pycom17g01590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0014170
Physical Location & Seq
Reverse (-)
1048554 .. 1049288
735 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g01590.1

Sequence Viewer

Length: 735 bp
ATGGCTTGGCCAACACGAAATATCTACCCACCAAACGACACCGTGCTTCCCAAGTTTTCATTTGCACTATATAACCAGAAGCAAAACATCAACACCTCCACCATCTTTTTCATTAGCCCACAACCCAATTTGTCAACTATGAAGAGAGAGGGTCGCCAACATGGAATGGTCCGGACATACCGGATCCTACCGGAACCGTTGAACCCAAGACCGGCAACCCGACACGTCAACAAGTTCGAGTCTCCACCCACGGCCGGGTTGTTCACCAAGGTGCCAACCAAGCCCACCAACCACTCCAAGTTCACGGGCAAGTGCGGCAAGTCCAAGTGCACCGAGTGTCACATTCACCCGGCTTCCAAGGCCAAGGAAAAGACCAAGGGCAACCAACAGCTCAAGTCGTCCGACGTCGTTTCCAACCATCGGTTGGTCACTTGGCGGGTCGTGGACGGGCAAACCGGCTTGAATAATCAATTGGGTTTGTCCGCCAAGGAGATGTTGGATCATCTCTCTAACGATTATGAGAATGACCATGATGATGGCGATGATGGTCATGAAATCAATGGTTATGCAATTGGATACTATGTTGATGGAAATGATGATCGAACGGTGGAAAATTATGTTGATGATGTTGATCATCATGGTGATTATGAAGAGATGGGTTTCTTTAATGTGGACTACGTGGTTGATCATCAAATTAAGGAAGATGATGGTTGGTGCTTAGTGCCACAAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

27.74

Weight (kDa)

6.04

Isoelectric Point (pI)

35.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40690
fragaria_vesca FvH4_6g52330
malus_domestica MD09G1018600.v1.1 MD17G1019100.v1.1
prunus_persica Prupe.3G298500_v2.0.a1 Prupe.3G298600_v2.0.a1
pyrus_communis pycom111g01550 pycom17g01590
rosa_chinensis RchiOBHm_Chr2g0173921
rosa_laevigata RLG00000022234
rosa_multiflora Rmu_co8413491.1_g000001
rosa_rugosa Rorug02G0573800
rosa_samantha Rh2AG652700 Rh2BG663900 Rh2CG628500 Rh2DG678800
rosa_wichuraiana Rw2G053620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 408
AccB1I GGYRCC 1 cut(s) 271
AccB7I CCANNNNNTGG 1 cut(s) 424
AccIII TCCGGA 1 cut(s) 171
AciI CCGC 3 cut(s) 315, 436, 483
AclWI GGATC 3 cut(s) 178, 191, 507
AcoI YGGCCR 2 cut(s) 8, 252
AcyI GRCGYC 1 cut(s) 405
AdeI CACNNNGTG 1 cut(s) 336
AfiI CCNNNNNNNGG 5 cut(s) 211, 254, 255, 420, 424
AflIII ACRYGT 1 cut(s) 223
AgsI TTSAA 2 cut(s) 202, 463
AjiI CACGTC 1 cut(s) 226
AjuI GAANNNNNNNTTGG 2 cut(s) 455, 487
AleI CACNNNNGTG 2 cut(s) 269, 730
AluBI AGCT 1 cut(s) 391
AluI AGCT 1 cut(s) 391
Alw21I GWGCWC 1 cut(s) 332
Alw26I GTCTC 1 cut(s) 246
Alw44I GTGCAC 1 cut(s) 328
AlwI GGATC 3 cut(s) 178, 191, 507
Aor13HI TCCGGA 1 cut(s) 171
AoxI GGCC 3 cut(s) 8, 252, 360
ApaLI GTGCAC 1 cut(s) 328
AspS9I GGNCC 1 cut(s) 169
AsuC2I CCSGG 2 cut(s) 256, 350
AsuHPI GGTGA 3 cut(s) 256, 338, 653
AvaII GGWCC 1 cut(s) 169
BaeGI GKGCMC 1 cut(s) 332
BalI TGGCCA 1 cut(s) 10
BamHI GGATCC 1 cut(s) 183
BanI GGYRCC 1 cut(s) 271
Bbv12I GWGCWC 1 cut(s) 332
BccI CCATC 7 cut(s) 110, 426, 530, 539, 581, 649, 701
BceAI ACGGC 1 cut(s) 267
BciVI GTATCC 1 cut(s) 569
BclI TGATCA 2 cut(s) 631, 685
BcnI CCSGG 2 cut(s) 256, 350
BcoDI GTCTC 1 cut(s) 246
BfuI GTATCC 1 cut(s) 569
BisI GCNGC 1 cut(s) 316
BlsI GCNGC 1 cut(s) 317
Bme1390I CCNGG 2 cut(s) 256, 350
Bme18I GGWCC 1 cut(s) 169
BmgBI CACGTC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 3 cut(s) 185, 195, 273
BmrFI CCNGG 2 cut(s) 256, 350
BpuEI CTTGAG 1 cut(s) 377
BpuMI CCSGG 2 cut(s) 256, 350
BsaAI YACGTR 1 cut(s) 679
BsaBI GATNNNNATC 1 cut(s) 630
BsaHI GRCGYC 1 cut(s) 405
BsaJI CCNNGG 6 cut(s) 249, 267, 357, 363, 375, 486
BsaWI WCCGGW 3 cut(s) 171, 180, 190
Bsc4I CCNNNNNNNGG 5 cut(s) 211, 254, 255, 420, 424
Bse118I RCCGGY 2 cut(s) 211, 455
Bse8I GATNNNNATC 1 cut(s) 630
BseAI TCCGGA 1 cut(s) 171
BseDI CCNNGG 6 cut(s) 249, 267, 357, 363, 375, 486
BseJI GATNNNNATC 1 cut(s) 630
BseLI CCNNNNNNNGG 5 cut(s) 211, 254, 255, 420, 424
BseSI GKGCMC 1 cut(s) 332
BseX3I CGGCCG 1 cut(s) 252
Bsh1285I CGRYCG 1 cut(s) 255
BshFI GGCC 3 cut(s) 10, 254, 362
BshNI GGYRCC 1 cut(s) 271
BsiEI CGRYCG 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 332
BsiSI CCGG 7 cut(s) 172, 181, 191, 212, 255, 350, 456
BslI CCNNNNNNNGG 5 cut(s) 211, 254, 255, 420, 424
BsmAI GTCTC 1 cut(s) 246
BsnI GGCC 3 cut(s) 10, 254, 362
Bsp1286I GDGCHC 1 cut(s) 332
Bsp13I TCCGGA 1 cut(s) 171
Bsp143I GATC 5 cut(s) 183, 499, 598, 631, 685
BspACI CCGC 3 cut(s) 315, 436, 483
BspANI GGCC 3 cut(s) 10, 254, 362
BspEI TCCGGA 1 cut(s) 171
BspHI TCATGA 1 cut(s) 550
BspLI GGNNCC 3 cut(s) 185, 195, 273
BspPI GGATC 3 cut(s) 178, 191, 507
BspT107I GGYRCC 1 cut(s) 271
BsrFI RCCGGY 2 cut(s) 211, 455
BssAI RCCGGY 2 cut(s) 211, 455
BssECI CCNNGG 6 cut(s) 249, 267, 357, 363, 375, 486
BssMI GATC 5 cut(s) 183, 499, 598, 631, 685
BssNI GRCGYC 1 cut(s) 405
BssT1I CCWWGG 5 cut(s) 267, 357, 363, 375, 486
Bst4CI ACNGT 3 cut(s) 43, 198, 607
Bst6I CTCTTC 2 cut(s) 137, 645
BstACI GRCGYC 1 cut(s) 405
BstBAI YACGTR 1 cut(s) 679
BstDEI CTNAG 1 cut(s) 718
BstDSI CCRYGG 1 cut(s) 249
BstKTI GATC 5 cut(s) 186, 502, 601, 634, 688
BstMAI GTCTC 1 cut(s) 246
BstMBI GATC 5 cut(s) 183, 499, 598, 631, 685
BstMCI CGRYCG 1 cut(s) 255
BstMWI GCNNNNNNNGC 3 cut(s) 280, 315, 359
BstSCI CCNGG 2 cut(s) 254, 348
BstSLI GKGCMC 1 cut(s) 332
BstX2I RGATCY 1 cut(s) 183
BstXI CCANNNNNNTGG 1 cut(s) 536
BstYI RGATCY 1 cut(s) 183
BstZI CGGCCG 1 cut(s) 252
BsuI GTATCC 1 cut(s) 569
BsuRI GGCC 3 cut(s) 10, 254, 362
BtgI CCRYGG 1 cut(s) 249
BtgZI GCGATG 1 cut(s) 555
BtrI CACGTC 1 cut(s) 226
CciI TCATGA 1 cut(s) 550
Cfr10I RCCGGY 2 cut(s) 211, 455
Cfr13I GGNCC 1 cut(s) 169
CviAII CATG 4 cut(s) 161, 530, 551, 638
CviJI RGCY 9 cut(s) 5, 10, 117, 254, 283, 353, 362, 391, 459
CviKI_1 RGCY 9 cut(s) 5, 10, 117, 254, 283, 353, 362, 391, 459
DdeI CTNAG 1 cut(s) 718
DpnI GATC 5 cut(s) 185, 501, 600, 633, 687
DpnII GATC 5 cut(s) 183, 499, 598, 631, 685
DraIII CACNNNGTG 1 cut(s) 336
EaeI YGGCCR 2 cut(s) 8, 252
EagI CGGCCG 1 cut(s) 252
Eam1104I CTCTTC 2 cut(s) 137, 645
EarI CTCTTC 2 cut(s) 137, 645
EciI GGCGGA 1 cut(s) 472
EclXI CGGCCG 1 cut(s) 252
Eco130I CCWWGG 5 cut(s) 267, 357, 363, 375, 486
Eco47I GGWCC 1 cut(s) 169
Eco52I CGGCCG 1 cut(s) 252
EcoT14I CCWWGG 5 cut(s) 267, 357, 363, 375, 486
ErhI CCWWGG 5 cut(s) 267, 357, 363, 375, 486
FaeI CATG 4 cut(s) 164, 533, 554, 641
FatI CATG 4 cut(s) 160, 529, 550, 637
FauI CCCGC 1 cut(s) 429
FbaI TGATCA 2 cut(s) 631, 685
Fnu4HI GCNGC 1 cut(s) 316
Fsp4HI GCNGC 1 cut(s) 316
GluI GCNGC 1 cut(s) 316
HaeIII GGCC 3 cut(s) 10, 254, 362
HapII CCGG 7 cut(s) 172, 181, 191, 212, 255, 350, 456
Hin1I GRCGYC 1 cut(s) 405
Hin1II CATG 4 cut(s) 164, 533, 554, 641
HincII GTYRAC 2 cut(s) 135, 229
HindII GTYRAC 2 cut(s) 135, 229
HinfI GANTC 1 cut(s) 239
HpaII CCGG 7 cut(s) 172, 181, 191, 212, 255, 350, 456
HphI GGTGA 3 cut(s) 256, 338, 653
Hpy166II GTNNAC 7 cut(s) 135, 229, 264, 303, 330, 445, 673
Hpy188I TCNGA 1 cut(s) 403
Hpy188III TCNNGA 2 cut(s) 172, 551
Hpy8I GTNNAC 7 cut(s) 135, 229, 264, 303, 330, 445, 673
Hpy99I CGWCG 2 cut(s) 407, 410
HpyCH4III ACNGT 3 cut(s) 43, 198, 607
HpyCH4IV ACGT 4 cut(s) 225, 405, 678, 731
HpyCH4V TGCA 3 cut(s) 65, 330, 569
HpyF10VI GCNNNNNNNGC 3 cut(s) 280, 315, 359
HpyF3I CTNAG 1 cut(s) 718
HpySE526I ACGT 4 cut(s) 225, 405, 678, 731
Hsp92I GRCGYC 1 cut(s) 405
Hsp92II CATG 4 cut(s) 164, 533, 554, 641
Kpn2I TCCGGA 1 cut(s) 171
Ksp22I TGATCA 2 cut(s) 631, 685
Kzo9I GATC 5 cut(s) 183, 499, 598, 631, 685
LpnPI CCDG 8 cut(s) 89, 185, 194, 204, 225, 268, 363, 469
MaeII ACGT 4 cut(s) 225, 405, 678, 731
MaeIII GTNAC 2 cut(s) 338, 427
MalI GATC 5 cut(s) 185, 501, 600, 633, 687
MboI GATC 5 cut(s) 183, 499, 598, 631, 685
MboII GAAGA 3 cut(s) 154, 662, 713
MfeI CAATTG 2 cut(s) 470, 570
MflI RGATCY 1 cut(s) 183
MhlI GDGCHC 1 cut(s) 332
MlsI TGGCCA 1 cut(s) 10
MluCI AATT 5 cut(s) 127, 470, 570, 613, 693
MluNI TGGCCA 1 cut(s) 10
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 3 cut(s) 426, 438, 477
MnlI CCTC 2 cut(s) 106, 142
Mox20I TGGCCA 1 cut(s) 10
MroI TCCGGA 1 cut(s) 171
MscI TGGCCA 1 cut(s) 10
MseI TTAA 2 cut(s) 666, 696
MslI CAYNNNNRTG 4 cut(s) 269, 534, 639, 730
Msp20I TGGCCA 1 cut(s) 10
MspI CCGG 7 cut(s) 172, 181, 191, 212, 255, 350, 456
MspR9I CCNGG 2 cut(s) 256, 350
MunI CAATTG 2 cut(s) 470, 570
MwoI GCNNNNNNNGC 3 cut(s) 280, 315, 359
NciI CCSGG 2 cut(s) 256, 350
NdeII GATC 5 cut(s) 183, 499, 598, 631, 685
NlaIII CATG 4 cut(s) 164, 533, 554, 641
NlaIV GGNNCC 3 cut(s) 185, 195, 273
NmuCI GTSAC 2 cut(s) 338, 427
OliI CACNNNNGTG 2 cut(s) 269, 730
PagI TCATGA 1 cut(s) 550
PflMI CCANNNNNTGG 1 cut(s) 424
PkrI GCNGC 1 cut(s) 317
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
Ppu21I YACGTR 1 cut(s) 679
PspN4I GGNNCC 3 cut(s) 185, 195, 273
PspPI GGNCC 1 cut(s) 169
PsuI RGATCY 1 cut(s) 183
RseI CAYNNNNRTG 4 cut(s) 269, 534, 639, 730
SaqAI TTAA 2 cut(s) 666, 696
SatI GCNGC 1 cut(s) 316
Sau3AI GATC 5 cut(s) 183, 499, 598, 631, 685
Sau96I GGNCC 1 cut(s) 169
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 2 cut(s) 256, 350
SduI GDGCHC 1 cut(s) 332
SetI ASST 7 cut(s) 98, 228, 273, 393, 408, 681, 734
SinI GGWCC 1 cut(s) 169
SmiMI CAYNNNNRTG 4 cut(s) 269, 534, 639, 730
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
Sse9I AATT 5 cut(s) 127, 470, 570, 613, 693
SsiI CCGC 3 cut(s) 315, 436, 483
StyD4I CCNGG 2 cut(s) 254, 348
StyI CCWWGG 5 cut(s) 267, 357, 363, 375, 486
TaaI ACNGT 3 cut(s) 43, 198, 607
TaiI ACGT 4 cut(s) 228, 408, 681, 734
TaqI TCGA 2 cut(s) 237, 601
TasI AATT 5 cut(s) 127, 470, 570, 613, 693
TauI GCSGC 1 cut(s) 318
Tru1I TTAA 2 cut(s) 666, 696
Tru9I TTAA 2 cut(s) 666, 696
TseFI GTSAC 2 cut(s) 338, 427
Tsp45I GTSAC 2 cut(s) 338, 427
TspDTI ATGAA 5 cut(s) 48, 100, 155, 567, 663
Van91I CCANNNNNTGG 1 cut(s) 424
VneI GTGCAC 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 169
XcmI CCANNNNNNNNNTGG 2 cut(s) 421, 493
ZraI GACGTC 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.