Rorug02G0571700

glycerol-3-phosphate dehydrogenase NAD(

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014375
Physical Location & Seq
Forward (+)
69781917 .. 69785134
3218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0571700.1

Sequence Viewer

Length: 1062 bp
ATGGCGAAAACAGAGGAAGGTGGGAACAACAGAGCAACCCGGCAGCTTTTCTCAATGCCAGCGAGTAATTTTCAGGGAGATCTATTGAGGAGAATTGTTTCCGGCGACGATTTATCTCGAAAAGTCGTCGTTGACGAGCCGGTGCAAGATTCCGACGACGTTGAGCTGAGCCTGGGGCTGTCGTTGAACGGTCGGTTTGGGATGGACCCGAGAGCCAAGGCGGGGCTGCAACTCAAACGATCGTCGTCAGTCTCCGACTTCTCGCCTGCGGCGAGGACTCCGGTGAGAGAGGAGGAAGCAACGACGAGTCGTGTACCCCGGCCGTGTATGGTGCCTCTGATGAGGACTTGCTCGCTTCCGACGGAGACAGAGGATGAGTGGAGGAAGAGGAAGGAGCTGCAGAGCTTGAGGAGAATGGAGGCGAAGCGGAAGCGGTCGGAGAAGCAGCAGAGGAGTTATTCGAAGCAGCTGCATAGGGATCGGAGCCGTGAGAATTTCGATGAGGATAGGCGAGTAGAGGCCATCAATGGCGGTGGTTGTCCTCCTCTTCCGCCGCTACCGCCGGCGGAATCTCAGGGGACTATTGGGTCTCTGGGGAGTGGCTCCTCGGGGGTTACCGAGTCTGATGGCCAAGCTGTTCAAGTGGTGCACAAATGCACTGAAGCGAGAAGTGATACCAATATTGAGTCATTGCCAAAGAGTGAAAAGGAACCACTCGTCACCCCGCAGATGAATTCTACTGTTGAAAACTCTGGGCAGTTGAACGGAGGGGTCCCAATGGAAAACCACTGCAACAAATCCACAAGTCCTGCCAAGGGAACCAAGGAGATTGTGAGGAATGTGTTGGAAAATATGCCTTGTGTGTCTACTAAAGGAGATGGTCCAGACGGGAAAAGAATAGAAGGCTTTCTTTACAGGTACAAGAAAGGTGAGGAAGTGAGGATAGTATGCGTTTGTCATGGCAGCTTTCTGACTCCGGCTGAGTTTGTTAAGCACGCTGGTGGTGGTGATGTGCAACATCCTCTCAAACATATAGTGGTCAGTCCTACTCCCATTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00564 ko01110 ko04011 map00564 map01110 map04011
Pfam Domains
Protein Families
NAD_Gly3P_dh_C NAD_Gly3P_dh_N

Protein Analysis

353

Amino Acids

38.76

Weight (kDa)

8.57

Isoelectric Point (pI)

67.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EAR PF07897 50 - 86 7.6e-16 Ethylene-responsive binding factor-associated repression
NLS_NINJA_AFP PF16136 113 - 149 9.6e-21 Putative nuclear localisation signal in Ninja/AFP proteins
TDBD PF16135 314 - 347 4.6e-08 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014375)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40610
fragaria_vesca FvH4_6g52110 FvH4_6g52110
malus_domestica MD09G1020100.v1.1 MD17G1020500.v1.1 MD17G1020700.v1.1
prunus_persica Prupe.3G296200_v2.0.a1 Prupe.3G296200_v2.0.a1
pyrus_communis pycom111g01680 pycom17g01730
rosa_chinensis RchiOBHm_Chr2g0173621
rosa_laevigata RLG00000022206
rosa_multiflora Rmu_sc0002538.1_g000016
rosa_roxburghii Rroxscaffold_2G00078740
rosa_rugosa Rorug02G0571700
rosa_samantha Rh2DG676300
rosa_wichuraiana Rw2G053400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 586
AccB1I GGYRCC 1 cut(s) 331
AccI GTMKAC 1 cut(s) 866
AclWI GGATC 1 cut(s) 486
AcoI YGGCCR 2 cut(s) 320, 628
AcsI RAATTY 2 cut(s) 493, 733
AcuI CTGAAG 1 cut(s) 681
AfaI GTAC 2 cut(s) 315, 920
AfiI CCNNNNNNNGG 2 cut(s) 222, 815
AgsI TTSAA 4 cut(s) 187, 641, 746, 763
AjnI CCWGG 1 cut(s) 171
AleI CACNNNNGTG 1 cut(s) 999
AluBI AGCT 7 cut(s) 46, 166, 397, 405, 469, 635, 966
AluI AGCT 7 cut(s) 46, 166, 397, 405, 469, 635, 966
Alw21I GWGCWC 1 cut(s) 651
Alw26I GTCTC 3 cut(s) 256, 359, 594
Alw44I GTGCAC 1 cut(s) 647
AlwI GGATC 1 cut(s) 486
Ama87I CYCGRG 2 cut(s) 208, 607
AoxI GGCC 3 cut(s) 320, 519, 628
ApaLI GTGCAC 1 cut(s) 647
ApeKI GCWGC 7 cut(s) 43, 226, 397, 445, 466, 469, 963
ApoI RAATTY 2 cut(s) 493, 733
Asp700I GAANNNNTTC 2 cut(s) 97, 906
AspS9I GGNCC 3 cut(s) 205, 772, 881
AsuC2I CCSGG 2 cut(s) 40, 319
AsuHPI GGTGA 4 cut(s) 295, 712, 941, 1019
AsuII TTCGAA 1 cut(s) 461
AvaI CYCGRG 2 cut(s) 208, 607
AvaII GGWCC 3 cut(s) 205, 772, 881
BaeGI GKGCMC 1 cut(s) 651
BalI TGGCCA 1 cut(s) 630
BanI GGYRCC 1 cut(s) 331
Bbv12I GWGCWC 1 cut(s) 651
BbvI GCAGC 7 cut(s) 55, 213, 384, 456, 457, 478, 975
BccI CCATC 4 cut(s) 196, 530, 620, 872
BceAI ACGGC 2 cut(s) 307, 471
BcgI CGANNNNNNTGC 4 cut(s) 451, 461, 485, 495
BciT130I CCWGG 1 cut(s) 173
BcnI CCSGG 2 cut(s) 40, 319
BcoDI GTCTC 3 cut(s) 256, 359, 594
BfmI CTRYAG 1 cut(s) 398
BglII AGATCT 1 cut(s) 79
BisI GCNGC 9 cut(s) 44, 227, 270, 398, 446, 467, 470, 554, 964
BlpI GCTNAGC 1 cut(s) 167
BlsI GCNGC 9 cut(s) 45, 228, 271, 399, 447, 468, 471, 555, 965
Bme1390I CCNGG 3 cut(s) 40, 173, 319
Bme18I GGWCC 3 cut(s) 205, 772, 881
BmeT110I CYCGRG 2 cut(s) 208, 607
BmgT120I GGNCC 3 cut(s) 205, 772, 881
BmiI GGNNCC 8 cut(s) 207, 333, 485, 604, 711, 773, 774, 820
BmrFI CCNGG 3 cut(s) 40, 173, 319
Bpu1102I GCTNAGC 1 cut(s) 167
Bpu14I TTCGAA 1 cut(s) 461
BpuEI CTTGAG 1 cut(s) 427
BpuMI CCSGG 2 cut(s) 40, 319
BsaI GGTCTC 1 cut(s) 594
BsaJI CCNNGG 6 cut(s) 172, 216, 317, 606, 813, 822
BsaWI WCCGGW 1 cut(s) 280
Bsc4I CCNNNNNNNGG 2 cut(s) 222, 815
Bse118I RCCGGY 2 cut(s) 139, 562
Bse3DI GCAATG 1 cut(s) 689
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 6 cut(s) 172, 216, 317, 606, 813, 822
BseGI GGATG 3 cut(s) 207, 379, 1018
BseLI CCNNNNNNNGG 2 cut(s) 222, 815
BseMI GCAATG 1 cut(s) 689
BseMII CTCAG 3 cut(s) 158, 587, 972
BseRI GAGGAG 6 cut(s) 103, 305, 424, 466, 534, 595
BseSI GKGCMC 1 cut(s) 651
BseX3I CGGCCG 1 cut(s) 320
BseXI GCAGC 7 cut(s) 55, 213, 384, 456, 457, 478, 975
Bsh1285I CGRYCG 4 cut(s) 193, 242, 323, 437
BshFI GGCC 3 cut(s) 322, 521, 630
BshNI GGYRCC 1 cut(s) 331
BsiEI CGRYCG 4 cut(s) 193, 242, 323, 437
BsiHKAI GWGCWC 1 cut(s) 651
BsiHKCI CYCGRG 2 cut(s) 208, 607
BsiSI CCGG 7 cut(s) 40, 102, 140, 281, 319, 563, 977
BslFI GGGAC 2 cut(s) 592, 758
BslI CCNNNNNNNGG 2 cut(s) 222, 815
BsmAI GTCTC 3 cut(s) 256, 359, 594
BsmFI GGGAC 2 cut(s) 592, 758
BsnI GGCC 3 cut(s) 322, 521, 630
Bso31I GGTCTC 1 cut(s) 594
BsoBI CYCGRG 2 cut(s) 208, 607
Bsp119I TTCGAA 1 cut(s) 461
Bsp1286I GDGCHC 1 cut(s) 651
Bsp143I GATC 3 cut(s) 79, 239, 478
Bsp1720I GCTNAGC 1 cut(s) 167
BspANI GGCC 3 cut(s) 322, 521, 630
BspCNI CTCAG 3 cut(s) 159, 586, 973
BspLI GGNNCC 8 cut(s) 207, 333, 485, 604, 711, 773, 774, 820
BspMAI CTGCAG 1 cut(s) 402
BspPI GGATC 1 cut(s) 486
BspT104I TTCGAA 1 cut(s) 461
BspT107I GGYRCC 1 cut(s) 331
BspTNI GGTCTC 1 cut(s) 594
BsrDI GCAATG 1 cut(s) 689
BsrFI RCCGGY 2 cut(s) 139, 562
BssAI RCCGGY 2 cut(s) 139, 562
BssECI CCNNGG 6 cut(s) 172, 216, 317, 606, 813, 822
BssMI GATC 3 cut(s) 79, 239, 478
BssT1I CCWWGG 3 cut(s) 216, 813, 822
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 2 cut(s) 191, 742
Bst6I CTCTTC 2 cut(s) 380, 552
BstBI TTCGAA 1 cut(s) 461
BstC8I GCNNGC 5 cut(s) 60, 267, 353, 564, 996
BstDEI CTNAG 3 cut(s) 167, 573, 981
BstEII GGTNACC 1 cut(s) 613
BstF5I GGATG 3 cut(s) 207, 379, 1018
BstKTI GATC 3 cut(s) 82, 242, 481
BstMAI GTCTC 3 cut(s) 256, 359, 594
BstMBI GATC 3 cut(s) 79, 239, 478
BstMCI CGRYCG 4 cut(s) 193, 242, 323, 437
BstMWI GCNNNNNNNGC 1 cut(s) 559
BstNI CCWGG 1 cut(s) 173
BstPI GGTNACC 1 cut(s) 613
BstSCI CCNGG 3 cut(s) 38, 171, 317
BstSFI CTRYAG 1 cut(s) 398
BstSLI GKGCMC 1 cut(s) 651
BstV1I GCAGC 7 cut(s) 55, 213, 384, 456, 457, 478, 975
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BstZI CGGCCG 1 cut(s) 320
BsuRI GGCC 3 cut(s) 322, 521, 630
BtsCI GGATG 3 cut(s) 207, 379, 1018
BtsI GCAGTG 1 cut(s) 787
BtsIMutI CAGTG 2 cut(s) 657, 787
Cac8I GCNNGC 5 cut(s) 60, 267, 353, 564, 996
Cfr10I RCCGGY 2 cut(s) 139, 562
Cfr13I GGNCC 3 cut(s) 205, 772, 881
Csp6I GTAC 2 cut(s) 314, 919
CspCI CAANNNNNGTGG 2 cut(s) 514, 549
CviAII CATG 1 cut(s) 959
CviQI GTAC 2 cut(s) 314, 919
DdeI CTNAG 3 cut(s) 167, 573, 981
DpnI GATC 3 cut(s) 81, 241, 480
DpnII GATC 3 cut(s) 79, 239, 478
DrdI GACNNNNNNGTC 1 cut(s) 586
DseDI GACNNNNNNGTC 1 cut(s) 586
EaeI YGGCCR 2 cut(s) 320, 628
EagI CGGCCG 1 cut(s) 320
Eam1104I CTCTTC 2 cut(s) 380, 552
EarI CTCTTC 2 cut(s) 380, 552
EciI GGCGGA 2 cut(s) 540, 581
EclXI CGGCCG 1 cut(s) 320
Eco130I CCWWGG 3 cut(s) 216, 813, 822
Eco31I GGTCTC 1 cut(s) 594
Eco47I GGWCC 3 cut(s) 205, 772, 881
Eco52I CGGCCG 1 cut(s) 320
Eco57I CTGAAG 1 cut(s) 681
Eco88I CYCGRG 2 cut(s) 208, 607
Eco91I GGTNACC 1 cut(s) 613
EcoO109I RGGNCCY 1 cut(s) 772
EcoO65I GGTNACC 1 cut(s) 613
EcoRI GAATTC 1 cut(s) 733
EcoRII CCWGG 1 cut(s) 171
EcoT14I CCWWGG 3 cut(s) 216, 813, 822
ErhI CCWWGG 3 cut(s) 216, 813, 822
FaeI CATG 1 cut(s) 962
FaiI YATR 7 cut(s) 329, 474, 854, 949, 960, 1032, 1034
FalI AAGNNNNNCTT 2 cut(s) 894, 926
FaqI GGGAC 2 cut(s) 592, 758
FatI CATG 1 cut(s) 958
FauI CCCGC 2 cut(s) 214, 732
FblI GTMKAC 1 cut(s) 866
Fnu4HI GCNGC 9 cut(s) 44, 227, 270, 398, 446, 467, 470, 554, 964
FokI GGATG 3 cut(s) 214, 386, 1005
Fsp4HI GCNGC 9 cut(s) 44, 227, 270, 398, 446, 467, 470, 554, 964
GluI GCNGC 9 cut(s) 44, 227, 270, 398, 446, 467, 470, 554, 964
HaeIII GGCC 3 cut(s) 322, 521, 630
HapII CCGG 7 cut(s) 40, 102, 140, 281, 319, 563, 977
Hin1II CATG 1 cut(s) 962
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 7 cut(s) 149, 277, 307, 569, 620, 686, 973
HpaII CCGG 7 cut(s) 40, 102, 140, 281, 319, 563, 977
HphI GGTGA 4 cut(s) 295, 712, 941, 1019
Hpy166II GTNNAC 4 cut(s) 133, 314, 649, 867
Hpy188I TCNGA 8 cut(s) 154, 256, 339, 360, 439, 483, 625, 972
Hpy188III TCNNGA 2 cut(s) 117, 884
Hpy8I GTNNAC 4 cut(s) 133, 314, 649, 867
Hpy99I CGWCG 7 cut(s) 110, 131, 158, 161, 247, 307, 364
HpyAV CCTTC 3 cut(s) 11, 385, 896
HpyCH4III ACNGT 2 cut(s) 191, 742
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 8 cut(s) 145, 229, 400, 472, 649, 657, 792, 1015
HpyF10VI GCNNNNNNNGC 1 cut(s) 559
HpyF3I CTNAG 3 cut(s) 167, 573, 981
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 1 cut(s) 962
KflI GGGWCCC 1 cut(s) 772
KroI GCCGGC 1 cut(s) 562
KroNI GCCGGC 1 cut(s) 564
Kzo9I GATC 3 cut(s) 79, 239, 478
LmnI GCTCC 3 cut(s) 394, 483, 608
Lsp1109I GCAGC 7 cut(s) 55, 213, 384, 456, 457, 478, 975
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 2 cut(s) 613, 718
MalI GATC 3 cut(s) 81, 241, 480
MboI GATC 3 cut(s) 79, 239, 478
MboII GAAGA 2 cut(s) 397, 539
MflI RGATCY 1 cut(s) 79
MhlI GDGCHC 1 cut(s) 651
MlsI TGGCCA 1 cut(s) 630
MluCI AATT 4 cut(s) 67, 93, 493, 733
MluNI TGGCCA 1 cut(s) 630
MlyI GAGTC 5 cut(s) 271, 316, 629, 695, 967
MmeI TCCRAC 5 cut(s) 177, 279, 383, 417, 825
Mox20I TGGCCA 1 cut(s) 630
MreI CGCCGGCG 1 cut(s) 562
MroNI GCCGGC 1 cut(s) 562
MroXI GAANNNNTTC 2 cut(s) 97, 906
MscI TGGCCA 1 cut(s) 630
MseI TTAA 1 cut(s) 990
MslI CAYNNNNRTG 1 cut(s) 999
Msp20I TGGCCA 1 cut(s) 630
MspA1I CMGCKG 1 cut(s) 469
MspI CCGG 7 cut(s) 40, 102, 140, 281, 319, 563, 977
MspR9I CCNGG 3 cut(s) 40, 173, 319
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 559
NaeI GCCGGC 1 cut(s) 564
NciI CCSGG 2 cut(s) 40, 319
NdeII GATC 3 cut(s) 79, 239, 478
NgoMIV GCCGGC 1 cut(s) 562
NlaIII CATG 1 cut(s) 962
NlaIV GGNNCC 8 cut(s) 207, 333, 485, 604, 711, 773, 774, 820
NmuCI GTSAC 1 cut(s) 718
NspV TTCGAA 1 cut(s) 461
OliI CACNNNNGTG 1 cut(s) 999
PcsI WCGNNNNNNNCGW 2 cut(s) 132, 269
PdiI GCCGGC 1 cut(s) 564
PdmI GAANNNNTTC 2 cut(s) 97, 906
PfeI GAWTC 2 cut(s) 149, 569
PkrI GCNGC 9 cut(s) 45, 228, 271, 399, 447, 468, 471, 555, 965
Ple19I CGATCG 1 cut(s) 242
PleI GAGTC 5 cut(s) 271, 315, 628, 694, 967
PpsI GAGTC 5 cut(s) 271, 315, 628, 694, 967
PpuMI RGGWCCY 1 cut(s) 772
Psp5II RGGWCCY 1 cut(s) 772
Psp6I CCWGG 1 cut(s) 171
PspEI GGTNACC 1 cut(s) 613
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 8 cut(s) 207, 333, 485, 604, 711, 773, 774, 820
PspPI GGNCC 3 cut(s) 205, 772, 881
PspPPI RGGWCCY 1 cut(s) 772
PstI CTGCAG 1 cut(s) 402
PsuI RGATCY 1 cut(s) 79
PvuI CGATCG 1 cut(s) 242
PvuII CAGCTG 1 cut(s) 469
RsaI GTAC 2 cut(s) 315, 920
RsaNI GTAC 2 cut(s) 314, 919
RseI CAYNNNNRTG 1 cut(s) 999
SaqAI TTAA 1 cut(s) 990
SatI GCNGC 9 cut(s) 44, 227, 270, 398, 446, 467, 470, 554, 964
Sau3AI GATC 3 cut(s) 79, 239, 478
Sau96I GGNCC 3 cut(s) 205, 772, 881
SchI GAGTC 5 cut(s) 271, 316, 629, 695, 967
ScrFI CCNGG 3 cut(s) 40, 173, 319
SduI GDGCHC 1 cut(s) 651
SfcI CTRYAG 1 cut(s) 398
SfuI TTCGAA 1 cut(s) 461
SgrAI CRCCGGYG 1 cut(s) 562
SinI GGWCC 3 cut(s) 205, 772, 881
SmiMI CAYNNNNRTG 1 cut(s) 999
SmlI CTYRAG 1 cut(s) 406
SmoI CTYRAG 1 cut(s) 406
Sse9I AATT 4 cut(s) 67, 93, 493, 733
SspI AATATT 1 cut(s) 682
StyD4I CCNGG 3 cut(s) 38, 171, 317
StyI CCWWGG 3 cut(s) 216, 813, 822
TaaI ACNGT 2 cut(s) 191, 742
TaiI ACGT 1 cut(s) 162
TaqI TCGA 3 cut(s) 118, 461, 498
TasI AATT 4 cut(s) 67, 93, 493, 733
TauI GCSGC 2 cut(s) 272, 556
TfiI GAWTC 2 cut(s) 149, 569
Tru1I TTAA 1 cut(s) 990
Tru9I TTAA 1 cut(s) 990
TscAI CASTG 2 cut(s) 664, 794
TseFI GTSAC 1 cut(s) 718
TseI GCWGC 7 cut(s) 43, 226, 397, 445, 466, 469, 963
Tsp45I GTSAC 1 cut(s) 718
TspDTI ATGAA 1 cut(s) 746
TspGWI ACGGA 2 cut(s) 377, 780
TspRI CASTG 2 cut(s) 664, 794
VneI GTGCAC 1 cut(s) 647
VpaK11BI GGWCC 3 cut(s) 205, 772, 881
XapI RAATTY 2 cut(s) 493, 733
XmiI GTMKAC 1 cut(s) 866
XmnI GAANNNNTTC 2 cut(s) 97, 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.