Rh2BG663900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0014170
Physical Location & Seq
Forward (+)
87763735 .. 87765119
1385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG663900.1

Sequence Viewer

Length: 567 bp
ATGAAGAGAGAGGGTCGCCAACACGGAATGGTCCGGACATATCGGGTTCTACCTACCGTATTGAACCCGAGGCCTGAGACCCGACACGTCAACAAGTTCGATTCACTCCCCACGGCTGGGTTGTTCACCAAAGTGTCCAACAAGCCAAACAACCACTCCAAATACACGAGCAAGTGCACCAAGCGTAGGTGCACCGAGTGTCACATCCACCCGGCTAGTAAGTCCAAGGACAAGACCAAAGGGAACCAAAAGCTCAAGTCAAGTGACGTCGTGGTGAACCACAGGTTGGTCACATGGCGGGTTGTGGATGGACGATCCGGATTTAATTTTTCTGGATCGTCTGCCACGGGGATTTTGGATAATTTGTCTAGTGATGACTATGATAATAGTCGTGATGGTGACGATGAGGATGATGAAATCGATGATAATGAATCGAGGTTGGATTTCAATGATGTTGATGAAAAGGGAAGTAATGGTGAAGAGGTGATGGGTTTCTATAATGTGGATAATATGTTTGATTATCAAATTGAAGAAGATGAAGGTTGGTGCCTAGTGCCCCAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

21.41

Weight (kDa)

5.53

Isoelectric Point (pI)

51.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40690
fragaria_vesca FvH4_6g52330
malus_domestica MD09G1018600.v1.1 MD17G1019100.v1.1
prunus_persica Prupe.3G298500_v2.0.a1 Prupe.3G298600_v2.0.a1
pyrus_communis pycom111g01550 pycom17g01590
rosa_chinensis RchiOBHm_Chr2g0173921
rosa_laevigata RLG00000022234
rosa_multiflora Rmu_co8413491.1_g000001
rosa_rugosa Rorug02G0573800
rosa_samantha Rh2AG652700 Rh2BG663900 Rh2CG628500 Rh2DG678800
rosa_wichuraiana Rw2G053620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 270
AccB1I GGYRCC 1 cut(s) 546
AccB7I CCANNNNNTGG 1 cut(s) 286
AccIII TCCGGA 2 cut(s) 33, 317
AciI CCGC 1 cut(s) 298
AclWI GGATC 2 cut(s) 309, 343
AcyI GRCGYC 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 198
AfiI CCNNNNNNNGG 4 cut(s) 116, 117, 186, 286
AflIII ACRYGT 1 cut(s) 85
AgsI TTSAA 3 cut(s) 64, 448, 530
AjiI CACGTC 1 cut(s) 88
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AleI CACNNNNGTG 1 cut(s) 131
AluBI AGCT 1 cut(s) 253
AluI AGCT 1 cut(s) 253
Alw21I GWGCWC 2 cut(s) 179, 194
Alw26I GTCTC 1 cut(s) 71
Alw44I GTGCAC 2 cut(s) 175, 190
AlwI GGATC 2 cut(s) 309, 343
Ama87I CYCGRG 1 cut(s) 67
Aor13HI TCCGGA 2 cut(s) 33, 317
AoxI GGCC 1 cut(s) 71
ApaLI GTGCAC 2 cut(s) 175, 190
AspS9I GGNCC 1 cut(s) 31
AsuC2I CCSGG 1 cut(s) 212
AsuHPI GGTGA 5 cut(s) 118, 286, 410, 488, 496
AvaI CYCGRG 1 cut(s) 67
AvaII GGWCC 1 cut(s) 31
BaeGI GKGCMC 3 cut(s) 179, 194, 558
BanI GGYRCC 1 cut(s) 546
BauI CACGAG 1 cut(s) 166
Bbv12I GWGCWC 2 cut(s) 179, 194
BccI CCATC 3 cut(s) 302, 389, 481
BceAI ACGGC 1 cut(s) 129
BcnI CCSGG 1 cut(s) 212
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 3 cut(s) 216, 369, 551
Bme1390I CCNGG 1 cut(s) 212
Bme18I GGWCC 1 cut(s) 31
BmeT110I CYCGRG 1 cut(s) 67
BmgBI CACGTC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 2 cut(s) 245, 548
BmrFI CCNGG 1 cut(s) 212
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 212
Bsa29I ATCGAT 1 cut(s) 420
BsaHI GRCGYC 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 4 cut(s) 68, 111, 225, 345
BsaWI WCCGGW 2 cut(s) 33, 317
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 4 cut(s) 116, 117, 186, 286
BseAI TCCGGA 2 cut(s) 33, 317
BseCI ATCGAT 1 cut(s) 420
BseDI CCNNGG 4 cut(s) 68, 111, 225, 345
BseGI GGATG 3 cut(s) 204, 313, 415
BseLI CCNNNNNNNGG 4 cut(s) 116, 117, 186, 286
BseMII CTCAG 1 cut(s) 66
BseSI GKGCMC 3 cut(s) 179, 194, 558
BseYI CCCAGC 1 cut(s) 116
BshFI GGCC 1 cut(s) 73
BshNI GGYRCC 1 cut(s) 546
BshVI ATCGAT 1 cut(s) 420
BsiHKAI GWGCWC 2 cut(s) 179, 194
BsiHKCI CYCGRG 1 cut(s) 67
BsiSI CCGG 3 cut(s) 34, 212, 318
BslI CCNNNNNNNGG 4 cut(s) 116, 117, 186, 286
BsmAI GTCTC 1 cut(s) 71
BsnI GGCC 1 cut(s) 73
Bso31I GGTCTC 1 cut(s) 71
BsoBI CYCGRG 1 cut(s) 67
Bsp1286I GDGCHC 3 cut(s) 179, 194, 558
Bsp13I TCCGGA 2 cut(s) 33, 317
Bsp143I GATC 2 cut(s) 314, 335
BspACI CCGC 1 cut(s) 298
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 67
BspDI ATCGAT 1 cut(s) 420
BspEI TCCGGA 2 cut(s) 33, 317
BspLI GGNNCC 2 cut(s) 245, 548
BspPI GGATC 2 cut(s) 309, 343
BspT107I GGYRCC 1 cut(s) 546
BspTNI GGTCTC 1 cut(s) 71
BssECI CCNNGG 4 cut(s) 68, 111, 225, 345
BssMI GATC 2 cut(s) 314, 335
BssNI GRCGYC 1 cut(s) 267
BssSI CACGAG 1 cut(s) 166
BssT1I CCWWGG 1 cut(s) 225
Bst2BI CACGAG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 474
BstACI GRCGYC 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 75
BstDSI CCRYGG 2 cut(s) 111, 345
BstF5I GGATG 3 cut(s) 204, 313, 415
BstKTI GATC 2 cut(s) 317, 338
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 2 cut(s) 314, 335
BstSCI CCNGG 1 cut(s) 210
BstSLI GKGCMC 3 cut(s) 179, 194, 558
Bsu15I ATCGAT 1 cut(s) 420
BsuRI GGCC 1 cut(s) 73
BsuTUI ATCGAT 1 cut(s) 420
BtgI CCRYGG 2 cut(s) 111, 345
BtrI CACGTC 1 cut(s) 88
BtsCI GGATG 3 cut(s) 204, 313, 415
Cfr13I GGNCC 1 cut(s) 31
ClaI ATCGAT 1 cut(s) 420
CviAII CATG 2 cut(s) 294, 564
CviJI RGCY 5 cut(s) 73, 116, 145, 215, 253
CviKI_1 RGCY 5 cut(s) 73, 116, 145, 215, 253
DdeI CTNAG 1 cut(s) 75
DpnI GATC 2 cut(s) 316, 337
DpnII GATC 2 cut(s) 314, 335
DraIII CACNNNGTG 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
Eco130I CCWWGG 1 cut(s) 225
Eco147I AGGCCT 1 cut(s) 73
Eco31I GGTCTC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 31
Eco88I CYCGRG 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 2 cut(s) 297, 567
FaiI YATR 6 cut(s) 40, 295, 381, 498, 512, 565
FatI CATG 2 cut(s) 293, 563
FauI CCCGC 1 cut(s) 291
FokI GGATG 3 cut(s) 191, 320, 422
FspBI CTAG 3 cut(s) 216, 369, 551
GsaI CCCAGC 1 cut(s) 120
HaeIII GGCC 1 cut(s) 73
HapII CCGG 3 cut(s) 34, 212, 318
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 2 cut(s) 297, 567
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 2 cut(s) 101, 431
HpaII CCGG 3 cut(s) 34, 212, 318
HphI GGTGA 5 cut(s) 118, 286, 410, 488, 496
Hpy166II GTNNAC 5 cut(s) 91, 126, 177, 192, 277
Hpy188III TCNNGA 4 cut(s) 34, 318, 333, 392
Hpy8I GTNNAC 5 cut(s) 91, 126, 177, 192, 277
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 1 cut(s) 533
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 2 cut(s) 87, 267
HpyCH4V TGCA 2 cut(s) 177, 192
HpyF3I CTNAG 1 cut(s) 75
HpySE526I ACGT 2 cut(s) 87, 267
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 2 cut(s) 297, 567
Kpn2I TCCGGA 2 cut(s) 33, 317
Kzo9I GATC 2 cut(s) 314, 335
LpnPI CCDG 7 cut(s) 47, 87, 102, 225, 268, 318, 331
MaeI CTAG 3 cut(s) 216, 369, 551
MaeII ACGT 2 cut(s) 87, 267
MaeIII GTNAC 4 cut(s) 200, 263, 289, 398
MalI GATC 2 cut(s) 316, 337
MboI GATC 2 cut(s) 314, 335
MboII GAAGA 4 cut(s) 16, 491, 542, 545
MhlI GDGCHC 3 cut(s) 179, 194, 558
MluCI AATT 3 cut(s) 325, 361, 525
MmeI TCCRAC 2 cut(s) 162, 420
MnlI CCTC 5 cut(s) 4, 63, 400, 429, 475
MroI TCCGGA 2 cut(s) 33, 317
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 1 cut(s) 131
MspI CCGG 3 cut(s) 34, 212, 318
MspR9I CCNGG 1 cut(s) 212
NciI CCSGG 1 cut(s) 212
NdeII GATC 2 cut(s) 314, 335
NlaIII CATG 2 cut(s) 297, 567
NlaIV GGNNCC 2 cut(s) 245, 548
NmuCI GTSAC 4 cut(s) 200, 263, 289, 398
OliI CACNNNNGTG 1 cut(s) 131
PceI AGGCCT 1 cut(s) 73
PfeI GAWTC 2 cut(s) 101, 431
PflMI CCANNNNNTGG 1 cut(s) 286
PspFI CCCAGC 1 cut(s) 116
PspN4I GGNNCC 2 cut(s) 245, 548
PspPI GGNCC 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 131
SaqAI TTAA 1 cut(s) 324
Sau3AI GATC 2 cut(s) 314, 335
Sau96I GGNCC 1 cut(s) 31
ScrFI CCNGG 1 cut(s) 212
SduI GDGCHC 3 cut(s) 179, 194, 558
SetI ASST 9 cut(s) 55, 90, 191, 255, 270, 287, 440, 486, 544
SinI GGWCC 1 cut(s) 31
SmiMI CAYNNNNRTG 1 cut(s) 131
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 3 cut(s) 325, 361, 525
SseBI AGGCCT 1 cut(s) 73
SsiI CCGC 1 cut(s) 298
SspMI CTAG 3 cut(s) 216, 369, 551
StuI AGGCCT 1 cut(s) 73
StyD4I CCNGG 1 cut(s) 210
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 2 cut(s) 90, 270
TaqI TCGA 3 cut(s) 99, 420, 434
TasI AATT 3 cut(s) 325, 361, 525
TfiI GAWTC 2 cut(s) 101, 431
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TseFI GTSAC 4 cut(s) 200, 263, 289, 398
Tsp45I GTSAC 4 cut(s) 200, 263, 289, 398
TspDTI ATGAA 5 cut(s) 17, 429, 444, 474, 552
TspGWI ACGGA 1 cut(s) 39
Van91I CCANNNNNTGG 1 cut(s) 286
VneI GTGCAC 2 cut(s) 175, 190
VpaK11BI GGWCC 1 cut(s) 31
XcmI CCANNNNNNNNNTGG 1 cut(s) 352
XspI CTAG 3 cut(s) 216, 369, 551
ZraI GACGTC 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.