MD17G1019100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0014170
Physical Location & Seq
Reverse (-)
1491655 .. 1492245
591 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1019100.v1.1.491

Sequence Viewer

Length: 591 bp
ATGAAGAGGGAGGGTCGCCAGCATGGGATGGTCCGGACATACCGGATCCTACCGGAACCGTTGAACCCAAGACCGGCAACCCGACACGTCAACAAGTTCGAGTCTCTGCCCACGGCCGGGTTGTTCACCAAGGTGCCAACCAAGCCCACCAACCACTCCAAGTTCACGGGCAAGTGCGGCAAGTCCAAGTGCACCGGGTGTCACATTCACCCGGCTTCCAAGGCCAAGGAAAAGACCAAGGGCAACCAAAAGCTCAAGTCGTCCGACGTTCTTTCCAATCATCGGTTGGTCACTTGGCGGGTCGTGGACGGGCAAACCGGCTTGAATAATCAATTGGGTTTGTCCGCCACGGAGATGTTGGATCATCTCTCTAACGATTATGAGAATGACCATGATGATGGCGATGATGGTCATGAAATCAATGGTTATGCAACTGGATATTATGATGATGGAAATGATGATCGGACGGTAGAAAATTATGTTGATCATCATCATGGTGATTATGAAGAGATGGGTTTCTTTAATGTGGAGTACGTGCTTGATCATCAAATTGAGGAAGATGATGGTTGGTGCTTAGTGCCACAAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

22.21

Weight (kDa)

5.87

Isoelectric Point (pI)

31.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40690
fragaria_vesca FvH4_6g52330
malus_domestica MD09G1018600.v1.1 MD17G1019100.v1.1
prunus_persica Prupe.3G298500_v2.0.a1 Prupe.3G298600_v2.0.a1
pyrus_communis pycom111g01550 pycom17g01590
rosa_chinensis RchiOBHm_Chr2g0173921
rosa_laevigata RLG00000022234
rosa_multiflora Rmu_co8413491.1_g000001
rosa_rugosa Rorug02G0573800
rosa_samantha Rh2AG652700 Rh2BG663900 Rh2CG628500 Rh2DG678800
rosa_wichuraiana Rw2G053620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 133
AccIII TCCGGA 1 cut(s) 33
AciI CCGC 3 cut(s) 177, 298, 345
AclWI GGATC 3 cut(s) 40, 53, 369
AcoI YGGCCR 1 cut(s) 114
AdeI CACNNNGTG 1 cut(s) 198
AfaI GTAC 1 cut(s) 533
AfiI CCNNNNNNNGG 4 cut(s) 73, 116, 117, 282
AflIII ACRYGT 1 cut(s) 85
AgsI TTSAA 2 cut(s) 64, 325
AjiI CACGTC 1 cut(s) 88
AjuI GAANNNNNNNTTGG 2 cut(s) 317, 349
AleI CACNNNNGTG 2 cut(s) 131, 586
AluBI AGCT 1 cut(s) 253
AluI AGCT 1 cut(s) 253
Alw21I GWGCWC 1 cut(s) 194
Alw26I GTCTC 1 cut(s) 108
Alw44I GTGCAC 1 cut(s) 190
AlwI GGATC 3 cut(s) 40, 53, 369
Aor13HI TCCGGA 1 cut(s) 33
AoxI GGCC 2 cut(s) 114, 222
ApaLI GTGCAC 1 cut(s) 190
AspS9I GGNCC 1 cut(s) 31
AsuC2I CCSGG 3 cut(s) 118, 196, 212
AsuHPI GGTGA 3 cut(s) 118, 200, 509
AvaII GGWCC 1 cut(s) 31
BaeGI GKGCMC 1 cut(s) 194
BamHI GGATCC 1 cut(s) 45
BanI GGYRCC 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 194
BccI CCATC 6 cut(s) 22, 392, 401, 443, 505, 557
BceAI ACGGC 1 cut(s) 129
BclI TGATCA 2 cut(s) 484, 541
BcnI CCSGG 3 cut(s) 118, 196, 212
BcoDI GTCTC 1 cut(s) 108
BisI GCNGC 1 cut(s) 178
BlsI GCNGC 1 cut(s) 179
Bme1390I CCNGG 3 cut(s) 118, 196, 212
Bme18I GGWCC 1 cut(s) 31
BmgBI CACGTC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 3 cut(s) 47, 57, 135
BmrFI CCNGG 3 cut(s) 118, 196, 212
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 3 cut(s) 118, 196, 212
BsaAI YACGTR 1 cut(s) 535
BsaBI GATNNNNATC 1 cut(s) 489
BsaJI CCNNGG 6 cut(s) 111, 129, 219, 225, 237, 348
BsaWI WCCGGW 3 cut(s) 33, 42, 52
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 116, 117, 282
Bse118I RCCGGY 2 cut(s) 73, 317
Bse1I ACTGG 1 cut(s) 439
Bse8I GATNNNNATC 1 cut(s) 489
BseAI TCCGGA 1 cut(s) 33
BseDI CCNNGG 6 cut(s) 111, 129, 219, 225, 237, 348
BseGI GGATG 1 cut(s) 33
BseJI GATNNNNATC 1 cut(s) 489
BseLI CCNNNNNNNGG 4 cut(s) 73, 116, 117, 282
BseNI ACTGG 1 cut(s) 439
BseSI GKGCMC 1 cut(s) 194
BseX3I CGGCCG 1 cut(s) 114
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 2 cut(s) 116, 224
BshNI GGYRCC 1 cut(s) 133
BsiEI CGRYCG 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 194
BsiSI CCGG 8 cut(s) 34, 43, 53, 74, 117, 195, 212, 318
BslI CCNNNNNNNGG 4 cut(s) 73, 116, 117, 282
BsmAI GTCTC 1 cut(s) 108
BsnI GGCC 2 cut(s) 116, 224
Bsp1286I GDGCHC 1 cut(s) 194
Bsp13I TCCGGA 1 cut(s) 33
Bsp143I GATC 5 cut(s) 45, 361, 460, 484, 541
BspACI CCGC 3 cut(s) 177, 298, 345
BspANI GGCC 2 cut(s) 116, 224
BspEI TCCGGA 1 cut(s) 33
BspHI TCATGA 1 cut(s) 412
BspLI GGNNCC 3 cut(s) 47, 57, 135
BspPI GGATC 3 cut(s) 40, 53, 369
BspT107I GGYRCC 1 cut(s) 133
BsrFI RCCGGY 2 cut(s) 73, 317
BsrI ACTGG 1 cut(s) 439
BssAI RCCGGY 2 cut(s) 73, 317
BssECI CCNNGG 6 cut(s) 111, 129, 219, 225, 237, 348
BssMI GATC 5 cut(s) 45, 361, 460, 484, 541
BssT1I CCWWGG 4 cut(s) 129, 219, 225, 237
Bst4CI ACNGT 2 cut(s) 60, 469
Bst6I CTCTTC 1 cut(s) 501
BstBAI YACGTR 1 cut(s) 535
BstC8I GCNNGC 1 cut(s) 20
BstDEI CTNAG 1 cut(s) 574
BstDSI CCRYGG 2 cut(s) 111, 348
BstF5I GGATG 1 cut(s) 33
BstKTI GATC 5 cut(s) 48, 364, 463, 487, 544
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 5 cut(s) 45, 361, 460, 484, 541
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 3 cut(s) 142, 177, 221
BstSCI CCNGG 3 cut(s) 116, 194, 210
BstSLI GKGCMC 1 cut(s) 194
BstX2I RGATCY 1 cut(s) 45
BstXI CCANNNNNNTGG 1 cut(s) 398
BstYI RGATCY 1 cut(s) 45
BstZI CGGCCG 1 cut(s) 114
BsuRI GGCC 2 cut(s) 116, 224
BtgI CCRYGG 2 cut(s) 111, 348
BtgZI GCGATG 1 cut(s) 417
BtrI CACGTC 1 cut(s) 88
BtsCI GGATG 1 cut(s) 33
Cac8I GCNNGC 1 cut(s) 20
CciI TCATGA 1 cut(s) 412
Cfr10I RCCGGY 2 cut(s) 73, 317
Cfr13I GGNCC 1 cut(s) 31
Csp6I GTAC 1 cut(s) 532
CviAII CATG 4 cut(s) 23, 392, 413, 494
CviJI RGCY 6 cut(s) 116, 145, 215, 224, 253, 321
CviKI_1 RGCY 6 cut(s) 116, 145, 215, 224, 253, 321
CviQI GTAC 1 cut(s) 532
DdeI CTNAG 1 cut(s) 574
DpnI GATC 5 cut(s) 47, 363, 462, 486, 543
DpnII GATC 5 cut(s) 45, 361, 460, 484, 541
DraIII CACNNNGTG 1 cut(s) 198
EaeI YGGCCR 1 cut(s) 114
EagI CGGCCG 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 501
EarI CTCTTC 1 cut(s) 501
EciI GGCGGA 1 cut(s) 334
EclXI CGGCCG 1 cut(s) 114
Eco130I CCWWGG 4 cut(s) 129, 219, 225, 237
Eco47I GGWCC 1 cut(s) 31
Eco52I CGGCCG 1 cut(s) 114
EcoT14I CCWWGG 4 cut(s) 129, 219, 225, 237
ErhI CCWWGG 4 cut(s) 129, 219, 225, 237
FaeI CATG 4 cut(s) 26, 395, 416, 497
FatI CATG 4 cut(s) 22, 391, 412, 493
FauI CCCGC 1 cut(s) 291
FbaI TGATCA 2 cut(s) 484, 541
Fnu4HI GCNGC 1 cut(s) 178
FokI GGATG 1 cut(s) 40
Fsp4HI GCNGC 1 cut(s) 178
GluI GCNGC 1 cut(s) 178
HaeIII GGCC 2 cut(s) 116, 224
HapII CCGG 8 cut(s) 34, 43, 53, 74, 117, 195, 212, 318
Hin1II CATG 4 cut(s) 26, 395, 416, 497
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 1 cut(s) 101
HpaII CCGG 8 cut(s) 34, 43, 53, 74, 117, 195, 212, 318
HphI GGTGA 3 cut(s) 118, 200, 509
Hpy166II GTNNAC 5 cut(s) 91, 126, 165, 192, 307
Hpy188I TCNGA 2 cut(s) 265, 465
Hpy188III TCNNGA 2 cut(s) 34, 413
Hpy8I GTNNAC 5 cut(s) 91, 126, 165, 192, 307
Hpy99I CGWCG 1 cut(s) 269
HpyCH4III ACNGT 2 cut(s) 60, 469
HpyCH4IV ACGT 4 cut(s) 87, 267, 534, 587
HpyCH4V TGCA 2 cut(s) 192, 431
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 177, 221
HpyF3I CTNAG 1 cut(s) 574
HpySE526I ACGT 4 cut(s) 87, 267, 534, 587
Hsp92II CATG 4 cut(s) 26, 395, 416, 497
Kpn2I TCCGGA 1 cut(s) 33
Ksp22I TGATCA 2 cut(s) 484, 541
Kzo9I GATC 5 cut(s) 45, 361, 460, 484, 541
MaeII ACGT 4 cut(s) 87, 267, 534, 587
MaeIII GTNAC 2 cut(s) 200, 289
MalI GATC 5 cut(s) 47, 363, 462, 486, 543
MboI GATC 5 cut(s) 45, 361, 460, 484, 541
MboII GAAGA 3 cut(s) 16, 518, 569
MfeI CAATTG 1 cut(s) 332
MflI RGATCY 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 194
MluCI AATT 3 cut(s) 332, 475, 549
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 2 cut(s) 288, 339
MnlI CCTC 2 cut(s) 4, 547
MroI TCCGGA 1 cut(s) 33
MseI TTAA 1 cut(s) 522
MslI CAYNNNNRTG 6 cut(s) 131, 353, 396, 492, 495, 586
MspI CCGG 8 cut(s) 34, 43, 53, 74, 117, 195, 212, 318
MspR9I CCNGG 3 cut(s) 118, 196, 212
MunI CAATTG 1 cut(s) 332
MwoI GCNNNNNNNGC 3 cut(s) 142, 177, 221
NciI CCSGG 3 cut(s) 118, 196, 212
NdeII GATC 5 cut(s) 45, 361, 460, 484, 541
NlaIII CATG 4 cut(s) 26, 395, 416, 497
NlaIV GGNNCC 3 cut(s) 47, 57, 135
NmuCI GTSAC 2 cut(s) 200, 289
OliI CACNNNNGTG 2 cut(s) 131, 586
PagI TCATGA 1 cut(s) 412
PkrI GCNGC 1 cut(s) 179
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
Ppu21I YACGTR 1 cut(s) 535
PspN4I GGNNCC 3 cut(s) 47, 57, 135
PspPI GGNCC 1 cut(s) 31
PsuI RGATCY 1 cut(s) 45
RsaI GTAC 1 cut(s) 533
RsaNI GTAC 1 cut(s) 532
RseI CAYNNNNRTG 6 cut(s) 131, 353, 396, 492, 495, 586
SaqAI TTAA 1 cut(s) 522
SatI GCNGC 1 cut(s) 178
Sau3AI GATC 5 cut(s) 45, 361, 460, 484, 541
Sau96I GGNCC 1 cut(s) 31
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 3 cut(s) 118, 196, 212
SduI GDGCHC 1 cut(s) 194
SetI ASST 6 cut(s) 90, 135, 255, 270, 537, 590
SinI GGWCC 1 cut(s) 31
SmiMI CAYNNNNRTG 6 cut(s) 131, 353, 396, 492, 495, 586
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 3 cut(s) 332, 475, 549
SsiI CCGC 3 cut(s) 177, 298, 345
StyD4I CCNGG 3 cut(s) 116, 194, 210
StyI CCWWGG 4 cut(s) 129, 219, 225, 237
TaaI ACNGT 2 cut(s) 60, 469
TaiI ACGT 4 cut(s) 90, 270, 537, 590
TaqI TCGA 1 cut(s) 99
TasI AATT 3 cut(s) 332, 475, 549
TauI GCSGC 1 cut(s) 180
Tru1I TTAA 1 cut(s) 522
Tru9I TTAA 1 cut(s) 522
TseFI GTSAC 2 cut(s) 200, 289
Tsp45I GTSAC 2 cut(s) 200, 289
TspDTI ATGAA 3 cut(s) 17, 429, 519
TspGWI ACGGA 1 cut(s) 365
VneI GTGCAC 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 31
XcmI CCANNNNNNNNNTGG 2 cut(s) 283, 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.