RchiOBHm_Chr2g0173921

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014170
Physical Location & Seq
Forward (+)
86735756 .. 86738247
2492 bp
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UTR
Exon/CDS
Intron
PRQ54109

Sequence Viewer

Length: 726 bp
ATGAGTTGTCAATCATTATTTGCTTGTGCTTGTTCCACACGAATTAGAACCTACCTAACGCCGTGCTCACCAAGCTTGCAATCCCAAAAGCATTACTATAAAACAAGAGGCACATCCACTTCTTTACCTCACAACTCAATTTTCAGCTCCCATTTAGCTCAAAACAATGAAGAGAGAGGGTCGCCAACACGGAATGGTCCGGACATATCGGGTTCTACCGACCGTATTGAACCCGAGACCCGACACGTCAACAAGTTCGACTCACTCCCCACGGCGGGGTTGTTCACCAAAGTGCCCAACAAGCCCAACAACCACTCCAAATACACGAGCAAGTGCACCAAGCCTAGGTGCACCGAGTGTCACATCCACCCGGCTAGTAAGTCCAAGGACAAGACCAAAGGGAACCAAAAGCTCAAGTCAAGCGACGTTTTGGCGAATCACAGGTTGGTCACATGGCGTGTTGTGGACAGACGATCTGGATTTAATTTTTCTGGATCGTCCGCCACGGGAATTTTAGATAATTTGTCTAGTGATTACTATGATAATAGTCGTGATAGTGACGATGAGGATGATGAAATCGATGATAATGAATCAAAGGTGGATTTCGATGATGTTGATGAAAAGGGAAGTAACGGTGAAGAGGTGATGGGTTTCTATAATGTGGATAATATGTTTGATTATCAAATTGAGGAAGATGGAGGTTGGTGCCTAGTGCCTTTAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

27.01

Weight (kDa)

5.61

Isoelectric Point (pI)

62.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40690
fragaria_vesca FvH4_6g52330
malus_domestica MD09G1018600.v1.1 MD17G1019100.v1.1
prunus_persica Prupe.3G298500_v2.0.a1 Prupe.3G298600_v2.0.a1
pyrus_communis pycom111g01550 pycom17g01590
rosa_chinensis RchiOBHm_Chr2g0173921
rosa_laevigata RLG00000022234
rosa_multiflora Rmu_co8413491.1_g000001
rosa_rugosa Rorug02G0573800
rosa_samantha Rh2AG652700 Rh2BG663900 Rh2CG628500 Rh2DG678800
rosa_wichuraiana Rw2G053620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 705
AccIII TCCGGA 1 cut(s) 199
AciI CCGC 2 cut(s) 275, 501
AclWI GGATC 1 cut(s) 502
AcsI RAATTY 1 cut(s) 510
AdeI CACNNNGTG 1 cut(s) 357
AfiI CCNNNNNNNGG 4 cut(s) 274, 275, 276, 345
AflIII ACRYGT 1 cut(s) 244
AgsI TTSAA 1 cut(s) 230
AjiI CACGTC 1 cut(s) 247
AjuI GAANNNNNNNTTGG 2 cut(s) 428, 460
AleI CACNNNNGTG 1 cut(s) 290
AluBI AGCT 4 cut(s) 75, 147, 158, 412
AluI AGCT 4 cut(s) 75, 147, 158, 412
Alw21I GWGCWC 3 cut(s) 68, 338, 353
Alw26I GTCTC 1 cut(s) 230
Alw44I GTGCAC 2 cut(s) 334, 349
AlwI GGATC 1 cut(s) 502
Ama87I CYCGRG 1 cut(s) 233
Aor13HI TCCGGA 1 cut(s) 199
ApaLI GTGCAC 2 cut(s) 334, 349
ApoI RAATTY 1 cut(s) 510
AspA2I CCTAGG 1 cut(s) 344
AspS9I GGNCC 1 cut(s) 197
AsuC2I CCSGG 1 cut(s) 371
AsuHPI GGTGA 4 cut(s) 60, 277, 647, 655
AvaI CYCGRG 1 cut(s) 233
AvaII GGWCC 1 cut(s) 197
AvrII CCTAGG 1 cut(s) 344
BaeGI GKGCMC 3 cut(s) 297, 338, 353
BanI GGYRCC 1 cut(s) 705
BauI CACGAG 1 cut(s) 325
Bbv12I GWGCWC 3 cut(s) 68, 338, 353
BccI CCATC 2 cut(s) 640, 689
BceAI ACGGC 2 cut(s) 46, 288
BcnI CCSGG 1 cut(s) 371
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 4 cut(s) 345, 375, 528, 710
BlnI CCTAGG 1 cut(s) 344
Bme1390I CCNGG 1 cut(s) 371
Bme18I GGWCC 1 cut(s) 197
BmeT110I CYCGRG 1 cut(s) 233
BmgBI CACGTC 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 2 cut(s) 404, 707
BmrFI CCNGG 1 cut(s) 371
BpuEI CTTGAG 1 cut(s) 398
BpuMI CCSGG 1 cut(s) 371
Bsa29I ATCGAT 1 cut(s) 579
BsaI GGTCTC 1 cut(s) 230
BsaJI CCNNGG 4 cut(s) 270, 344, 384, 504
BsaWI WCCGGW 1 cut(s) 199
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 4 cut(s) 274, 275, 276, 345
BseAI TCCGGA 1 cut(s) 199
BseCI ATCGAT 1 cut(s) 579
BseDI CCNNGG 4 cut(s) 270, 344, 384, 504
BseGI GGATG 3 cut(s) 113, 363, 574
BseLI CCNNNNNNNGG 4 cut(s) 274, 275, 276, 345
BseSI GKGCMC 3 cut(s) 297, 338, 353
Bsh1285I CGRYCG 1 cut(s) 223
BshNI GGYRCC 1 cut(s) 705
BshVI ATCGAT 1 cut(s) 579
BsiEI CGRYCG 1 cut(s) 223
BsiHKAI GWGCWC 3 cut(s) 68, 338, 353
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 2 cut(s) 200, 371
BslI CCNNNNNNNGG 4 cut(s) 274, 275, 276, 345
BsmAI GTCTC 1 cut(s) 230
Bso31I GGTCTC 1 cut(s) 230
BsoBI CYCGRG 1 cut(s) 233
Bsp1286I GDGCHC 4 cut(s) 68, 297, 338, 353
Bsp13I TCCGGA 1 cut(s) 199
Bsp143I GATC 2 cut(s) 473, 494
BspACI CCGC 2 cut(s) 275, 501
BspDI ATCGAT 1 cut(s) 579
BspEI TCCGGA 1 cut(s) 199
BspLI GGNNCC 2 cut(s) 404, 707
BspPI GGATC 1 cut(s) 502
BspT107I GGYRCC 1 cut(s) 705
BspTNI GGTCTC 1 cut(s) 230
BssECI CCNNGG 4 cut(s) 270, 344, 384, 504
BssMI GATC 2 cut(s) 473, 494
BssSI CACGAG 1 cut(s) 325
BssT1I CCWWGG 2 cut(s) 344, 384
Bst2BI CACGAG 1 cut(s) 325
Bst4CI ACNGT 2 cut(s) 224, 635
Bst6I CTCTTC 2 cut(s) 165, 633
BstC8I GCNNGC 1 cut(s) 77
BstDSI CCRYGG 2 cut(s) 270, 504
BstF5I GGATG 3 cut(s) 113, 363, 574
BstKTI GATC 2 cut(s) 476, 497
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 2 cut(s) 473, 494
BstMCI CGRYCG 1 cut(s) 223
BstMWI GCNNNNNNNGC 2 cut(s) 72, 301
BstSCI CCNGG 1 cut(s) 369
BstSLI GKGCMC 3 cut(s) 297, 338, 353
Bsu15I ATCGAT 1 cut(s) 579
BsuTUI ATCGAT 1 cut(s) 579
BtgI CCRYGG 2 cut(s) 270, 504
BtrI CACGTC 1 cut(s) 247
BtsCI GGATG 3 cut(s) 113, 363, 574
Cac8I GCNNGC 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 197
ClaI ATCGAT 1 cut(s) 579
CviAII CATG 1 cut(s) 453
CviJI RGCY 7 cut(s) 75, 147, 158, 304, 343, 374, 412
CviKI_1 RGCY 7 cut(s) 75, 147, 158, 304, 343, 374, 412
DpnI GATC 2 cut(s) 475, 496
DpnII GATC 2 cut(s) 473, 494
DraIII CACNNNGTG 1 cut(s) 357
Eam1104I CTCTTC 2 cut(s) 165, 633
EarI CTCTTC 2 cut(s) 165, 633
EciI GGCGGA 1 cut(s) 490
Eco130I CCWWGG 2 cut(s) 344, 384
Eco31I GGTCTC 1 cut(s) 230
Eco47I GGWCC 1 cut(s) 197
Eco88I CYCGRG 1 cut(s) 233
EcoT14I CCWWGG 2 cut(s) 344, 384
ErhI CCWWGG 2 cut(s) 344, 384
FaeI CATG 1 cut(s) 456
FaiI YATR 6 cut(s) 99, 206, 454, 540, 657, 671
FatI CATG 1 cut(s) 452
FauI CCCGC 1 cut(s) 268
FokI GGATG 3 cut(s) 100, 350, 581
FspBI CTAG 4 cut(s) 345, 375, 528, 710
HapII CCGG 2 cut(s) 200, 371
Hin1II CATG 1 cut(s) 456
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HindIII AAGCTT 1 cut(s) 73
HinfI GANTC 3 cut(s) 260, 436, 590
HpaII CCGG 2 cut(s) 200, 371
HphI GGTGA 4 cut(s) 60, 277, 647, 655
Hpy166II GTNNAC 5 cut(s) 250, 285, 336, 351, 466
Hpy188III TCNNGA 4 cut(s) 200, 477, 492, 551
Hpy8I GTNNAC 5 cut(s) 250, 285, 336, 351, 466
Hpy99I CGWCG 1 cut(s) 428
HpyCH4III ACNGT 2 cut(s) 224, 635
HpyCH4IV ACGT 2 cut(s) 246, 426
HpyCH4V TGCA 3 cut(s) 79, 336, 351
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 301
HpySE526I ACGT 2 cut(s) 246, 426
Hsp92II CATG 1 cut(s) 456
Kpn2I TCCGGA 1 cut(s) 199
Kzo9I GATC 2 cut(s) 473, 494
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 5 cut(s) 213, 384, 427, 462, 477
MaeI CTAG 4 cut(s) 345, 375, 528, 710
MaeII ACGT 2 cut(s) 246, 426
MaeIII GTNAC 4 cut(s) 359, 448, 557, 629
MalI GATC 2 cut(s) 475, 496
MboI GATC 2 cut(s) 473, 494
MboII GAAGA 3 cut(s) 182, 650, 704
MhlI GDGCHC 4 cut(s) 68, 297, 338, 353
MluCI AATT 6 cut(s) 42, 138, 484, 510, 520, 684
MlyI GAGTC 1 cut(s) 254
MnlI CCTC 7 cut(s) 101, 138, 170, 559, 634, 682, 692
MroI TCCGGA 1 cut(s) 199
MseI TTAA 2 cut(s) 483, 719
MslI CAYNNNNRTG 1 cut(s) 290
MspI CCGG 2 cut(s) 200, 371
MspR9I CCNGG 1 cut(s) 371
MwoI GCNNNNNNNGC 2 cut(s) 72, 301
NciI CCSGG 1 cut(s) 371
NdeII GATC 2 cut(s) 473, 494
NlaIII CATG 1 cut(s) 456
NlaIV GGNNCC 2 cut(s) 404, 707
NmuCI GTSAC 3 cut(s) 359, 448, 557
OliI CACNNNNGTG 1 cut(s) 290
PfeI GAWTC 2 cut(s) 436, 590
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
PspN4I GGNNCC 2 cut(s) 404, 707
PspPI GGNCC 1 cut(s) 197
RseI CAYNNNNRTG 1 cut(s) 290
SaqAI TTAA 2 cut(s) 483, 719
Sau3AI GATC 2 cut(s) 473, 494
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 1 cut(s) 371
SduI GDGCHC 4 cut(s) 68, 297, 338, 353
SinI GGWCC 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 290
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
Sse9I AATT 6 cut(s) 42, 138, 484, 510, 520, 684
SsiI CCGC 2 cut(s) 275, 501
SspMI CTAG 4 cut(s) 345, 375, 528, 710
StyD4I CCNGG 1 cut(s) 369
StyI CCWWGG 2 cut(s) 344, 384
TaaI ACNGT 2 cut(s) 224, 635
TaiI ACGT 2 cut(s) 249, 429
TaqI TCGA 3 cut(s) 258, 579, 606
TasI AATT 6 cut(s) 42, 138, 484, 510, 520, 684
TfiI GAWTC 2 cut(s) 436, 590
Tru1I TTAA 2 cut(s) 483, 719
Tru9I TTAA 2 cut(s) 483, 719
TseFI GTSAC 3 cut(s) 359, 448, 557
Tsp45I GTSAC 3 cut(s) 359, 448, 557
TspDTI ATGAA 4 cut(s) 183, 588, 603, 633
TspGWI ACGGA 1 cut(s) 205
VneI GTGCAC 2 cut(s) 334, 349
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 1 cut(s) 510
XmaJI CCTAGG 1 cut(s) 344
XspI CTAG 4 cut(s) 345, 375, 528, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.