCTTTCTTCCGTATTCTCTCCATCTCCCTCTCGTTCTCTCTCTTCATCCATGGCTCCAGAACTTCAACAAGACGGAGAAACTCTGCCCCAAAATAACAACACTTACACTAGAGACCATGAAGCTCTACACAAAACCAAAGTCACCGTTGTGGGTAGTGGCAACTGGGGCAGTGTGGCTGCCAAACTCATTGCCTCTAACACCCTCAGGCTCTCTTCTTTCCATGATGAAGTGAGAATGTGGGTATTTGAGGAAACGTTACCGAGTGGTGAGAAGCTCACAGATGCCATCAACAGAAACAATGAAAATGTGAAATATCTGCCCGGCATAAAGCTGGGGAAAAATGTTGTTGCAGACCCAGACCTTGACAATGCAGTGAATGGTGCAAACATGTTGGTGTTTGTTACTCCACATCAATTTATGGAGGGTATATGCAAGAGACTTGTTGGGAAGATAAAAGGGGATGTGGAAGCTATTTCCCTCATCAAAGGAATGGAGGTCAAGATGGAGGGCCCGTGCATGATCTCTACACTCATCTCGGAGCAATTGGGCATTAATTGTTGTGTTCTAATGGGAGCAAACATAGCTAATGAGATTGCTTTGGAGAAATTTAGTGAAGCCACAGTTGGATACAGAGAAAACAGAGCGATTGCAGAGAAATGGGTTCATTTGTTTAGTACTCCCTACTTCATAGTCACACCTGTCCAAGACGTGGAAGGAGTAGAACTGTGTGGGACCCTGAAAAATGTTGTGGCCATAGCAGCAGGTTTTGTGGATGGATTGGAGATGGGAAATAACACAAAGGCTGCAATTATGAGAATTGGTCTAAGAGAGATGAAGGCATTTTCCAAGATGTTGTTTTCATCTGTCAAGGACAGCACCTTCTTTGAAAGTTGTGGTGTTGCTGATCTCATCACAACATGCTTGGGTGGAAGAAACAGGAAAGTTGCTGAAGCTTTTGCAAGGAGTGGAGGGAAAAGATCGTTTGATGAGCTCGAAGCAGAAATGCTGCAGGGTCAAAAATTACAGGGTGTGTCAACAGCAAAAGAGGTTTATGAAGTTCTAAGCCACCGTGGGTGGCTAGAGTTTTTCCCACTGTTTGCAACAGTTCATGAGATCTGCATTGGCTCCCTTCCTCCCTCAGCCATAGTTGAGCACTCTGAGCGCAAACCTGAACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00564 ko01110 ko04011 map00564 map01110 map04011
Pfam Domains
Protein Families
NAD_Gly3P_dh_C NAD_Gly3P_dh_N

Protein Analysis

428

Amino Acids

46.67

Weight (kDa)

6.05

Isoelectric Point (pI)

36.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014375)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40610
fragaria_vesca FvH4_6g52110 FvH4_6g52110
malus_domestica MD09G1020100.v1.1 MD17G1020500.v1.1 MD17G1020700.v1.1
prunus_persica Prupe.3G296200_v2.0.a1 Prupe.3G296200_v2.0.a1
pyrus_communis pycom111g01680 pycom17g01730
rosa_chinensis RchiOBHm_Chr2g0173621
rosa_laevigata RLG00000022206
rosa_multiflora Rmu_sc0002538.1_g000016
rosa_roxburghii Rroxscaffold_2G00078740
rosa_rugosa Rorug02G0571700
rosa_samantha Rh2DG676300
rosa_wichuraiana Rw2G053400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 857
AccB7I CCANNNNNTGG 1 cut(s) 814
AciI CCGC 1 cut(s) 11
AclI AACGTT 1 cut(s) 359
AcoI YGGCCR 1 cut(s) 855
AcsI RAATTY 1 cut(s) 710
AcuI CTGAAG 1 cut(s) 1074
AfaI GTAC 1 cut(s) 781
AfiI CCNNNNNNNGG 1 cut(s) 814
AflIII ACRYGT 1 cut(s) 492
AgsI TTSAA 2 cut(s) 170, 992
AjiI CACGTC 1 cut(s) 814
AjuI GAANNNNNNNTTGG 2 cut(s) 711, 743
AleI CACNNNNGTG 1 cut(s) 251
AluBI AGCT 7 cut(s) 227, 379, 436, 575, 689, 1058, 1096
AluI AGCT 7 cut(s) 227, 379, 436, 575, 689, 1058, 1096
Alw21I GWGCWC 2 cut(s) 1098, 1260
Alw26I GTCTC 2 cut(s) 210, 535
AoxI GGCC 2 cut(s) 613, 855
ApaI GGGCCC 1 cut(s) 617
ApeKI GCWGC 4 cut(s) 281, 863, 908, 1111
ApoI RAATTY 1 cut(s) 710
ArsI GACNNNNNNTTYG 2 cut(s) 228, 260
AseI ATTAAT 1 cut(s) 657
AspLEI GCGC 1 cut(s) 1269
AspS9I GGNCC 3 cut(s) 613, 614, 837
AsuC2I CCSGG 1 cut(s) 426
AsuHPI GGTGA 2 cut(s) 238, 383
AvaII GGWCC 1 cut(s) 837
AxyI CCTNAGG 1 cut(s) 308
BaeGI GKGCMC 1 cut(s) 617
BalI TGGCCA 1 cut(s) 857
BanII GRGCYC 2 cut(s) 617, 1098
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 1098, 1260
BbvCI CCTCAGC 1 cut(s) 1243
BbvI GCAGC 4 cut(s) 268, 875, 895, 1098
BccI CCATC 5 cut(s) 133, 398, 601, 872, 883
BciVI GTATCC 1 cut(s) 725
BcnI CCSGG 1 cut(s) 426
BcoDI GTCTC 2 cut(s) 210, 535
BfaI CTAG 3 cut(s) 213, 1184, 1282
BfmI CTRYAG 1 cut(s) 1112
BfuAI ACCTGC 1 cut(s) 857
BfuI GTATCC 1 cut(s) 725
BglII AGATCT 1 cut(s) 1218
BisI GCNGC 4 cut(s) 282, 864, 909, 1112
BlsI GCNGC 4 cut(s) 283, 865, 910, 1113
BmcAI AGTACT 1 cut(s) 781
Bme1390I CCNGG 1 cut(s) 426
Bme18I GGWCC 1 cut(s) 837
BmgBI CACGTC 1 cut(s) 814
BmgT120I GGNCC 3 cut(s) 613, 614, 837
BmiI GGNNCC 5 cut(s) 159, 615, 838, 839, 1231
BmrFI CCNGG 1 cut(s) 426
BmrI ACTGGG 1 cut(s) 277
BmsI GCATC 2 cut(s) 14, 376
BmuI ACTGGG 1 cut(s) 277
BoxI GACNNNNGTC 1 cut(s) 22
BpiI GAAGAC 1 cut(s) 18
BpmI CTGGAG 1 cut(s) 144
Bpu10I CCTNAGC 1 cut(s) 1243
BpuMI CCSGG 1 cut(s) 426
BsaI GGTCTC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 153, 1174
BsaXI ACNNNNNCTCC 2 cut(s) 602, 632
Bsc4I CCNNNNNNNGG 1 cut(s) 814
Bse1I ACTGG 1 cut(s) 272
Bse21I CCTNAGG 1 cut(s) 308
Bse3DI GCAATG 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 153, 1174
BseGI GGATG 3 cut(s) 149, 571, 883
BseLI CCNNNNNNNGG 1 cut(s) 814
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 3 cut(s) 322, 1254, 1257
BseNI ACTGG 1 cut(s) 272
BseRI GAGGAG 1 cut(s) 43
BseSI GKGCMC 1 cut(s) 617
BseXI GCAGC 4 cut(s) 268, 875, 895, 1098
BseYI CCCAGC 1 cut(s) 436
BshFI GGCC 2 cut(s) 615, 857
BsiHKAI GWGCWC 2 cut(s) 1098, 1260
BsiSI CCGG 1 cut(s) 426
BslFI GGGAC 1 cut(s) 850
BslI CCNNNNNNNGG 1 cut(s) 814
BsmAI GTCTC 2 cut(s) 210, 535
BsmFI GGGAC 1 cut(s) 850
BsnI GGCC 2 cut(s) 615, 857
Bso31I GGTCTC 1 cut(s) 210
Bsp120I GGGCCC 1 cut(s) 613
Bsp1286I GDGCHC 3 cut(s) 617, 1098, 1260
Bsp143I GATC 4 cut(s) 624, 1009, 1082, 1218
Bsp19I CCATGG 1 cut(s) 153
BspACI CCGC 1 cut(s) 11
BspANI GGCC 2 cut(s) 615, 857
BspCNI CTCAG 3 cut(s) 321, 1255, 1256
BspHI TCATGA 1 cut(s) 1213
BspLI GGNNCC 5 cut(s) 159, 615, 838, 839, 1231
BspMAI CTGCAG 1 cut(s) 1116
BspMI ACCTGC 1 cut(s) 857
BspTNI GGTCTC 1 cut(s) 210
BsrDI GCAATG 1 cut(s) 291
BsrI ACTGG 1 cut(s) 272
BssECI CCNNGG 2 cut(s) 153, 1174
BssMI GATC 4 cut(s) 624, 1009, 1082, 1218
BssT1I CCWWGG 1 cut(s) 153
Bst4CI ACNGT 6 cut(s) 250, 727, 831, 1175, 1200, 1210
Bst6I CTCTTC 3 cut(s) 80, 151, 322
BstDEI CTNAG 5 cut(s) 308, 929, 1166, 1243, 1263
BstDSI CCRYGG 2 cut(s) 153, 1174
BstF5I GGATG 3 cut(s) 149, 571, 883
BstHHI GCGC 1 cut(s) 1269
BstKTI GATC 4 cut(s) 627, 1012, 1085, 1221
BstMAI GTCTC 2 cut(s) 210, 535
BstMBI GATC 4 cut(s) 624, 1009, 1082, 1218
BstMWI GCNNNNNNNGC 4 cut(s) 270, 686, 863, 1264
BstNSI RCATGY 2 cut(s) 496, 1026
BstPAI GACNNNNGTC 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 424
BstSFI CTRYAG 1 cut(s) 1112
BstSLI GKGCMC 1 cut(s) 617
BstV1I GCAGC 4 cut(s) 268, 875, 895, 1098
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 1218
BstYI RGATCY 1 cut(s) 1218
Bsu36I CCTNAGG 1 cut(s) 308
BsuI GTATCC 1 cut(s) 725
BsuRI GGCC 2 cut(s) 615, 857
BtgI CCRYGG 2 cut(s) 153, 1174
BtrI CACGTC 1 cut(s) 814
BtsCI GGATG 3 cut(s) 149, 571, 883
BtsI GCAGTG 2 cut(s) 280, 483
BtsIMutI CAGTG 3 cut(s) 280, 483, 1196
BveI ACCTGC 1 cut(s) 857
CciI TCATGA 1 cut(s) 1213
CfoI GCGC 1 cut(s) 1269
Cfr13I GGNCC 3 cut(s) 613, 614, 837
Csp6I GTAC 1 cut(s) 780
CviAII CATG 7 cut(s) 154, 221, 326, 493, 622, 1023, 1214
CviQI GTAC 1 cut(s) 780
DdeI CTNAG 5 cut(s) 308, 929, 1166, 1243, 1263
DpnI GATC 4 cut(s) 626, 1011, 1084, 1220
DpnII GATC 4 cut(s) 624, 1009, 1082, 1218
EaeI YGGCCR 1 cut(s) 855
Eam1104I CTCTTC 3 cut(s) 80, 151, 322
EarI CTCTTC 3 cut(s) 80, 151, 322
Ecl136II GAGCTC 1 cut(s) 1096
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 2 cut(s) 617, 1098
Eco31I GGTCTC 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 837
Eco53kI GAGCTC 1 cut(s) 1096
Eco57I CTGAAG 1 cut(s) 1074
Eco81I CCTNAGG 1 cut(s) 308
EcoICRI GAGCTC 1 cut(s) 1096
EcoO109I RGGNCCY 2 cut(s) 613, 837
EcoT14I CCWWGG 1 cut(s) 153
EcoT38I GRGCYC 2 cut(s) 617, 1098
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 7 cut(s) 157, 224, 329, 496, 625, 1026, 1217
FaqI GGGAC 1 cut(s) 850
FatI CATG 7 cut(s) 153, 220, 325, 492, 621, 1022, 1213
Fnu4HI GCNGC 4 cut(s) 282, 864, 909, 1112
FokI GGATG 3 cut(s) 136, 578, 890
FriOI GRGCYC 2 cut(s) 617, 1098
Fsp4HI GCNGC 4 cut(s) 282, 864, 909, 1112
FspBI CTAG 3 cut(s) 213, 1184, 1282
GlaI GCGC 1 cut(s) 1268
GluI GCNGC 4 cut(s) 282, 864, 909, 1112
GsaI CCCAGC 1 cut(s) 440
GsuI CTGGAG 1 cut(s) 144
HaeIII GGCC 2 cut(s) 615, 857
HapII CCGG 1 cut(s) 426
HhaI GCGC 1 cut(s) 1269
Hin1II CATG 7 cut(s) 157, 224, 329, 496, 625, 1026, 1217
Hin6I GCGC 1 cut(s) 1267
HinP1I GCGC 1 cut(s) 1267
HincII GTYRAC 1 cut(s) 1140
HindII GTYRAC 1 cut(s) 1140
HindIII AAGCTT 1 cut(s) 1056
HpaII CCGG 1 cut(s) 426
HphI GGTGA 2 cut(s) 238, 383
Hpy166II GTNNAC 1 cut(s) 1140
Hpy188I TCNGA 2 cut(s) 643, 1264
Hpy188III TCNNGA 3 cut(s) 161, 604, 1214
Hpy8I GTNNAC 1 cut(s) 1140
Hpy99I CGWCG 1 cut(s) 21
HpyAV CCTTC 4 cut(s) 812, 934, 994, 1244
HpyCH4III ACNGT 6 cut(s) 250, 727, 831, 1175, 1200, 1210
HpyCH4IV ACGT 2 cut(s) 359, 813
HpyF10VI GCNNNNNNNGC 4 cut(s) 270, 686, 863, 1264
HpyF3I CTNAG 5 cut(s) 308, 929, 1166, 1243, 1263
HpySE526I ACGT 2 cut(s) 359, 813
Hsp92II CATG 7 cut(s) 157, 224, 329, 496, 625, 1026, 1217
HspAI GCGC 1 cut(s) 1267
KflI GGGWCCC 1 cut(s) 837
Kzo9I GATC 4 cut(s) 624, 1009, 1082, 1218
LmnI GCTCC 5 cut(s) 67, 163, 643, 677, 1235
Lsp1109I GCAGC 4 cut(s) 268, 875, 895, 1098
LweI GCATC 2 cut(s) 14, 376
MaeI CTAG 3 cut(s) 213, 1184, 1282
MaeII ACGT 2 cut(s) 359, 813
MaeIII GTNAC 4 cut(s) 244, 360, 505, 796
MalI GATC 4 cut(s) 626, 1011, 1084, 1220
MboI GATC 4 cut(s) 624, 1009, 1082, 1218
MboII GAAGA 7 cut(s) 18, 67, 102, 138, 309, 565, 1047
MfeI CAATTG 1 cut(s) 647
MflI RGATCY 1 cut(s) 1218
MhlI GDGCHC 3 cut(s) 617, 1098, 1260
MlsI TGGCCA 1 cut(s) 857
MluCI AATT 7 cut(s) 518, 647, 658, 710, 912, 921, 1124
MluNI TGGCCA 1 cut(s) 857
MmeI TCCRAC 1 cut(s) 709
Mox20I TGGCCA 1 cut(s) 857
MscI TGGCCA 1 cut(s) 857
MseI TTAA 1 cut(s) 657
MslI CAYNNNNRTG 2 cut(s) 251, 497
Msp20I TGGCCA 1 cut(s) 857
MspI CCGG 1 cut(s) 426
MspR9I CCNGG 1 cut(s) 426
MunI CAATTG 1 cut(s) 647
MwoI GCNNNNNNNGC 4 cut(s) 270, 686, 863, 1264
NciI CCSGG 1 cut(s) 426
NcoI CCATGG 1 cut(s) 153
NdeII GATC 4 cut(s) 624, 1009, 1082, 1218
NlaIII CATG 7 cut(s) 157, 224, 329, 496, 625, 1026, 1217
NlaIV GGNNCC 5 cut(s) 159, 615, 838, 839, 1231
NmuCI GTSAC 2 cut(s) 244, 796
NspI RCATGY 2 cut(s) 496, 1026
OliI CACNNNNGTG 1 cut(s) 251
PagI TCATGA 1 cut(s) 1213
PciI ACATGT 1 cut(s) 492
PflMI CCANNNNNTGG 1 cut(s) 814
PkrI GCNGC 4 cut(s) 283, 865, 910, 1113
PpuMI RGGWCCY 1 cut(s) 837
PscI ACATGT 1 cut(s) 492
PshAI GACNNNNGTC 1 cut(s) 22
PshBI ATTAAT 1 cut(s) 657
Psp124BI GAGCTC 1 cut(s) 1098
Psp1406I AACGTT 1 cut(s) 359
Psp5II RGGWCCY 1 cut(s) 837
PspFI CCCAGC 1 cut(s) 436
PspN4I GGNNCC 5 cut(s) 159, 615, 838, 839, 1231
PspOMI GGGCCC 1 cut(s) 613
PspPI GGNCC 3 cut(s) 613, 614, 837
PspPPI RGGWCCY 1 cut(s) 837
PstI CTGCAG 1 cut(s) 1116
PsuI RGATCY 1 cut(s) 1218
RsaI GTAC 1 cut(s) 781
RsaNI GTAC 1 cut(s) 780
RseI CAYNNNNRTG 2 cut(s) 251, 497
SacI GAGCTC 1 cut(s) 1098
SaqAI TTAA 1 cut(s) 657
SatI GCNGC 4 cut(s) 282, 864, 909, 1112
Sau3AI GATC 4 cut(s) 624, 1009, 1082, 1218
Sau96I GGNCC 3 cut(s) 613, 614, 837
ScaI AGTACT 1 cut(s) 781
ScrFI CCNGG 1 cut(s) 426
SduI GDGCHC 3 cut(s) 617, 1098, 1260
SfaNI GCATC 2 cut(s) 14, 376
SfcI CTRYAG 1 cut(s) 1112
SinI GGWCC 1 cut(s) 837
SmiMI CAYNNNNRTG 2 cut(s) 251, 497
Sse9I AATT 7 cut(s) 518, 647, 658, 710, 912, 921, 1124
SsiI CCGC 1 cut(s) 11
SspMI CTAG 3 cut(s) 213, 1184, 1282
SstI GAGCTC 1 cut(s) 1098
StyD4I CCNGG 1 cut(s) 424
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 6 cut(s) 250, 727, 831, 1175, 1200, 1210
TaiI ACGT 2 cut(s) 362, 816
TaqI TCGA 1 cut(s) 1098
TasI AATT 7 cut(s) 518, 647, 658, 710, 912, 921, 1124
TatI WGTACW 1 cut(s) 779
Tru1I TTAA 1 cut(s) 657
Tru9I TTAA 1 cut(s) 657
TscAI CASTG 3 cut(s) 280, 483, 1203
TseFI GTSAC 2 cut(s) 244, 796
TseI GCWGC 4 cut(s) 281, 863, 908, 1111
Tsp45I GTSAC 2 cut(s) 244, 796
TspGWI ACGGA 2 cut(s) 103, 192
TspRI CASTG 3 cut(s) 280, 483, 1203
Van91I CCANNNNNTGG 1 cut(s) 814
VpaK11BI GGWCC 1 cut(s) 837
VspI ATTAAT 1 cut(s) 657
XapI RAATTY 1 cut(s) 710
XceI RCATGY 2 cut(s) 496, 1026
XspI CTAG 3 cut(s) 213, 1184, 1282
ZrmI AGTACT 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.