RchiOBHm_Chr2g0173621

glycerol-3-phosphate dehydrogenase NAD(

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014375
Physical Location & Seq
Reverse (-)
86549837 .. 86552987
3151 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54082

Sequence Viewer

Length: 1266 bp
ATGGCATCTCCGCCCCGACGAGTGTCTTCTCCCCTCTTATATTCTCTCGCTTCTCTCCCTCTCTTCCAGGCATTACCCATTTACCCTTCTTCATTTCTCTCTCTCCTCCTCTCTCGCTCTCTCTCCTCTTCTTCTTCTTCCTCTTCATCAATGGCTCCACAGGAAGCAGCAGCTAGTGTGGCCCAGAAGAGCTCCTCCATTGATGAACCTGCTCCTCTAAGAAACAGAGTCACAGTTGTGGGCAGTGGCAACTGGGGTAGTGTGGCTGCTAAGCTCATTGCCTCCAACACCATTAGGCTTCCTTCTTTTCATGATGAAGTGAGAATGTGGGTGTTTGAGGAGACATTGCCAAGTGGTGAGAAGCTCACAGATGCCATCAACACAAGAAATGAAAATGTAAAATATCTGCCTGGCATAAAACTTGGGAGAAATGTTGTTGCAGACCCAGACCTTGTTAATGCAGTGACTGGTTCAAACATGTTGGTGTTTGTTACTCCACATCAATTCATGGAGGGTATATGCAAAAGACTAGCAGGGAATATAAGCGGGGATGTGGAGGCTATTTCCCTTATTAAAGGAATGGAGGTCAAGATGGAAGGCCCATGCATGATCTCTACACTCATCACTGAGCAACTGGGTATCAATTGTTGTGTTCTAATGGGAGCAAACATAGCTAATGAGATTGCTGTGGAGAAATTTAGTGAAGCCACAGTTGGATACAGAGAAAACAAAGAGGTTGCAGATAAATGGGTTCAACTGTTTAGTACCTCCTACTTCATAGTCACACCTATCCAAGATGTGGAAGGCGTAGAACTGTGTGGTACCCTGAAAAATGTTGTGGCTATAGCAGCAGGTTTTGTGGATGGCTTGGACATGGGAAATAACACAAAGGCTGCAATTATGAGAATTGGTCTAAGAGAGATGAAGGCATTTTCCAAAATGTTATTTTCATCTGTCAAGGACAGCACCTTCTTTGAAAGCTGCGGTGTTGCTGATCTCATCACAACATGCTTGGGAGGAAGAAACAGGAAAGTTGCAGAAGCTTTCGCAAAGAATGGAGGGAAAAGATCGTTCGATGAGCTTGAAGCAGAAATGCTGCAGGGTCAAAAATTACAGGGTGTGTCAACAGCAAAAGAGGTTTATGCAGTTTTAAGCCACCGTGGGTGGTTACAGTTCTTTCCGCTCTTTGCAACAGTTCATGAGATCTGCATTGGCACTCTTCCTCCATCAGCCATCGTCGAACACAGTGAGCGCACACCTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00564 ko01110 ko04011 map00564 map01110 map04011
Pfam Domains
Protein Families
NAD_Gly3P_dh_C NAD_Gly3P_dh_N

Protein Analysis

421

Amino Acids

45.47

Weight (kDa)

6.28

Isoelectric Point (pI)

39.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_Gly3P_dh_N PF01210 77 - 244 1.4e-40 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
NAD_Gly3P_dh_C PF07479 266 - 414 2.7e-45 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014375)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40610
fragaria_vesca FvH4_6g52110 FvH4_6g52110
malus_domestica MD09G1020100.v1.1 MD17G1020500.v1.1 MD17G1020700.v1.1
prunus_persica Prupe.3G296200_v2.0.a1 Prupe.3G296200_v2.0.a1
pyrus_communis pycom111g01680 pycom17g01730
rosa_chinensis RchiOBHm_Chr2g0173621
rosa_laevigata RLG00000022206
rosa_multiflora Rmu_sc0002538.1_g000016
rosa_roxburghii Rroxscaffold_2G00078740
rosa_rugosa Rorug02G0571700
rosa_samantha Rh2DG676300
rosa_wichuraiana Rw2G053400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 217, 842
Acc65I GGTACC 1 cut(s) 821
AccB1I GGYRCC 1 cut(s) 821
AccB7I CCANNNNNTGG 1 cut(s) 799
AccBSI CCGCTC 1 cut(s) 1183
AciI CCGC 4 cut(s) 11, 546, 984, 1181
AcsI RAATTY 1 cut(s) 695
AfaI GTAC 2 cut(s) 766, 823
AfiI CCNNNNNNNGG 1 cut(s) 799
AflIII ACRYGT 1 cut(s) 477
AgsI TTSAA 4 cut(s) 474, 755, 977, 1085
AjnI CCWGG 2 cut(s) 66, 409
AjuI GAANNNNNNNTTGG 2 cut(s) 696, 728
AleI CACNNNNGTG 1 cut(s) 236
AluBI AGCT 8 cut(s) 173, 192, 274, 364, 674, 981, 1043, 1081
AluI AGCT 8 cut(s) 173, 192, 274, 364, 674, 981, 1043, 1081
Alw21I GWGCWC 1 cut(s) 194
Alw26I GTCTC 1 cut(s) 335
AlwNI CAGNNNCTG 1 cut(s) 467
AoxI GGCC 2 cut(s) 180, 598
ApeKI GCWGC 7 cut(s) 167, 170, 266, 848, 893, 981, 1096
ApoI RAATTY 1 cut(s) 695
Asp718I GGTACC 1 cut(s) 821
AspLEI GCGC 1 cut(s) 1254
AspS9I GGNCC 2 cut(s) 181, 599
AsuHPI GGTGA 1 cut(s) 368
BanI GGYRCC 1 cut(s) 821
BanII GRGCYC 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 194
BbvI GCAGC 7 cut(s) 179, 182, 253, 860, 880, 968, 1083
BccI CCATC 5 cut(s) 383, 586, 857, 1234, 1241
BciT130I CCWGG 2 cut(s) 68, 411
BciVI GTATCC 1 cut(s) 710
BcoDI GTCTC 1 cut(s) 335
BfaI CTAG 2 cut(s) 174, 530
BfmI CTRYAG 2 cut(s) 843, 1097
BfuAI ACCTGC 2 cut(s) 217, 842
BfuI GTATCC 1 cut(s) 710
BglII AGATCT 1 cut(s) 1203
BisI GCNGC 7 cut(s) 168, 171, 267, 849, 894, 982, 1097
BlpI GCTNAGC 1 cut(s) 270
BlsI GCNGC 7 cut(s) 169, 172, 268, 850, 895, 983, 1098
Bme1390I CCNGG 2 cut(s) 68, 411
BmgT120I GGNCC 2 cut(s) 181, 599
BmiI GGNNCC 2 cut(s) 156, 823
BmrFI CCNGG 2 cut(s) 68, 411
BmrI ACTGGG 2 cut(s) 262, 644
BmsI GCATC 2 cut(s) 14, 361
BmuI ACTGGG 2 cut(s) 262, 644
BoxI GACNNNNGTC 1 cut(s) 22
BpiI GAAGAC 1 cut(s) 18
Bpu1102I GCTNAGC 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 1159
BsaXI ACNNNNNCTCC 2 cut(s) 1207, 1237
Bsc4I CCNNNNNNNGG 1 cut(s) 799
Bse1I ACTGG 3 cut(s) 257, 472, 639
Bse3DI GCAATG 2 cut(s) 276, 344
BseBI CCWGG 2 cut(s) 68, 411
BseDI CCNNGG 1 cut(s) 1159
BseGI GGATG 2 cut(s) 556, 868
BseLI CCNNNNNNNGG 1 cut(s) 799
BseMI GCAATG 2 cut(s) 276, 344
BseMII CTCAG 1 cut(s) 618
BseNI ACTGG 3 cut(s) 257, 472, 639
BseRI GAGGAG 6 cut(s) 95, 98, 115, 184, 204, 353
BseXI GCAGC 7 cut(s) 179, 182, 253, 860, 880, 968, 1083
BshFI GGCC 2 cut(s) 182, 600
BshNI GGYRCC 1 cut(s) 821
BsiHKAI GWGCWC 1 cut(s) 194
BslI CCNNNNNNNGG 1 cut(s) 799
BsmAI GTCTC 1 cut(s) 335
BsnI GGCC 2 cut(s) 182, 600
Bsp1286I GDGCHC 1 cut(s) 194
Bsp143I GATC 4 cut(s) 609, 994, 1067, 1203
Bsp1720I GCTNAGC 1 cut(s) 270
BspACI CCGC 4 cut(s) 11, 546, 984, 1181
BspANI GGCC 2 cut(s) 182, 600
BspCNI CTCAG 1 cut(s) 619
BspHI TCATGA 2 cut(s) 310, 1198
BspLI GGNNCC 2 cut(s) 156, 823
BspMAI CTGCAG 1 cut(s) 1101
BspMI ACCTGC 2 cut(s) 217, 842
BspQI GCTCTTC 1 cut(s) 182
BspT107I GGYRCC 1 cut(s) 821
BsrBI CCGCTC 1 cut(s) 1183
BsrDI GCAATG 2 cut(s) 276, 344
BsrI ACTGG 3 cut(s) 257, 472, 639
BssECI CCNNGG 1 cut(s) 1159
BssMI GATC 4 cut(s) 609, 994, 1067, 1203
Bst2UI CCWGG 2 cut(s) 68, 411
Bst4CI ACNGT 8 cut(s) 235, 712, 759, 816, 1160, 1173, 1195, 1247
Bst6I CTCTTC 5 cut(s) 68, 133, 148, 182, 1224
BstDEI CTNAG 4 cut(s) 218, 270, 627, 914
BstDSI CCRYGG 1 cut(s) 1159
BstF5I GGATG 2 cut(s) 556, 868
BstHHI GCGC 1 cut(s) 1254
BstKTI GATC 4 cut(s) 612, 997, 1070, 1206
BstMAI GTCTC 1 cut(s) 335
BstMBI GATC 4 cut(s) 609, 994, 1067, 1203
BstMWI GCNNNNNNNGC 3 cut(s) 179, 671, 848
BstNI CCWGG 2 cut(s) 68, 411
BstNSI RCATGY 2 cut(s) 481, 1011
BstPAI GACNNNNGTC 1 cut(s) 22
BstSCI CCNGG 2 cut(s) 66, 409
BstSFI CTRYAG 2 cut(s) 843, 1097
BstV1I GCAGC 7 cut(s) 179, 182, 253, 860, 880, 968, 1083
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 1203
BstYI RGATCY 1 cut(s) 1203
BsuI GTATCC 1 cut(s) 710
BsuRI GGCC 2 cut(s) 182, 600
BtgI CCRYGG 1 cut(s) 1159
BtsCI GGATG 2 cut(s) 556, 868
BtsI GCAGTG 2 cut(s) 250, 468
BtsIMutI CAGTG 4 cut(s) 250, 468, 624, 1252
BveI ACCTGC 2 cut(s) 217, 842
CaiI CAGNNNCTG 1 cut(s) 467
CciI TCATGA 2 cut(s) 310, 1198
CfoI GCGC 1 cut(s) 1254
Cfr13I GGNCC 2 cut(s) 181, 599
Csp6I GTAC 2 cut(s) 765, 822
CviAII CATG 8 cut(s) 311, 478, 508, 603, 607, 874, 1008, 1199
CviQI GTAC 2 cut(s) 765, 822
DdeI CTNAG 4 cut(s) 218, 270, 627, 914
DpnI GATC 4 cut(s) 611, 996, 1069, 1205
DpnII GATC 4 cut(s) 609, 994, 1067, 1203
Eam1104I CTCTTC 5 cut(s) 68, 133, 148, 182, 1224
EarI CTCTTC 5 cut(s) 68, 133, 148, 182, 1224
Ecl136II GAGCTC 1 cut(s) 192
Eco24I GRGCYC 1 cut(s) 194
Eco53kI GAGCTC 1 cut(s) 192
EcoICRI GAGCTC 1 cut(s) 192
EcoRII CCWGG 2 cut(s) 66, 409
EcoT22I ATGCAT 1 cut(s) 608
EcoT38I GRGCYC 1 cut(s) 194
FaeI CATG 8 cut(s) 314, 481, 511, 606, 610, 877, 1011, 1202
FatI CATG 8 cut(s) 310, 477, 507, 602, 606, 873, 1007, 1198
FauI CCCGC 1 cut(s) 539
Fnu4HI GCNGC 7 cut(s) 168, 171, 267, 849, 894, 982, 1097
FokI GGATG 2 cut(s) 563, 875
FriOI GRGCYC 1 cut(s) 194
Fsp4HI GCNGC 7 cut(s) 168, 171, 267, 849, 894, 982, 1097
FspBI CTAG 2 cut(s) 174, 530
GlaI GCGC 1 cut(s) 1253
GluI GCNGC 7 cut(s) 168, 171, 267, 849, 894, 982, 1097
HaeIII GGCC 2 cut(s) 182, 600
HhaI GCGC 1 cut(s) 1254
Hin1II CATG 8 cut(s) 314, 481, 511, 606, 610, 877, 1011, 1202
Hin6I GCGC 1 cut(s) 1252
HinP1I GCGC 1 cut(s) 1252
HincII GTYRAC 1 cut(s) 1125
HindII GTYRAC 1 cut(s) 1125
HindIII AAGCTT 1 cut(s) 1041
HinfI GANTC 1 cut(s) 228
HphI GGTGA 1 cut(s) 368
Hpy166II GTNNAC 1 cut(s) 1125
Hpy188III TCNNGA 3 cut(s) 311, 589, 1199
Hpy8I GTNNAC 1 cut(s) 1125
Hpy99I CGWCG 2 cut(s) 21, 1241
HpyAV CCTTC 6 cut(s) 96, 312, 590, 797, 919, 979
HpyCH4III ACNGT 8 cut(s) 235, 712, 759, 816, 1160, 1173, 1195, 1247
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 671, 848
HpyF3I CTNAG 4 cut(s) 218, 270, 627, 914
Hsp92II CATG 8 cut(s) 314, 481, 511, 606, 610, 877, 1011, 1202
HspAI GCGC 1 cut(s) 1252
KpnI GGTACC 1 cut(s) 825
Kzo9I GATC 4 cut(s) 609, 994, 1067, 1203
LguI GCTCTTC 1 cut(s) 182
LmnI GCTCC 4 cut(s) 160, 197, 217, 662
Lsp1109I GCAGC 7 cut(s) 179, 182, 253, 860, 880, 968, 1083
LweI GCATC 2 cut(s) 14, 361
MaeI CTAG 2 cut(s) 174, 530
MaeIII GTNAC 5 cut(s) 229, 463, 490, 781, 1167
MalI GATC 4 cut(s) 611, 996, 1069, 1205
MbiI CCGCTC 1 cut(s) 1183
MboI GATC 4 cut(s) 609, 994, 1067, 1203
MfeI CAATTG 1 cut(s) 643
MflI RGATCY 1 cut(s) 1203
MhlI GDGCHC 1 cut(s) 194
MluCI AATT 6 cut(s) 503, 643, 695, 897, 906, 1109
MlyI GAGTC 1 cut(s) 237
MmeI TCCRAC 2 cut(s) 309, 694
Mph1103I ATGCAT 1 cut(s) 608
MseI TTAA 3 cut(s) 456, 573, 1151
MslI CAYNNNNRTG 2 cut(s) 236, 482
MspR9I CCNGG 2 cut(s) 68, 411
MunI CAATTG 1 cut(s) 643
MvaI CCWGG 2 cut(s) 68, 411
MwoI GCNNNNNNNGC 3 cut(s) 179, 671, 848
NdeII GATC 4 cut(s) 609, 994, 1067, 1203
NlaIII CATG 8 cut(s) 314, 481, 511, 606, 610, 877, 1011, 1202
NlaIV GGNNCC 2 cut(s) 156, 823
NmuCI GTSAC 3 cut(s) 229, 463, 781
NsiI ATGCAT 1 cut(s) 608
NspI RCATGY 2 cut(s) 481, 1011
OliI CACNNNNGTG 1 cut(s) 236
PagI TCATGA 2 cut(s) 310, 1198
PciI ACATGT 1 cut(s) 477
PciSI GCTCTTC 1 cut(s) 182
PflMI CCANNNNNTGG 1 cut(s) 799
PkrI GCNGC 7 cut(s) 169, 172, 268, 850, 895, 983, 1098
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
PscI ACATGT 1 cut(s) 477
PshAI GACNNNNGTC 1 cut(s) 22
Psp124BI GAGCTC 1 cut(s) 194
Psp6I CCWGG 2 cut(s) 66, 409
PspGI CCWGG 2 cut(s) 66, 409
PspN4I GGNNCC 2 cut(s) 156, 823
PspPI GGNCC 2 cut(s) 181, 599
PstI CTGCAG 1 cut(s) 1101
PstNI CAGNNNCTG 1 cut(s) 467
PsuI RGATCY 1 cut(s) 1203
RsaI GTAC 2 cut(s) 766, 823
RsaNI GTAC 2 cut(s) 765, 822
RseI CAYNNNNRTG 2 cut(s) 236, 482
SacI GAGCTC 1 cut(s) 194
SapI GCTCTTC 1 cut(s) 182
SaqAI TTAA 3 cut(s) 456, 573, 1151
SatI GCNGC 7 cut(s) 168, 171, 267, 849, 894, 982, 1097
Sau3AI GATC 4 cut(s) 609, 994, 1067, 1203
Sau96I GGNCC 2 cut(s) 181, 599
SchI GAGTC 1 cut(s) 237
ScrFI CCNGG 2 cut(s) 68, 411
SduI GDGCHC 1 cut(s) 194
SfaNI GCATC 2 cut(s) 14, 361
SfcI CTRYAG 2 cut(s) 843, 1097
SmiMI CAYNNNNRTG 2 cut(s) 236, 482
Sse9I AATT 6 cut(s) 503, 643, 695, 897, 906, 1109
SsiI CCGC 4 cut(s) 11, 546, 984, 1181
SspMI CTAG 2 cut(s) 174, 530
SstI GAGCTC 1 cut(s) 194
StyD4I CCNGG 2 cut(s) 66, 409
TaaI ACNGT 8 cut(s) 235, 712, 759, 816, 1160, 1173, 1195, 1247
TaqI TCGA 2 cut(s) 1074, 1239
TasI AATT 6 cut(s) 503, 643, 695, 897, 906, 1109
Tru1I TTAA 3 cut(s) 456, 573, 1151
Tru9I TTAA 3 cut(s) 456, 573, 1151
TscAI CASTG 4 cut(s) 250, 468, 631, 1252
TseFI GTSAC 3 cut(s) 229, 463, 781
TseI GCWGC 7 cut(s) 167, 170, 266, 848, 893, 981, 1096
Tsp45I GTSAC 3 cut(s) 229, 463, 781
TspRI CASTG 4 cut(s) 250, 468, 631, 1252
Van91I CCANNNNNTGG 1 cut(s) 799
XapI RAATTY 1 cut(s) 695
XceI RCATGY 2 cut(s) 481, 1011
XspI CTAG 2 cut(s) 174, 530
Zsp2I ATGCAT 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.