Prupe.3G298500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014170
Physical Location & Seq
Forward (+)
26427909 .. 26432388
4480 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G298500.1

Sequence Viewer

Length: 423 bp
ATGAAGAGCGAGGGTCGCCAGCACGGGATGTTCCGGCCTTACCGGGTCCTACCAGACCCATTGAACCTGAGACCCGGAAGCCGACAGGTGAACAAGTTTGATTCACTTTCTACAGCCGGATTATTCACCAAGGTGGCCACCAAGCCCACCAACCACTCCAAGTTCACGGGTAAGTGCGGCAAGCCCAGGTGCACCAAGTGTCACATCCACCCGGCTTCTAAGGCCAAGGACAAGACCAAAGGGAGCCACAAGCTCAAGTCATCCGACGTCATATCCAATCATCGTTTGGTCAAATTTTCCGGGTCTTCCGCCACGGGGATTTTGGATCATCTGTCTACTAGTCATTATGATAACAACGATGATGATGACGAAGAAGATGATGAAATCAATGGTTATGCAAGTGAGTGTGAGTGGAGCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.58

Weight (kDa)

8.88

Isoelectric Point (pI)

41.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40690
fragaria_vesca FvH4_6g52330
malus_domestica MD09G1018600.v1.1 MD17G1019100.v1.1
prunus_persica Prupe.3G298500_v2.0.a1 Prupe.3G298600_v2.0.a1
pyrus_communis pycom111g01550 pycom17g01590
rosa_chinensis RchiOBHm_Chr2g0173921
rosa_laevigata RLG00000022234
rosa_multiflora Rmu_co8413491.1_g000001
rosa_rugosa Rorug02G0573800
rosa_samantha Rh2AG652700 Rh2BG663900 Rh2CG628500 Rh2DG678800
rosa_wichuraiana Rw2G053620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 270
AccI GTMKAC 1 cut(s) 335
AciI CCGC 2 cut(s) 177, 309
AclWI GGATC 1 cut(s) 333
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 1 cut(s) 293
AcyI GRCGYC 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 198
AfiI CCNNNNNNNGG 1 cut(s) 315
AgsI TTSAA 1 cut(s) 64
AhlI ACTAGT 1 cut(s) 338
AjnI CCWGG 1 cut(s) 185
AleI CACNNNNGTG 1 cut(s) 131
AluBI AGCT 1 cut(s) 253
AluI AGCT 1 cut(s) 253
Alw21I GWGCWC 1 cut(s) 194
Alw26I GTCTC 1 cut(s) 64
Alw44I GTGCAC 1 cut(s) 190
AlwI GGATC 1 cut(s) 333
AoxI GGCC 3 cut(s) 35, 135, 222
ApaLI GTGCAC 1 cut(s) 190
ApoI RAATTY 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 46
AsuC2I CCSGG 4 cut(s) 44, 75, 212, 301
AsuHPI GGTGA 2 cut(s) 100, 118
AvaII GGWCC 1 cut(s) 46
BaeGI GKGCMC 1 cut(s) 194
BalI TGGCCA 1 cut(s) 137
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 187
BcnI CCSGG 4 cut(s) 44, 75, 212, 301
BcoDI GTCTC 1 cut(s) 64
BcuI ACTAGT 1 cut(s) 338
BfaI CTAG 1 cut(s) 339
BfmI CTRYAG 1 cut(s) 111
BisI GCNGC 1 cut(s) 178
BlsI GCNGC 1 cut(s) 179
Bme1390I CCNGG 5 cut(s) 44, 75, 187, 212, 301
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 3 cut(s) 47, 245, 416
BmrFI CCNGG 5 cut(s) 44, 75, 187, 212, 301
BpiI GAAGAC 1 cut(s) 297
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 4 cut(s) 44, 75, 212, 301
BsaHI GRCGYC 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 64
BsaJI CCNNGG 4 cut(s) 129, 185, 225, 312
Bsc4I CCNNNNNNNGG 1 cut(s) 315
BseBI CCWGG 1 cut(s) 187
BseDI CCNNGG 4 cut(s) 129, 185, 225, 312
BseGI GGATG 3 cut(s) 33, 204, 260
BseLI CCNNNNNNNGG 1 cut(s) 315
BseMII CTCAG 1 cut(s) 59
BseSI GKGCMC 1 cut(s) 194
BshFI GGCC 3 cut(s) 37, 137, 224
BsiHKAI GWGCWC 1 cut(s) 194
BsiSI CCGG 6 cut(s) 34, 43, 75, 117, 212, 300
BslI CCNNNNNNNGG 1 cut(s) 315
BsmAI GTCTC 1 cut(s) 64
BsnI GGCC 3 cut(s) 37, 137, 224
Bso31I GGTCTC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 194
Bsp143I GATC 1 cut(s) 325
BspACI CCGC 2 cut(s) 177, 309
BspANI GGCC 3 cut(s) 37, 137, 224
BspCNI CTCAG 1 cut(s) 60
BspLI GGNNCC 3 cut(s) 47, 245, 416
BspPI GGATC 1 cut(s) 333
BspTNI GGTCTC 1 cut(s) 64
BssECI CCNNGG 4 cut(s) 129, 185, 225, 312
BssMI GATC 1 cut(s) 325
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 2 cut(s) 129, 225
Bst2UI CCWGG 1 cut(s) 187
BstACI GRCGYC 1 cut(s) 267
BstC8I GCNNGC 2 cut(s) 20, 182
BstDEI CTNAG 2 cut(s) 68, 219
BstDSI CCRYGG 1 cut(s) 312
BstF5I GGATG 3 cut(s) 33, 204, 260
BstKTI GATC 1 cut(s) 328
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 1 cut(s) 325
BstMWI GCNNNNNNNGC 2 cut(s) 15, 221
BstNI CCWGG 1 cut(s) 187
BstSCI CCNGG 5 cut(s) 42, 73, 185, 210, 299
BstSFI CTRYAG 1 cut(s) 111
BstSLI GKGCMC 1 cut(s) 194
BstV2I GAAGAC 1 cut(s) 297
BsuRI GGCC 3 cut(s) 37, 137, 224
BtgI CCRYGG 1 cut(s) 312
BtsCI GGATG 3 cut(s) 33, 204, 260
Cac8I GCNNGC 2 cut(s) 20, 182
Cfr13I GGNCC 1 cut(s) 46
DdeI CTNAG 2 cut(s) 68, 219
DpnI GATC 1 cut(s) 327
DpnII GATC 1 cut(s) 325
DraIII CACNNNGTG 1 cut(s) 198
EaeI YGGCCR 1 cut(s) 135
EciI GGCGGA 1 cut(s) 298
Eco130I CCWWGG 2 cut(s) 129, 225
Eco31I GGTCTC 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 46
EcoO109I RGGNCCY 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 185
EcoT14I CCWWGG 2 cut(s) 129, 225
ErhI CCWWGG 2 cut(s) 129, 225
FaiI YATR 4 cut(s) 272, 348, 396, 421
FblI GTMKAC 1 cut(s) 335
Fnu4HI GCNGC 1 cut(s) 178
FokI GGATG 3 cut(s) 40, 191, 247
Fsp4HI GCNGC 1 cut(s) 178
FspBI CTAG 1 cut(s) 339
GluI GCNGC 1 cut(s) 178
HaeIII GGCC 3 cut(s) 37, 137, 224
HapII CCGG 6 cut(s) 34, 43, 75, 117, 212, 300
Hin1I GRCGYC 1 cut(s) 267
HinfI GANTC 1 cut(s) 101
HpaII CCGG 6 cut(s) 34, 43, 75, 117, 212, 300
HphI GGTGA 2 cut(s) 100, 118
Hpy166II GTNNAC 4 cut(s) 91, 165, 192, 336
Hpy188I TCNGA 1 cut(s) 265
Hpy8I GTNNAC 4 cut(s) 91, 165, 192, 336
Hpy99I CGWCG 1 cut(s) 269
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 2 cut(s) 192, 398
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 221
HpyF3I CTNAG 2 cut(s) 68, 219
HpySE526I ACGT 1 cut(s) 267
Hsp92I GRCGYC 1 cut(s) 267
Kzo9I GATC 1 cut(s) 325
LmnI GCTCC 2 cut(s) 243, 414
MaeI CTAG 1 cut(s) 339
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 200
MalI GATC 1 cut(s) 327
MboI GATC 1 cut(s) 325
MboII GAAGA 4 cut(s) 16, 297, 383, 386
MhlI GDGCHC 1 cut(s) 194
MlsI TGGCCA 1 cut(s) 137
MluCI AATT 1 cut(s) 293
MluNI TGGCCA 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 1 cut(s) 4
Mox20I TGGCCA 1 cut(s) 137
MscI TGGCCA 1 cut(s) 137
MslI CAYNNNNRTG 1 cut(s) 131
Msp20I TGGCCA 1 cut(s) 137
MspI CCGG 6 cut(s) 34, 43, 75, 117, 212, 300
MspR9I CCNGG 5 cut(s) 44, 75, 187, 212, 301
MvaI CCWGG 1 cut(s) 187
MwoI GCNNNNNNNGC 2 cut(s) 15, 221
NciI CCSGG 4 cut(s) 44, 75, 212, 301
NdeII GATC 1 cut(s) 325
NlaIV GGNNCC 3 cut(s) 47, 245, 416
NmuCI GTSAC 1 cut(s) 200
OliI CACNNNNGTG 1 cut(s) 131
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 179
PpuMI RGGWCCY 1 cut(s) 46
Psp5II RGGWCCY 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
PspN4I GGNNCC 3 cut(s) 47, 245, 416
PspPI GGNCC 1 cut(s) 46
PspPPI RGGWCCY 1 cut(s) 46
RseI CAYNNNNRTG 1 cut(s) 131
SatI GCNGC 1 cut(s) 178
Sau3AI GATC 1 cut(s) 325
Sau96I GGNCC 1 cut(s) 46
ScrFI CCNGG 5 cut(s) 44, 75, 187, 212, 301
SduI GDGCHC 1 cut(s) 194
SetI ASST 6 cut(s) 69, 90, 135, 191, 255, 270
SfcI CTRYAG 1 cut(s) 111
SinI GGWCC 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 131
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
SpeI ACTAGT 1 cut(s) 338
Sse9I AATT 1 cut(s) 293
SsiI CCGC 2 cut(s) 177, 309
SspMI CTAG 1 cut(s) 339
StyD4I CCNGG 5 cut(s) 42, 73, 185, 210, 299
StyI CCWWGG 2 cut(s) 129, 225
TaiI ACGT 1 cut(s) 270
TasI AATT 1 cut(s) 293
TauI GCSGC 1 cut(s) 180
TfiI GAWTC 1 cut(s) 101
TseFI GTSAC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 2 cut(s) 17, 396
VneI GTGCAC 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 46
XapI RAATTY 1 cut(s) 293
XcmI CCANNNNNNNNNTGG 2 cut(s) 283, 319
XmiI GTMKAC 1 cut(s) 335
XspI CTAG 1 cut(s) 339
ZraI GACGTC 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.