Rorug02G0573800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014170
Physical Location & Seq
Forward (+)
69938630 .. 69938998
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0573800.1

Sequence Viewer

Length: 369 bp
ATGAGCAAGCCACATATCCTAGCTTTTGCATATCCGGCACAAGGCCATGTATTGCCCTTGATGGAGTTCTCACAATCCTTGGCAAAACATGGCTTCAGAGTCACATTTGTGCACACAGAATATAATCACAAGCGAGTCATTAATTCCATGGTTAATGAAAGTCACATAGTGGATGATCATATTCATCTGGTTTCAATTCCAGATGGGCTAGAACCCGGGGAGGACAAGAATTCGATACGTTTGTTAACTGAAGCAATACAAGAATTCATGTCCCACAAGTTGGAGGAGCTCATAGAGAAAATCAATAAAGAGGAAGGAGAAAAAATCAGTTGCCTAATTGCTGATGAGAGTTGTGGATGGGCACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.86

Weight (kDa)

5.51

Isoelectric Point (pI)

65.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40690
fragaria_vesca FvH4_6g52330
malus_domestica MD09G1018600.v1.1 MD17G1019100.v1.1
prunus_persica Prupe.3G298500_v2.0.a1 Prupe.3G298600_v2.0.a1
pyrus_communis pycom111g01550 pycom17g01590
rosa_chinensis RchiOBHm_Chr2g0173921
rosa_laevigata RLG00000022234
rosa_multiflora Rmu_co8413491.1_g000001
rosa_rugosa Rorug02G0573800
rosa_samantha Rh2AG652700 Rh2BG663900 Rh2CG628500 Rh2DG678800
rosa_wichuraiana Rw2G053620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 280
AcsI RAATTY 2 cut(s) 229, 263
AcuI CTGAAG 2 cut(s) 79, 270
AdeI CACNNNGTG 1 cut(s) 169
AfiI CCNNNNNNNGG 2 cut(s) 41, 280
AgsI TTSAA 1 cut(s) 195
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 2 cut(s) 23, 289
AluI AGCT 2 cut(s) 23, 289
Alw21I GWGCWC 2 cut(s) 114, 291
Alw44I GTGCAC 1 cut(s) 110
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 1 cut(s) 43
ApaLI GTGCAC 1 cut(s) 110
ApoI RAATTY 2 cut(s) 229, 263
AseI ATTAAT 1 cut(s) 141
AsuC2I CCSGG 2 cut(s) 216, 217
AvaI CYCGRG 1 cut(s) 215
BaeGI GKGCMC 2 cut(s) 114, 364
BaeI ACNNNNGTAYC 2 cut(s) 227, 260
BanII GRGCYC 1 cut(s) 291
Bbv12I GWGCWC 2 cut(s) 114, 291
BccI CCATC 3 cut(s) 55, 197, 351
BclI TGATCA 1 cut(s) 175
BcnI CCSGG 2 cut(s) 216, 217
BfaI CTAG 2 cut(s) 20, 209
Bme1390I CCNGG 2 cut(s) 216, 217
BmeT110I CYCGRG 1 cut(s) 215
BmrFI CCNGG 2 cut(s) 216, 217
BpuMI CCSGG 2 cut(s) 216, 217
BsaJI CCNNGG 4 cut(s) 78, 147, 215, 216
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 280
BseDI CCNNGG 4 cut(s) 78, 147, 215, 216
BseGI GGATG 2 cut(s) 178, 362
BseLI CCNNNNNNNGG 2 cut(s) 41, 280
BseRI GAGGAG 1 cut(s) 299
BseSI GKGCMC 2 cut(s) 114, 364
BshFI GGCC 1 cut(s) 45
BsiHKAI GWGCWC 2 cut(s) 114, 291
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 2 cut(s) 35, 216
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 2 cut(s) 41, 280
BsmFI GGGAC 1 cut(s) 256
BsnI GGCC 1 cut(s) 45
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 3 cut(s) 114, 291, 364
Bsp143I GATC 1 cut(s) 175
Bsp19I CCATGG 1 cut(s) 147
BspANI GGCC 1 cut(s) 45
BssECI CCNNGG 4 cut(s) 78, 147, 215, 216
BssMI GATC 1 cut(s) 175
BssT1I CCWWGG 2 cut(s) 78, 147
Bst4CI ACNGT 1 cut(s) 366
BstC8I GCNNGC 1 cut(s) 8
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 2 cut(s) 178, 362
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstSCI CCNGG 2 cut(s) 214, 215
BstSLI GKGCMC 2 cut(s) 114, 364
BsuRI GGCC 1 cut(s) 45
BtgI CCRYGG 1 cut(s) 147
BtsCI GGATG 2 cut(s) 178, 362
BtsIMutI CAGTG 1 cut(s) 362
Cac8I GCNNGC 1 cut(s) 8
Cfr9I CCCGGG 1 cut(s) 215
CviAII CATG 4 cut(s) 47, 89, 148, 268
CviJI RGCY 6 cut(s) 10, 23, 45, 93, 208, 289
CviKI_1 RGCY 6 cut(s) 10, 23, 45, 93, 208, 289
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
DraIII CACNNNGTG 1 cut(s) 169
Ecl136II GAGCTC 1 cut(s) 289
Eco130I CCWWGG 2 cut(s) 78, 147
Eco24I GRGCYC 1 cut(s) 291
Eco53kI GAGCTC 1 cut(s) 289
Eco57I CTGAAG 2 cut(s) 79, 270
Eco88I CYCGRG 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 289
EcoRI GAATTC 2 cut(s) 229, 263
EcoT14I CCWWGG 2 cut(s) 78, 147
EcoT38I GRGCYC 1 cut(s) 291
ErhI CCWWGG 2 cut(s) 78, 147
FaeI CATG 4 cut(s) 50, 92, 151, 271
FaqI GGGAC 1 cut(s) 256
FatI CATG 4 cut(s) 46, 88, 147, 267
FbaI TGATCA 1 cut(s) 175
FokI GGATG 1 cut(s) 185
FriOI GRGCYC 1 cut(s) 291
FspBI CTAG 2 cut(s) 20, 209
HaeIII GGCC 1 cut(s) 45
HapII CCGG 2 cut(s) 35, 216
Hin1II CATG 4 cut(s) 50, 92, 151, 271
HincII GTYRAC 1 cut(s) 246
HindII GTYRAC 1 cut(s) 246
HinfI GANTC 2 cut(s) 99, 135
HpaI GTTAAC 1 cut(s) 246
HpaII CCGG 2 cut(s) 35, 216
Hpy166II GTNNAC 2 cut(s) 112, 246
Hpy188I TCNGA 1 cut(s) 98
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 2 cut(s) 112, 246
HpyAV CCTTC 1 cut(s) 308
HpyCH4III ACNGT 1 cut(s) 366
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 2 cut(s) 29, 112
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpySE526I ACGT 1 cut(s) 238
Hsp92II CATG 4 cut(s) 50, 92, 151, 271
Ksp22I TGATCA 1 cut(s) 175
KspAI GTTAAC 1 cut(s) 246
Kzo9I GATC 1 cut(s) 175
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 4 cut(s) 48, 173, 213, 229
MaeI CTAG 2 cut(s) 20, 209
MaeII ACGT 1 cut(s) 238
MaeIII GTNAC 2 cut(s) 100, 161
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MhlI GDGCHC 3 cut(s) 114, 291, 364
MluCI AATT 5 cut(s) 142, 195, 229, 263, 336
MlyI GAGTC 2 cut(s) 108, 144
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 3 cut(s) 214, 277, 304
MseI TTAA 3 cut(s) 141, 153, 245
MslI CAYNNNNRTG 1 cut(s) 107
MspI CCGG 2 cut(s) 35, 216
MspR9I CCNGG 2 cut(s) 216, 217
MwoI GCNNNNNNNGC 1 cut(s) 35
NciI CCSGG 2 cut(s) 216, 217
NcoI CCATGG 1 cut(s) 147
NdeII GATC 1 cut(s) 175
NlaIII CATG 4 cut(s) 50, 92, 151, 271
NmuCI GTSAC 2 cut(s) 100, 161
OliI CACNNNNGTG 1 cut(s) 107
PflMI CCANNNNNTGG 1 cut(s) 280
PleI GAGTC 2 cut(s) 107, 143
PpsI GAGTC 2 cut(s) 107, 143
PshBI ATTAAT 1 cut(s) 141
Psp124BI GAGCTC 1 cut(s) 291
RseI CAYNNNNRTG 1 cut(s) 107
SacI GAGCTC 1 cut(s) 291
SaqAI TTAA 3 cut(s) 141, 153, 245
Sau3AI GATC 1 cut(s) 175
SchI GAGTC 2 cut(s) 108, 144
ScrFI CCNGG 2 cut(s) 216, 217
SduI GDGCHC 3 cut(s) 114, 291, 364
SetI ASST 3 cut(s) 25, 241, 291
SmaI CCCGGG 1 cut(s) 217
SmiMI CAYNNNNRTG 1 cut(s) 107
Sse9I AATT 5 cut(s) 142, 195, 229, 263, 336
SspMI CTAG 2 cut(s) 20, 209
SstI GAGCTC 1 cut(s) 291
StyD4I CCNGG 2 cut(s) 214, 215
StyI CCWWGG 2 cut(s) 78, 147
TaaI ACNGT 1 cut(s) 366
TaiI ACGT 1 cut(s) 241
TaqI TCGA 1 cut(s) 233
TasI AATT 5 cut(s) 142, 195, 229, 263, 336
Tru1I TTAA 3 cut(s) 141, 153, 245
Tru9I TTAA 3 cut(s) 141, 153, 245
TscAI CASTG 1 cut(s) 369
TseFI GTSAC 2 cut(s) 100, 161
Tsp45I GTSAC 2 cut(s) 100, 161
TspDTI ATGAA 3 cut(s) 171, 173, 256
TspMI CCCGGG 1 cut(s) 215
TspRI CASTG 1 cut(s) 369
Van91I CCANNNNNTGG 1 cut(s) 280
VneI GTGCAC 1 cut(s) 110
VspI ATTAAT 1 cut(s) 141
XapI RAATTY 2 cut(s) 229, 263
XmaI CCCGGG 1 cut(s) 215
XspI CTAG 2 cut(s) 20, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.