AT5G40690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014170
Physical Location & Seq
Forward (+)
16290386 .. 16291713
1328 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G40690.1

Sequence Viewer

Length: 633 bp
ATGAAGCGTGAAGGCAAACAACACGGTATGGTGAGGACTTACCGGATTCTGCCTCCGTCGCTGAATCCAAGGCCGGAATCGAAGTTGGTCAACCCTTTGACTTCACGGCCAACCGCTGGATTATTTACCAAAGTGACATCAAAGCCGACCAATCACTCGAAATTCACCGGGAAATGTGGTCAAGCAAGGTGCCTTGACTGCCATATGCACCCGGTCACCAAATCTAAAGCCAAGACTAAAGGCTCTTCAAAGGTGAGAACAAATGATGTCACCTATAAGATGCTGACTTGGCAGGTCGCTGCCGGTGGGCCTAGACCCGGTTTGAAGCTTTCCGGGTTCTCGGCTACCGGAATACTTGATCTTATGTCTGATGATTATGGTTATGATCATGATTATGATTATGATGAAGAAAATGAAGAAGAAGAAAACAGAGGGAGTGTTGTAGAAGAAGTTGTGAATATACAGAGTAGTGATGATGGTGGTGAAACAGAAGAAGAAGGGTCAAATGATGATGATGATGATACAGATGATGATGGAAGGATGAGTTTTTGTGATGTGGGGATGATGATGATGATGGATCATGTGGAAGAATATGATGAAGGATGGTATTTGGTTGAAGAAATGATGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

23.57

Weight (kDa)

4.68

Isoelectric Point (pI)

48.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40690
fragaria_vesca FvH4_6g52330
malus_domestica MD09G1018600.v1.1 MD17G1019100.v1.1
prunus_persica Prupe.3G298500_v2.0.a1 Prupe.3G298600_v2.0.a1
pyrus_communis pycom111g01550 pycom17g01590
rosa_chinensis RchiOBHm_Chr2g0173921
rosa_laevigata RLG00000022234
rosa_multiflora Rmu_co8413491.1_g000001
rosa_rugosa Rorug02G0573800
rosa_samantha Rh2AG652700 Rh2BG663900 Rh2CG628500 Rh2DG678800
rosa_wichuraiana Rw2G053620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 283
AccB1I GGYRCC 1 cut(s) 189
AccB7I CCANNNNNTGG 1 cut(s) 116
AciI CCGC 1 cut(s) 114
AclWI GGATC 1 cut(s) 585
AcoI YGGCCR 1 cut(s) 107
AcsI RAATTY 1 cut(s) 161
AfiI CCNNNNNNNGG 2 cut(s) 116, 317
AgsI TTSAA 3 cut(s) 249, 325, 617
AluBI AGCT 1 cut(s) 328
AluI AGCT 1 cut(s) 328
AlwI GGATC 1 cut(s) 585
AoxI GGCC 3 cut(s) 71, 107, 308
ApeKI GCWGC 1 cut(s) 299
ApoI RAATTY 1 cut(s) 161
AspS9I GGNCC 1 cut(s) 308
AsuC2I CCSGG 4 cut(s) 169, 212, 318, 334
AsuHPI GGTGA 6 cut(s) 43, 157, 208, 262, 265, 494
BanI GGYRCC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 286
BccI CCATC 4 cut(s) 470, 527, 568, 597
BceAI ACGGC 1 cut(s) 122
BclI TGATCA 1 cut(s) 385
BcnI CCSGG 4 cut(s) 169, 212, 318, 334
BfaI CTAG 1 cut(s) 312
BfuAI ACCTGC 1 cut(s) 283
BisI GCNGC 1 cut(s) 300
BlsI GCNGC 1 cut(s) 301
Bme1390I CCNGG 4 cut(s) 169, 212, 318, 334
BmgT120I GGNCC 1 cut(s) 308
BmiI GGNNCC 1 cut(s) 191
BmrFI CCNGG 4 cut(s) 169, 212, 318, 334
BmsI GCATC 1 cut(s) 270
BpuMI CCSGG 4 cut(s) 169, 212, 318, 334
BsaJI CCNNGG 1 cut(s) 68
BsaWI WCCGGW 2 cut(s) 42, 347
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 317
Bse118I RCCGGY 1 cut(s) 302
BseDI CCNNGG 1 cut(s) 68
BseGI GGATG 3 cut(s) 546, 567, 608
BseLI CCNNNNNNNGG 2 cut(s) 116, 317
BseXI GCAGC 1 cut(s) 286
BshFI GGCC 3 cut(s) 73, 109, 310
BshNI GGYRCC 1 cut(s) 189
BsiSI CCGG 8 cut(s) 43, 74, 168, 212, 303, 318, 333, 348
BslI CCNNNNNNNGG 2 cut(s) 116, 317
BsnI GGCC 3 cut(s) 73, 109, 310
Bsp143I GATC 3 cut(s) 358, 385, 577
BspACI CCGC 1 cut(s) 114
BspANI GGCC 3 cut(s) 73, 109, 310
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 1 cut(s) 191
BspMI ACCTGC 1 cut(s) 283
BspPI GGATC 1 cut(s) 585
BspQI GCTCTTC 1 cut(s) 250
BspT107I GGYRCC 1 cut(s) 189
BsrFI RCCGGY 1 cut(s) 302
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 1 cut(s) 68
BssMI GATC 3 cut(s) 358, 385, 577
BssT1I CCWWGG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 26
Bst6I CTCTTC 1 cut(s) 250
BstEII GGTNACC 1 cut(s) 214
BstF5I GGATG 3 cut(s) 546, 567, 608
BstKTI GATC 3 cut(s) 361, 388, 580
BstMBI GATC 3 cut(s) 358, 385, 577
BstMWI GCNNNNNNNGC 3 cut(s) 58, 198, 289
BstPI GGTNACC 1 cut(s) 214
BstSCI CCNGG 4 cut(s) 167, 210, 316, 332
BstV1I GCAGC 1 cut(s) 286
BsuRI GGCC 3 cut(s) 73, 109, 310
BtsCI GGATG 3 cut(s) 546, 567, 608
BveI ACCTGC 1 cut(s) 283
CciI TCATGA 1 cut(s) 388
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 1 cut(s) 308
CviAII CATG 2 cut(s) 389, 581
CviJI RGCY 8 cut(s) 73, 109, 145, 230, 243, 310, 328, 344
CviKI_1 RGCY 8 cut(s) 73, 109, 145, 230, 243, 310, 328, 344
DpnI GATC 3 cut(s) 360, 387, 579
DpnII GATC 3 cut(s) 358, 385, 577
EaeI YGGCCR 1 cut(s) 107
Eam1104I CTCTTC 1 cut(s) 250
EarI CTCTTC 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 68
Eco91I GGTNACC 1 cut(s) 214
EcoO65I GGTNACC 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 68
FaeI CATG 2 cut(s) 392, 584
FatI CATG 2 cut(s) 388, 580
FauNDI CATATG 1 cut(s) 204
FbaI TGATCA 1 cut(s) 385
Fnu4HI GCNGC 1 cut(s) 300
FokI GGATG 3 cut(s) 553, 574, 615
Fsp4HI GCNGC 1 cut(s) 300
FspBI CTAG 1 cut(s) 312
GluI GCNGC 1 cut(s) 300
HaeIII GGCC 3 cut(s) 73, 109, 310
HapII CCGG 8 cut(s) 43, 74, 168, 212, 303, 318, 333, 348
Hin1II CATG 2 cut(s) 392, 584
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 3 cut(s) 46, 64, 77
HpaII CCGG 8 cut(s) 43, 74, 168, 212, 303, 318, 333, 348
HphI GGTGA 6 cut(s) 43, 157, 208, 262, 265, 494
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 370
Hpy188III TCNNGA 1 cut(s) 389
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 4 cut(s) 5, 491, 531, 593
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 1 cut(s) 208
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 198, 289
Hsp92II CATG 2 cut(s) 392, 584
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 3 cut(s) 358, 385, 577
LguI GCTCTTC 1 cut(s) 250
Lsp1109I GCAGC 1 cut(s) 286
LweI GCATC 1 cut(s) 270
MaeI CTAG 1 cut(s) 312
MaeIII GTNAC 3 cut(s) 133, 214, 268
MalI GATC 3 cut(s) 360, 387, 579
MboI GATC 3 cut(s) 358, 385, 577
MluCI AATT 1 cut(s) 161
MnlI CCTC 3 cut(s) 27, 63, 425
MseI TTAA 1 cut(s) 631
MslI CAYNNNNRTG 1 cut(s) 393
MspA1I CMGCKG 1 cut(s) 116
MspI CCGG 8 cut(s) 43, 74, 168, 212, 303, 318, 333, 348
MspR9I CCNGG 4 cut(s) 169, 212, 318, 334
MwoI GCNNNNNNNGC 3 cut(s) 58, 198, 289
NciI CCSGG 4 cut(s) 169, 212, 318, 334
NdeI CATATG 1 cut(s) 204
NdeII GATC 3 cut(s) 358, 385, 577
NlaIII CATG 2 cut(s) 392, 584
NlaIV GGNNCC 1 cut(s) 191
NmeAIII GCCGAG 1 cut(s) 320
NmuCI GTSAC 3 cut(s) 133, 214, 268
PagI TCATGA 1 cut(s) 388
PciSI GCTCTTC 1 cut(s) 250
PfeI GAWTC 3 cut(s) 46, 64, 77
PflMI CCANNNNNTGG 1 cut(s) 116
PkrI GCNGC 1 cut(s) 301
PspEI GGTNACC 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 191
PspPI GGNCC 1 cut(s) 308
RseI CAYNNNNRTG 1 cut(s) 393
SapI GCTCTTC 1 cut(s) 250
SaqAI TTAA 1 cut(s) 631
SatI GCNGC 1 cut(s) 300
Sau3AI GATC 3 cut(s) 358, 385, 577
Sau96I GGNCC 1 cut(s) 308
ScrFI CCNGG 4 cut(s) 169, 212, 318, 334
SetI ASST 5 cut(s) 191, 255, 275, 297, 330
SfaNI GCATC 1 cut(s) 270
SmiMI CAYNNNNRTG 1 cut(s) 393
Sse9I AATT 1 cut(s) 161
SsiI CCGC 1 cut(s) 114
SspMI CTAG 1 cut(s) 312
StyD4I CCNGG 4 cut(s) 167, 210, 316, 332
StyI CCWWGG 1 cut(s) 68
TaaI ACNGT 1 cut(s) 26
TaqI TCGA 2 cut(s) 80, 158
TasI AATT 1 cut(s) 161
TfiI GAWTC 3 cut(s) 46, 64, 77
Tru1I TTAA 1 cut(s) 631
Tru9I TTAA 1 cut(s) 631
TseFI GTSAC 3 cut(s) 133, 214, 268
TseI GCWGC 1 cut(s) 299
Tsp45I GTSAC 3 cut(s) 133, 214, 268
TspDTI ATGAA 4 cut(s) 17, 420, 429, 612
TspGWI ACGGA 1 cut(s) 45
Van91I CCANNNNNTGG 1 cut(s) 116
XapI RAATTY 1 cut(s) 161
XspI CTAG 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.