Prupe.3G298600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014170
Physical Location & Seq
Forward (+)
26433100 .. 26434267
1168 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G298600.1

Sequence Viewer

Length: 588 bp
ATGAAGAGAGAGGGTCGCCAGCACGGGATGGTTCGGACTTACCGGGTCCTACCCGACCCATTGAACCCAAGACCAGAAACCCGACACGTGAACAGGTTTGATTCACCTCCTACAGCCGGGTTGTTCACCAAGGTGGCCACCAAGCCTACCAACCACTCCAAGTTCACGGGCAAGTGCGGCAAGCCCAGGTGCACCGAGTGTCACATCCACCCGGCTTCTAAGGCCAAGGACAAGACCAAAGGGAACCACAAGCTCAAGTCATCCGACGTCTTATCCAATCATCGTTTGGTCACTTGGCGGGTTGTGGACAGCCGGCCCAGCTCGAATTTTTCCGGGTTTTCTGCCACGGGGATTTTGGATCATCTGTCTACTAGAGATTATGATAACGATGATGATGATGAAGAAGATGATGAAATCAATGGTTATGCAAGTAGAGCCTATGATAATAGAAATGATCATGATGTGAGGGTGGATTGTGATGAGGTTGAGGAAGATGGTAATTATGAAGAGATGGGTTTCTTTAATGTGGAATATGTGATTGATCCAATTGAGGAAGATGAAGGGTGGTGTTTAGTGCCACAAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

22.28

Weight (kDa)

5.35

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40690
fragaria_vesca FvH4_6g52330
malus_domestica MD09G1018600.v1.1 MD17G1019100.v1.1
prunus_persica Prupe.3G298500_v2.0.a1 Prupe.3G298600_v2.0.a1
pyrus_communis pycom111g01550 pycom17g01590
rosa_chinensis RchiOBHm_Chr2g0173921
rosa_laevigata RLG00000022234
rosa_multiflora Rmu_co8413491.1_g000001
rosa_rugosa Rorug02G0573800
rosa_samantha Rh2AG652700 Rh2BG663900 Rh2CG628500 Rh2DG678800
rosa_wichuraiana Rw2G053620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 270
AccI GTMKAC 1 cut(s) 368
AciI CCGC 2 cut(s) 177, 298
AclWI GGATC 2 cut(s) 366, 536
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 1 cut(s) 325
AcvI CACGTG 1 cut(s) 88
AcyI GRCGYC 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 198
AfiI CCNNNNNNNGG 1 cut(s) 116
AflIII ACRYGT 1 cut(s) 85
AgsI TTSAA 1 cut(s) 64
AjnI CCWGG 1 cut(s) 185
AleI CACNNNNGTG 2 cut(s) 131, 583
AluBI AGCT 2 cut(s) 253, 321
AluI AGCT 2 cut(s) 253, 321
Alw21I GWGCWC 1 cut(s) 194
Alw44I GTGCAC 1 cut(s) 190
AlwI GGATC 2 cut(s) 366, 536
AoxI GGCC 3 cut(s) 135, 222, 314
ApaLI GTGCAC 1 cut(s) 190
ApoI RAATTY 1 cut(s) 325
AspS9I GGNCC 2 cut(s) 46, 315
AsuC2I CCSGG 4 cut(s) 44, 118, 212, 334
AsuHPI GGTGA 2 cut(s) 96, 118
AvaII GGWCC 1 cut(s) 46
BaeGI GKGCMC 1 cut(s) 194
BalI TGGCCA 1 cut(s) 137
BbrPI CACGTG 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 194
BccI CCATC 3 cut(s) 22, 488, 505
BciT130I CCWGG 1 cut(s) 187
BclI TGATCA 1 cut(s) 454
BcnI CCSGG 4 cut(s) 44, 118, 212, 334
BfaI CTAG 1 cut(s) 372
BfmI CTRYAG 1 cut(s) 111
BisI GCNGC 1 cut(s) 178
BlsI GCNGC 1 cut(s) 179
Bme1390I CCNGG 5 cut(s) 44, 118, 187, 212, 334
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 2 cut(s) 46, 315
BmiI GGNNCC 2 cut(s) 47, 245
BmrFI CCNGG 5 cut(s) 44, 118, 187, 212, 334
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 4 cut(s) 44, 118, 212, 334
BsaAI YACGTR 1 cut(s) 88
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 4 cut(s) 129, 185, 225, 345
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse118I RCCGGY 1 cut(s) 312
BseBI CCWGG 1 cut(s) 187
BseDI CCNNGG 4 cut(s) 129, 185, 225, 345
BseGI GGATG 3 cut(s) 33, 204, 260
BseLI CCNNNNNNNGG 1 cut(s) 116
BseSI GKGCMC 1 cut(s) 194
BseYI CCCAGC 1 cut(s) 317
BshFI GGCC 3 cut(s) 137, 224, 316
BsiHKAI GWGCWC 1 cut(s) 194
BsiSI CCGG 5 cut(s) 43, 117, 212, 313, 333
BslI CCNNNNNNNGG 1 cut(s) 116
BsnI GGCC 3 cut(s) 137, 224, 316
Bsp1286I GDGCHC 1 cut(s) 194
Bsp143I GATC 3 cut(s) 358, 454, 541
BspACI CCGC 2 cut(s) 177, 298
BspANI GGCC 3 cut(s) 137, 224, 316
BspHI TCATGA 1 cut(s) 457
BspLI GGNNCC 2 cut(s) 47, 245
BspPI GGATC 2 cut(s) 366, 536
BsrFI RCCGGY 1 cut(s) 312
BssAI RCCGGY 1 cut(s) 312
BssECI CCNNGG 4 cut(s) 129, 185, 225, 345
BssMI GATC 3 cut(s) 358, 454, 541
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 2 cut(s) 129, 225
Bst2UI CCWGG 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 501
BstACI GRCGYC 1 cut(s) 267
BstBAI YACGTR 1 cut(s) 88
BstC8I GCNNGC 3 cut(s) 20, 182, 314
BstDEI CTNAG 1 cut(s) 219
BstDSI CCRYGG 1 cut(s) 345
BstF5I GGATG 3 cut(s) 33, 204, 260
BstKTI GATC 3 cut(s) 361, 457, 544
BstMBI GATC 3 cut(s) 358, 454, 541
BstMWI GCNNNNNNNGC 4 cut(s) 177, 221, 318, 434
BstNI CCWGG 1 cut(s) 187
BstSCI CCNGG 5 cut(s) 42, 116, 185, 210, 332
BstSFI CTRYAG 1 cut(s) 111
BstSLI GKGCMC 1 cut(s) 194
BsuRI GGCC 3 cut(s) 137, 224, 316
BtgI CCRYGG 1 cut(s) 345
BtsCI GGATG 3 cut(s) 33, 204, 260
Cac8I GCNNGC 3 cut(s) 20, 182, 314
CciI TCATGA 1 cut(s) 457
Cfr10I RCCGGY 1 cut(s) 312
Cfr13I GGNCC 2 cut(s) 46, 315
CviAII CATG 1 cut(s) 458
DdeI CTNAG 1 cut(s) 219
DpnI GATC 3 cut(s) 360, 456, 543
DpnII GATC 3 cut(s) 358, 454, 541
DraIII CACNNNGTG 1 cut(s) 198
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 1 cut(s) 501
EarI CTCTTC 1 cut(s) 501
Eco130I CCWWGG 2 cut(s) 129, 225
Eco47I GGWCC 1 cut(s) 46
Eco72I CACGTG 1 cut(s) 88
EcoO109I RGGNCCY 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 185
EcoT14I CCWWGG 2 cut(s) 129, 225
ErhI CCWWGG 2 cut(s) 129, 225
FaeI CATG 1 cut(s) 461
FaiI YATR 6 cut(s) 381, 426, 441, 459, 504, 534
FatI CATG 1 cut(s) 457
FauI CCCGC 1 cut(s) 291
FbaI TGATCA 1 cut(s) 454
FblI GTMKAC 1 cut(s) 368
Fnu4HI GCNGC 1 cut(s) 178
FokI GGATG 3 cut(s) 40, 191, 247
Fsp4HI GCNGC 1 cut(s) 178
FspBI CTAG 1 cut(s) 372
GluI GCNGC 1 cut(s) 178
GsaI CCCAGC 1 cut(s) 321
HaeIII GGCC 3 cut(s) 137, 224, 316
HapII CCGG 5 cut(s) 43, 117, 212, 313, 333
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 1 cut(s) 461
HinfI GANTC 1 cut(s) 101
HpaII CCGG 5 cut(s) 43, 117, 212, 313, 333
HphI GGTGA 2 cut(s) 96, 118
Hpy166II GTNNAC 6 cut(s) 91, 126, 165, 192, 307, 369
Hpy188I TCNGA 2 cut(s) 36, 265
Hpy188III TCNNGA 1 cut(s) 458
Hpy8I GTNNAC 6 cut(s) 91, 126, 165, 192, 307, 369
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 1 cut(s) 554
HpyCH4IV ACGT 3 cut(s) 87, 267, 584
HpyCH4V TGCA 2 cut(s) 192, 428
HpyF10VI GCNNNNNNNGC 4 cut(s) 177, 221, 318, 434
HpyF3I CTNAG 1 cut(s) 219
HpySE526I ACGT 3 cut(s) 87, 267, 584
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 1 cut(s) 461
KroI GCCGGC 1 cut(s) 312
KroNI GCCGGC 1 cut(s) 314
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 3 cut(s) 358, 454, 541
MaeI CTAG 1 cut(s) 372
MaeII ACGT 3 cut(s) 87, 267, 584
MaeIII GTNAC 2 cut(s) 200, 289
MalI GATC 3 cut(s) 360, 456, 543
MboI GATC 3 cut(s) 358, 454, 541
MboII GAAGA 6 cut(s) 16, 413, 416, 503, 518, 566
MfeI CAATTG 1 cut(s) 546
MhlI GDGCHC 1 cut(s) 194
MlsI TGGCCA 1 cut(s) 137
MluCI AATT 3 cut(s) 325, 499, 546
MluNI TGGCCA 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 6 cut(s) 4, 117, 459, 475, 481, 544
Mox20I TGGCCA 1 cut(s) 137
MroNI GCCGGC 1 cut(s) 312
MscI TGGCCA 1 cut(s) 137
MseI TTAA 1 cut(s) 522
MslI CAYNNNNRTG 2 cut(s) 131, 583
Msp20I TGGCCA 1 cut(s) 137
MspI CCGG 5 cut(s) 43, 117, 212, 313, 333
MspR9I CCNGG 5 cut(s) 44, 118, 187, 212, 334
MunI CAATTG 1 cut(s) 546
MvaI CCWGG 1 cut(s) 187
MwoI GCNNNNNNNGC 4 cut(s) 177, 221, 318, 434
NaeI GCCGGC 1 cut(s) 314
NciI CCSGG 4 cut(s) 44, 118, 212, 334
NdeII GATC 3 cut(s) 358, 454, 541
NgoMIV GCCGGC 1 cut(s) 312
NlaIII CATG 1 cut(s) 461
NlaIV GGNNCC 2 cut(s) 47, 245
NmuCI GTSAC 2 cut(s) 200, 289
OliI CACNNNNGTG 2 cut(s) 131, 583
PagI TCATGA 1 cut(s) 457
PdiI GCCGGC 1 cut(s) 314
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 179
PmaCI CACGTG 1 cut(s) 88
PmlI CACGTG 1 cut(s) 88
Ppu21I YACGTR 1 cut(s) 88
PpuMI RGGWCCY 1 cut(s) 46
Psp5II RGGWCCY 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 185
PspCI CACGTG 1 cut(s) 88
PspFI CCCAGC 1 cut(s) 317
PspGI CCWGG 1 cut(s) 185
PspN4I GGNNCC 2 cut(s) 47, 245
PspPI GGNCC 2 cut(s) 46, 315
PspPPI RGGWCCY 1 cut(s) 46
RseI CAYNNNNRTG 2 cut(s) 131, 583
SaqAI TTAA 1 cut(s) 522
SatI GCNGC 1 cut(s) 178
Sau3AI GATC 3 cut(s) 358, 454, 541
Sau96I GGNCC 2 cut(s) 46, 315
ScrFI CCNGG 5 cut(s) 44, 118, 187, 212, 334
SduI GDGCHC 1 cut(s) 194
SfcI CTRYAG 1 cut(s) 111
SinI GGWCC 1 cut(s) 46
SmiMI CAYNNNNRTG 2 cut(s) 131, 583
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 3 cut(s) 325, 499, 546
SsiI CCGC 2 cut(s) 177, 298
SspMI CTAG 1 cut(s) 372
StyD4I CCNGG 5 cut(s) 42, 116, 185, 210, 332
StyI CCWWGG 2 cut(s) 129, 225
TaiI ACGT 3 cut(s) 90, 270, 587
TaqI TCGA 1 cut(s) 323
TasI AATT 3 cut(s) 325, 499, 546
TauI GCSGC 1 cut(s) 180
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 522
Tru9I TTAA 1 cut(s) 522
TseFI GTSAC 2 cut(s) 200, 289
Tsp45I GTSAC 2 cut(s) 200, 289
TspDTI ATGAA 5 cut(s) 17, 414, 426, 519, 573
VneI GTGCAC 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 46
XapI RAATTY 1 cut(s) 325
XcmI CCANNNNNNNNNTGG 2 cut(s) 283, 352
XmiI GTMKAC 1 cut(s) 368
XspI CTAG 1 cut(s) 372
ZraI GACGTC 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.