FvH4_6g52330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014170
Physical Location & Seq
Forward (+)
38570330 .. 38571566
1237 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52330.t1

Sequence Viewer

Length: 543 bp
ATGAAGAGAGAGGGTCGCCAACACGGAATGGTTCGGACATACCGGGTTCTACCCGCTACATTGAACCCGAGGGCCGAGACCCGACATGTCAACAAGTTCGACTCCCTCCCCACGGCAGGGTTGTTCACCAAAGTGTCCACCAGGCCCAACAACCACTCGAAATACACGAGCAAGTGCACCAAACCCAAGTGCACCGAGTGTCGCATCCACCCGGCTAGTAAGTCCAAGGACAAGACCAAAGGTAACCAAAAGCTCAAATCAAGTGATGTTGTGACCAACCACAGGTTGGTCACATGGCGTGTCGTGGATGGGCGATCCGGATTGAATTTTTCTGGATTGTCCGCCACGGGGATTTTGGATAATTTGTCTAGTGGTTATTATGATACTCATGATGGTGATGAAGATGAGAAAAACGAAATCGATGATGTTGACGAAAATGGGAGTATCGGTAGTGAAGAGGTGATGAGTTGCTGTAATGTGGATAATGTGTTCGATTATCAAATTGAAGAAGATGAAGGTTGGTGCCTAGTTCCCCAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

20.19

Weight (kDa)

6.3

Isoelectric Point (pI)

41.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40690
fragaria_vesca FvH4_6g52330
malus_domestica MD09G1018600.v1.1 MD17G1019100.v1.1
prunus_persica Prupe.3G298500_v2.0.a1 Prupe.3G298600_v2.0.a1
pyrus_communis pycom111g01550 pycom17g01590
rosa_chinensis RchiOBHm_Chr2g0173921
rosa_laevigata RLG00000022234
rosa_multiflora Rmu_co8413491.1_g000001
rosa_rugosa Rorug02G0573800
rosa_samantha Rh2AG652700 Rh2BG663900 Rh2CG628500 Rh2DG678800
rosa_wichuraiana Rw2G053620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 522
AccB7I CCANNNNNTGG 1 cut(s) 286
AccIII TCCGGA 1 cut(s) 317
AciI CCGC 2 cut(s) 54, 342
AclWI GGATC 1 cut(s) 309
AcsI RAATTY 1 cut(s) 325
AdeI CACNNNGTG 1 cut(s) 198
AfiI CCNNNNNNNGG 6 cut(s) 112, 116, 117, 282, 286, 348
AflIII ACRYGT 1 cut(s) 85
AgsI TTSAA 3 cut(s) 64, 325, 506
AjnI CCWGG 1 cut(s) 140
AleI CACNNNNGTG 1 cut(s) 131
AloI GAACNNNNNNTCC 2 cut(s) 473, 505
AluBI AGCT 1 cut(s) 253
AluI AGCT 1 cut(s) 253
Alw21I GWGCWC 2 cut(s) 179, 194
Alw26I GTCTC 1 cut(s) 71
Alw44I GTGCAC 2 cut(s) 175, 190
AlwI GGATC 1 cut(s) 309
Ama87I CYCGRG 1 cut(s) 67
Aor13HI TCCGGA 1 cut(s) 317
AoxI GGCC 2 cut(s) 72, 143
ApaLI GTGCAC 2 cut(s) 175, 190
ApoI RAATTY 1 cut(s) 325
AspS9I GGNCC 2 cut(s) 72, 144
AsuC2I CCSGG 2 cut(s) 44, 212
AsuHPI GGTGA 3 cut(s) 118, 407, 472
AvaI CYCGRG 1 cut(s) 67
BaeGI GKGCMC 2 cut(s) 179, 194
BanI GGYRCC 1 cut(s) 522
BauI CACGAG 1 cut(s) 166
Bbv12I GWGCWC 2 cut(s) 179, 194
BccI CCATC 2 cut(s) 302, 386
BceAI ACGGC 1 cut(s) 129
BciT130I CCWGG 1 cut(s) 142
BcnI CCSGG 2 cut(s) 44, 212
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 3 cut(s) 216, 369, 527
Bme1390I CCNGG 3 cut(s) 44, 142, 212
BmeT110I CYCGRG 1 cut(s) 67
BmgT120I GGNCC 2 cut(s) 72, 144
BmiI GGNNCC 1 cut(s) 524
BmrFI CCNGG 3 cut(s) 44, 142, 212
BmsI GCATC 1 cut(s) 213
BpuMI CCSGG 2 cut(s) 44, 212
Bsa29I ATCGAT 1 cut(s) 420
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 4 cut(s) 68, 111, 225, 345
BsaWI WCCGGW 1 cut(s) 317
BsaXI ACNNNNNCTCC 2 cut(s) 433, 463
Bsc4I CCNNNNNNNGG 6 cut(s) 112, 116, 117, 282, 286, 348
BseAI TCCGGA 1 cut(s) 317
BseBI CCWGG 1 cut(s) 142
BseCI ATCGAT 1 cut(s) 420
BseDI CCNNGG 4 cut(s) 68, 111, 225, 345
BseGI GGATG 2 cut(s) 204, 313
BseLI CCNNNNNNNGG 6 cut(s) 112, 116, 117, 282, 286, 348
BseSI GKGCMC 2 cut(s) 179, 194
BshFI GGCC 2 cut(s) 74, 145
BshNI GGYRCC 1 cut(s) 522
BshVI ATCGAT 1 cut(s) 420
BsiHKAI GWGCWC 2 cut(s) 179, 194
BsiHKCI CYCGRG 1 cut(s) 67
BsiSI CCGG 3 cut(s) 43, 212, 318
BslI CCNNNNNNNGG 6 cut(s) 112, 116, 117, 282, 286, 348
BsmAI GTCTC 1 cut(s) 71
BsnI GGCC 2 cut(s) 74, 145
Bso31I GGTCTC 1 cut(s) 71
BsoBI CYCGRG 1 cut(s) 67
Bsp1286I GDGCHC 2 cut(s) 179, 194
Bsp13I TCCGGA 1 cut(s) 317
Bsp143I GATC 1 cut(s) 314
BspACI CCGC 2 cut(s) 54, 342
BspANI GGCC 2 cut(s) 74, 145
BspDI ATCGAT 1 cut(s) 420
BspEI TCCGGA 1 cut(s) 317
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 1 cut(s) 524
BspPI GGATC 1 cut(s) 309
BspT107I GGYRCC 1 cut(s) 522
BspTNI GGTCTC 1 cut(s) 71
BssECI CCNNGG 4 cut(s) 68, 111, 225, 345
BssMI GATC 1 cut(s) 314
BssSI CACGAG 1 cut(s) 166
BssT1I CCWWGG 1 cut(s) 225
Bst2BI CACGAG 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 450
BstDSI CCRYGG 2 cut(s) 111, 345
BstEII GGTNACC 1 cut(s) 242
BstF5I GGATG 2 cut(s) 204, 313
BstKTI GATC 1 cut(s) 317
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 1 cut(s) 314
BstNI CCWGG 1 cut(s) 142
BstNSI RCATGY 1 cut(s) 89
BstPI GGTNACC 1 cut(s) 242
BstSCI CCNGG 3 cut(s) 42, 140, 210
BstSLI GKGCMC 2 cut(s) 179, 194
Bsu15I ATCGAT 1 cut(s) 420
BsuRI GGCC 2 cut(s) 74, 145
BsuTUI ATCGAT 1 cut(s) 420
BtgI CCRYGG 2 cut(s) 111, 345
BtsCI GGATG 2 cut(s) 204, 313
CciI TCATGA 1 cut(s) 388
Cfr13I GGNCC 2 cut(s) 72, 144
ClaI ATCGAT 1 cut(s) 420
CviAII CATG 4 cut(s) 86, 294, 389, 540
CviJI RGCY 4 cut(s) 74, 145, 215, 253
CviKI_1 RGCY 4 cut(s) 74, 145, 215, 253
DpnI GATC 1 cut(s) 316
DpnII GATC 1 cut(s) 314
DraIII CACNNNGTG 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
EciI GGCGGA 1 cut(s) 331
Eco130I CCWWGG 1 cut(s) 225
Eco31I GGTCTC 1 cut(s) 71
Eco88I CYCGRG 1 cut(s) 67
Eco91I GGTNACC 1 cut(s) 242
EcoO65I GGTNACC 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 4 cut(s) 89, 297, 392, 543
FaiI YATR 6 cut(s) 40, 87, 295, 381, 390, 541
FatI CATG 4 cut(s) 85, 293, 388, 539
FauI CCCGC 1 cut(s) 61
FokI GGATG 2 cut(s) 191, 320
FspBI CTAG 3 cut(s) 216, 369, 527
HaeIII GGCC 2 cut(s) 74, 145
HapII CCGG 3 cut(s) 43, 212, 318
Hin1II CATG 4 cut(s) 89, 297, 392, 543
HincII GTYRAC 2 cut(s) 91, 430
HindII GTYRAC 2 cut(s) 91, 430
HinfI GANTC 1 cut(s) 101
HpaII CCGG 3 cut(s) 43, 212, 318
HphI GGTGA 3 cut(s) 118, 407, 472
Hpy166II GTNNAC 6 cut(s) 91, 126, 138, 177, 192, 430
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 3 cut(s) 318, 333, 389
Hpy8I GTNNAC 6 cut(s) 91, 126, 138, 177, 192, 430
HpyAV CCTTC 1 cut(s) 509
HpyCH4V TGCA 2 cut(s) 177, 192
Hsp92II CATG 4 cut(s) 89, 297, 392, 543
Kpn2I TCCGGA 1 cut(s) 317
Kzo9I GATC 1 cut(s) 314
LpnPI CCDG 8 cut(s) 56, 102, 127, 154, 225, 268, 318, 331
LweI GCATC 1 cut(s) 213
MaeI CTAG 3 cut(s) 216, 369, 527
MaeIII GTNAC 3 cut(s) 242, 271, 289
MalI GATC 1 cut(s) 316
MboI GATC 1 cut(s) 314
MboII GAAGA 5 cut(s) 16, 413, 467, 518, 521
MhlI GDGCHC 2 cut(s) 179, 194
MluCI AATT 3 cut(s) 325, 361, 501
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 4 cut(s) 4, 63, 116, 451
MroI TCCGGA 1 cut(s) 317
MslI CAYNNNNRTG 2 cut(s) 131, 393
MspI CCGG 3 cut(s) 43, 212, 318
MspR9I CCNGG 3 cut(s) 44, 142, 212
MvaI CCWGG 1 cut(s) 142
NciI CCSGG 2 cut(s) 44, 212
NdeII GATC 1 cut(s) 314
NlaIII CATG 4 cut(s) 89, 297, 392, 543
NlaIV GGNNCC 1 cut(s) 524
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 2 cut(s) 271, 289
NspI RCATGY 1 cut(s) 89
OliI CACNNNNGTG 1 cut(s) 131
PagI TCATGA 1 cut(s) 388
PciI ACATGT 1 cut(s) 85
PcsI WCGNNNNNNNCGW 1 cut(s) 164
PflMI CCANNNNNTGG 1 cut(s) 286
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PscI ACATGT 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 140
PspEI GGTNACC 1 cut(s) 242
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 1 cut(s) 524
PspPI GGNCC 2 cut(s) 72, 144
RseI CAYNNNNRTG 2 cut(s) 131, 393
Sau3AI GATC 1 cut(s) 314
Sau96I GGNCC 2 cut(s) 72, 144
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 3 cut(s) 44, 142, 212
SduI GDGCHC 2 cut(s) 179, 194
SetI ASST 5 cut(s) 244, 255, 287, 462, 520
SfaNI GCATC 1 cut(s) 213
SmiMI CAYNNNNRTG 2 cut(s) 131, 393
Sse9I AATT 3 cut(s) 325, 361, 501
SsiI CCGC 2 cut(s) 54, 342
SspMI CTAG 3 cut(s) 216, 369, 527
StyD4I CCNGG 3 cut(s) 42, 140, 210
StyI CCWWGG 1 cut(s) 225
TaqI TCGA 4 cut(s) 99, 158, 420, 492
TasI AATT 3 cut(s) 325, 361, 501
TseFI GTSAC 2 cut(s) 271, 289
Tsp45I GTSAC 2 cut(s) 271, 289
TspDTI ATGAA 3 cut(s) 17, 414, 528
TspGWI ACGGA 1 cut(s) 39
Van91I CCANNNNNTGG 1 cut(s) 286
VneI GTGCAC 2 cut(s) 175, 190
XapI RAATTY 1 cut(s) 325
XceI RCATGY 1 cut(s) 89
XcmI CCANNNNNNNNNTGG 2 cut(s) 283, 352
XspI CTAG 3 cut(s) 216, 369, 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.