AT5G42210
ERF Family

Major Facilitator Superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009793
Physical Location & Seq
Forward (+)
16865770 .. 16870887
5118 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42210.1

Sequence Viewer

Length: 1317 bp
ATGGAGGAAACGACGACCTTCCATGGACTAGGACACCTCTTCATTACAATCTTCTTGTACTGCTTCTCATCATTCATCGTGGCTCCGGTGATAACCGACATCAGCATGGCTGCGCTATGTCCCGGAAAAGACGAGTGTTCTCTCGCCATTTACCTCTCCGGCTTTCAACAAGTTATCACGGGAGTGGGATCATTGATTATGATGCCATTGGTGGGAAGCTTGTCAGACAAGCATGGGAGAAAATGTTTGCTTACTCTTCCAATGACACTCAACATTTTACCTCTTGTGACATTAGCGTATAGTAGAGGGGCAACCATCTTCTACATGTACTATGTACTCAAGACTCTCACTTCGATAGTTTGTGAAGGAAGTGTTCTTTGTCTTGCCCTTGCGTACGTGGCTGATAATGTACCAGAAGGGAGACGAGCCTCCGCATTTGGGATACTTACCGGGATTACATCATGTGCATTCGTTTGCGCCAATCTTTCTGCTCGATTTTTATCTATTGGCGTGACATTTCAGGTTGCAGCAGCAATGGGAATTTTATCAACGTTGTATATGAGGCTTTTCCTACCGGATTCGATCCGAGACAATAGCCTCGGTGCTCCCATTGTTATAAATGAGAAATTGAGTTCTCCTTTACTTGAAGATTGTCCAGGACATAGAAATAGGATATTTAGAGCAATTCGTTTGGTACATGAAATGGCTTCTCTAATGAGAAGTAGCGTTCCACTTTTTCAAGTTGCGATGGTATCATTCTTCAGTAGTCTTGCTGAGGCAGGTCTACATGCTTCATCTATGTACTATTTAAAGGCCAAGTTTCACTTTAACAAAGACCAGTTTGCAGACTTGATGATCATAGTTGGCGCATCTGGATCTATTTCACAGTTGCTCTTTATGCCCGTTCTAGTTCCTGCTTTAAAAGAGGAGAGACTGCTCTCAATTGGTCTTTTCTTTGGTTGTGCCCATATGTTCCTACTATGTGTGGCATGGTCCTCATGGGTTCCATATATGGCAGCCATATTTGCACTTTTCTCAATATTTCCTTCATCGTGTATGCGAAGCATTGTCTCCAAACAAGTAGCATCATATGAACAGGGGAAAGCCCAAGGAATTATTTCAAGCATATGTTCCCTTGCAAATGTCATTTCCCCGCTAGCATTTTCACCTCTAACAGATTGGTTTCTGTCTGAAAGAGCCCCATTTAATTTCCCAGGGTTCAGTATAATGTGTGCGGGATTTGCCATGACTATAGCTTTCATCCAAAGCCTGATGATCAGAGCAGCAACACCAATATCAGTTATGGGATCTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

438

Amino Acids

47.6

Weight (kDa)

8.35

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 13 - 385 1.7e-25 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 617
Acc36I ACCTGC 1 cut(s) 770
AccI GTMKAC 1 cut(s) 784
AciI CCGC 3 cut(s) 432, 1154, 1235
AclI AACGTT 1 cut(s) 551
AclWI GGATC 4 cut(s) 196, 577, 883, 1315
AcsI RAATTY 1 cut(s) 540
AcuI CTGAAG 1 cut(s) 745
AfaI GTAC 7 cut(s) 59, 329, 336, 395, 411, 696, 803
AfiI CCNNNNNNNGG 2 cut(s) 212, 438
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 4 cut(s) 167, 647, 740, 1122
AjnI CCWGG 2 cut(s) 655, 1213
AleI CACNNNNGTG 1 cut(s) 182
AluBI AGCT 2 cut(s) 219, 1256
AluI AGCT 2 cut(s) 219, 1256
Alw21I GWGCWC 1 cut(s) 607
Alw26I GTCTC 4 cut(s) 415, 582, 925, 1075
AlwI GGATC 4 cut(s) 196, 577, 883, 1315
AoxI GGCC 1 cut(s) 813
ApeKI GCWGC 5 cut(s) 110, 527, 530, 1016, 1283
ApoI RAATTY 1 cut(s) 540
ArsI GACNNNNNNTTYG 2 cut(s) 334, 366
Asp700I GAANNNNTTC 1 cut(s) 1117
AspLEI GCGC 3 cut(s) 115, 479, 869
AspS9I GGNCC 1 cut(s) 993
AsuC2I CCSGG 2 cut(s) 123, 451
AsuHPI GGTGA 2 cut(s) 100, 1158
AsuNHI GCTAGC 1 cut(s) 1156
AvaII GGWCC 1 cut(s) 993
BaeGI GKGCMC 1 cut(s) 967
BanII GRGCYC 1 cut(s) 1201
Bbv12I GWGCWC 1 cut(s) 607
BbvCI CCTCAGC 1 cut(s) 774
BbvI GCAGC 5 cut(s) 97, 539, 542, 1028, 1295
BccI CCATC 2 cut(s) 323, 742
BciT130I CCWGG 2 cut(s) 657, 1215
BciVI GTATCC 1 cut(s) 435
BclI TGATCA 2 cut(s) 855, 1275
BcnI CCSGG 2 cut(s) 123, 451
BcoDI GTCTC 4 cut(s) 415, 582, 925, 1075
BfaI CTAG 3 cut(s) 29, 908, 1157
BfmI CTRYAG 1 cut(s) 1251
BfuAI ACCTGC 1 cut(s) 770
BfuI GTATCC 1 cut(s) 435
BisI GCNGC 5 cut(s) 111, 528, 531, 1017, 1284
BlsI GCNGC 5 cut(s) 112, 529, 532, 1018, 1285
Bme1390I CCNGG 4 cut(s) 123, 451, 657, 1215
Bme18I GGWCC 1 cut(s) 993
BmgT120I GGNCC 1 cut(s) 993
BmiI GGNNCC 2 cut(s) 84, 1005
BmrFI CCNGG 4 cut(s) 123, 451, 657, 1215
BmsI GCATC 3 cut(s) 192, 878, 1094
BmtI GCTAGC 1 cut(s) 1160
Bpu10I CCTNAGC 1 cut(s) 774
BpuEI CTTGAG 1 cut(s) 323
BpuMI CCSGG 2 cut(s) 123, 451
BsaAI YACGTR 1 cut(s) 397
BsaBI GATNNNNATC 1 cut(s) 499
BsaJI CCNNGG 5 cut(s) 22, 598, 1108, 1213, 1214
BsaWI WCCGGW 2 cut(s) 85, 574
BsaXI ACNNNNNCTCC 2 cut(s) 229, 259
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 438
Bse1I ACTGG 1 cut(s) 838
Bse3DI GCAATG 1 cut(s) 540
Bse8I GATNNNNATC 1 cut(s) 499
BseBI CCWGG 2 cut(s) 657, 1215
BseDI CCNNGG 5 cut(s) 22, 598, 1108, 1213, 1214
BseGI GGATG 1 cut(s) 1260
BseJI GATNNNNATC 1 cut(s) 499
BseLI CCNNNNNNNGG 2 cut(s) 212, 438
BseMI GCAATG 1 cut(s) 540
BseMII CTCAG 1 cut(s) 765
BseNI ACTGG 1 cut(s) 838
BseRI GAGGAG 1 cut(s) 941
BseSI GKGCMC 1 cut(s) 967
BseXI GCAGC 5 cut(s) 97, 539, 542, 1028, 1295
BshFI GGCC 1 cut(s) 815
BsiHKAI GWGCWC 1 cut(s) 607
BsiSI CCGG 5 cut(s) 86, 123, 159, 450, 575
BsiWI CGTACG 1 cut(s) 393
BslFI GGGAC 1 cut(s) 105
BslI CCNNNNNNNGG 2 cut(s) 212, 438
BsmAI GTCTC 4 cut(s) 415, 582, 925, 1075
BsmBI CGTCTC 1 cut(s) 415
BsmFI GGGAC 1 cut(s) 105
BsmI GAATGC 1 cut(s) 467
BsnI GGCC 1 cut(s) 815
Bsp1286I GDGCHC 3 cut(s) 607, 967, 1201
Bsp143I GATC 6 cut(s) 188, 582, 855, 875, 1275, 1307
Bsp19I CCATGG 1 cut(s) 22
BspACI CCGC 3 cut(s) 432, 1154, 1235
BspANI GGCC 1 cut(s) 815
BspCNI CTCAG 1 cut(s) 766
BspLI GGNNCC 2 cut(s) 84, 1005
BspMI ACCTGC 1 cut(s) 770
BspOI GCTAGC 1 cut(s) 1160
BspPI GGATC 4 cut(s) 196, 577, 883, 1315
BsrDI GCAATG 1 cut(s) 540
BsrI ACTGG 1 cut(s) 838
BssECI CCNNGG 5 cut(s) 22, 598, 1108, 1213, 1214
BssMI GATC 6 cut(s) 188, 582, 855, 875, 1275, 1307
BssT1I CCWWGG 2 cut(s) 22, 1108
Bst2UI CCWGG 2 cut(s) 657, 1215
Bst4CI ACNGT 1 cut(s) 888
Bst6I CTCTTC 2 cut(s) 44, 261
BstBAI YACGTR 1 cut(s) 397
BstC8I GCNNGC 1 cut(s) 1158
BstDEI CTNAG 1 cut(s) 774
BstDSI CCRYGG 1 cut(s) 22
BstF5I GGATG 1 cut(s) 1260
BstHHI GCGC 3 cut(s) 115, 479, 869
BstKTI GATC 6 cut(s) 191, 585, 858, 878, 1278, 1310
BstMAI GTCTC 4 cut(s) 415, 582, 925, 1075
BstMBI GATC 6 cut(s) 188, 582, 855, 875, 1275, 1307
BstMWI GCNNNNNNNGC 4 cut(s) 398, 898, 1025, 1241
BstNI CCWGG 2 cut(s) 657, 1215
BstNSI RCATGY 2 cut(s) 328, 791
BstSCI CCNGG 4 cut(s) 121, 449, 655, 1213
BstSFI CTRYAG 1 cut(s) 1251
BstSLI GKGCMC 1 cut(s) 967
BstV1I GCAGC 5 cut(s) 97, 539, 542, 1028, 1295
BstX2I RGATCY 2 cut(s) 875, 1307
BstYI RGATCY 2 cut(s) 875, 1307
BsuI GTATCC 1 cut(s) 435
BsuRI GGCC 1 cut(s) 815
BtgI CCRYGG 1 cut(s) 22
BtgZI GCGATG 1 cut(s) 761
BtsCI GGATG 1 cut(s) 1260
BveI ACCTGC 1 cut(s) 770
Cac8I GCNNGC 1 cut(s) 1158
CfoI GCGC 3 cut(s) 115, 479, 869
Cfr13I GGNCC 1 cut(s) 993
Csp6I GTAC 7 cut(s) 58, 328, 335, 394, 410, 695, 802
CviQI GTAC 7 cut(s) 58, 328, 335, 394, 410, 695, 802
DdeI CTNAG 1 cut(s) 774
DpnI GATC 6 cut(s) 190, 584, 857, 877, 1277, 1309
DpnII GATC 6 cut(s) 188, 582, 855, 875, 1275, 1307
DraI TTTAAA 2 cut(s) 810, 921
Eam1104I CTCTTC 2 cut(s) 44, 261
EarI CTCTTC 2 cut(s) 44, 261
Eco130I CCWWGG 2 cut(s) 22, 1108
Eco24I GRGCYC 1 cut(s) 1201
Eco47I GGWCC 1 cut(s) 993
Eco57I CTGAAG 1 cut(s) 745
EcoRII CCWGG 2 cut(s) 655, 1213
EcoT14I CCWWGG 2 cut(s) 22, 1108
EcoT38I GRGCYC 1 cut(s) 1201
ErhI CCWWGG 2 cut(s) 22, 1108
Esp3I CGTCTC 1 cut(s) 415
FalI AAGNNNNNCTT 2 cut(s) 809, 841
FaqI GGGAC 1 cut(s) 105
FauI CCCGC 2 cut(s) 1161, 1228
FauNDI CATATG 3 cut(s) 969, 1090, 1127
FbaI TGATCA 2 cut(s) 855, 1275
FblI GTMKAC 1 cut(s) 784
Fnu4HI GCNGC 5 cut(s) 111, 528, 531, 1017, 1284
FokI GGATG 1 cut(s) 1247
FriOI GRGCYC 1 cut(s) 1201
Fsp4HI GCNGC 5 cut(s) 111, 528, 531, 1017, 1284
FspBI CTAG 3 cut(s) 29, 908, 1157
GlaI GCGC 3 cut(s) 114, 478, 868
GluI GCNGC 5 cut(s) 111, 528, 531, 1017, 1284
HaeIII GGCC 1 cut(s) 815
HapII CCGG 5 cut(s) 86, 123, 159, 450, 575
HhaI GCGC 3 cut(s) 115, 479, 869
Hin6I GCGC 3 cut(s) 113, 477, 867
HinP1I GCGC 3 cut(s) 113, 477, 867
HindIII AAGCTT 1 cut(s) 217
HinfI GANTC 2 cut(s) 343, 578
HpaII CCGG 5 cut(s) 86, 123, 159, 450, 575
HphI GGTGA 2 cut(s) 100, 1158
Hpy166II GTNNAC 1 cut(s) 785
Hpy188I TCNGA 4 cut(s) 226, 587, 1192, 1280
Hpy188III TCNNGA 2 cut(s) 340, 873
Hpy8I GTNNAC 1 cut(s) 785
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 4 cut(s) 28, 359, 410, 1056
HpyCH4III ACNGT 1 cut(s) 888
HpyCH4IV ACGT 2 cut(s) 396, 551
HpyCH4V TGCA 5 cut(s) 467, 527, 845, 1028, 1139
HpyF10VI GCNNNNNNNGC 4 cut(s) 398, 898, 1025, 1241
HpyF3I CTNAG 1 cut(s) 774
HpySE526I ACGT 2 cut(s) 396, 551
HspAI GCGC 3 cut(s) 113, 477, 867
Ksp22I TGATCA 2 cut(s) 855, 1275
Kzo9I GATC 6 cut(s) 188, 582, 855, 875, 1275, 1307
LmnI GCTCC 2 cut(s) 88, 610
Lsp1109I GCAGC 5 cut(s) 97, 539, 542, 1028, 1295
LweI GCATC 3 cut(s) 192, 878, 1094
MaeI CTAG 3 cut(s) 29, 908, 1157
MaeII ACGT 2 cut(s) 396, 551
MaeIII GTNAC 2 cut(s) 286, 511
MalI GATC 6 cut(s) 190, 584, 857, 877, 1277, 1309
MboI GATC 6 cut(s) 188, 582, 855, 875, 1275, 1307
MboII GAAGA 6 cut(s) 31, 43, 248, 310, 659, 751
MfeI CAATTG 1 cut(s) 942
MflI RGATCY 2 cut(s) 875, 1307
MhlI GDGCHC 3 cut(s) 607, 967, 1201
MluCI AATT 6 cut(s) 540, 626, 684, 942, 1113, 1207
MlyI GAGTC 1 cut(s) 337
MroXI GAANNNNTTC 1 cut(s) 1117
MseI TTAA 4 cut(s) 809, 828, 920, 1206
MslI CAYNNNNRTG 2 cut(s) 104, 182
MspI CCGG 5 cut(s) 86, 123, 159, 450, 575
MspR9I CCNGG 4 cut(s) 123, 451, 657, 1215
MunI CAATTG 1 cut(s) 942
Mva1269I GAATGC 1 cut(s) 467
MvaI CCWGG 2 cut(s) 657, 1215
MwoI GCNNNNNNNGC 4 cut(s) 398, 898, 1025, 1241
NciI CCSGG 2 cut(s) 123, 451
NcoI CCATGG 1 cut(s) 22
NdeI CATATG 3 cut(s) 969, 1090, 1127
NdeII GATC 6 cut(s) 188, 582, 855, 875, 1275, 1307
NheI GCTAGC 1 cut(s) 1156
NlaIV GGNNCC 2 cut(s) 84, 1005
NmuCI GTSAC 2 cut(s) 286, 511
NspI RCATGY 2 cut(s) 328, 791
OliI CACNNNNGTG 1 cut(s) 182
PasI CCCWGGG 1 cut(s) 1214
PciI ACATGT 1 cut(s) 324
PctI GAATGC 1 cut(s) 467
PdmI GAANNNNTTC 1 cut(s) 1117
PfeI GAWTC 1 cut(s) 578
Pfl23II CGTACG 1 cut(s) 393
PfoI TCCNGGA 2 cut(s) 121, 655
PkrI GCNGC 5 cut(s) 112, 529, 532, 1018, 1285
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
Ppu21I YACGTR 1 cut(s) 397
PscI ACATGT 1 cut(s) 324
PsiI TTATAA 1 cut(s) 617
Psp1406I AACGTT 1 cut(s) 551
Psp6I CCWGG 2 cut(s) 655, 1213
PspGI CCWGG 2 cut(s) 655, 1213
PspLI CGTACG 1 cut(s) 393
PspN4I GGNNCC 2 cut(s) 84, 1005
PspPI GGNCC 1 cut(s) 993
PsuI RGATCY 2 cut(s) 875, 1307
RsaI GTAC 7 cut(s) 59, 329, 336, 395, 411, 696, 803
RsaNI GTAC 7 cut(s) 58, 328, 335, 394, 410, 695, 802
RseI CAYNNNNRTG 2 cut(s) 104, 182
SaqAI TTAA 4 cut(s) 809, 828, 920, 1206
SatI GCNGC 5 cut(s) 111, 528, 531, 1017, 1284
Sau3AI GATC 6 cut(s) 188, 582, 855, 875, 1275, 1307
Sau96I GGNCC 1 cut(s) 993
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 4 cut(s) 123, 451, 657, 1215
SduI GDGCHC 3 cut(s) 607, 967, 1201
SfaNI GCATC 3 cut(s) 192, 878, 1094
SfcI CTRYAG 1 cut(s) 1251
SinI GGWCC 1 cut(s) 993
SmiMI CAYNNNNRTG 2 cut(s) 104, 182
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 6 cut(s) 540, 626, 684, 942, 1113, 1207
SsiI CCGC 3 cut(s) 432, 1154, 1235
SspI AATATT 1 cut(s) 1041
SspMI CTAG 3 cut(s) 29, 908, 1157
StyD4I CCNGG 4 cut(s) 121, 449, 655, 1213
StyI CCWWGG 2 cut(s) 22, 1108
TaaI ACNGT 1 cut(s) 888
TaiI ACGT 2 cut(s) 399, 554
TaqI TCGA 3 cut(s) 353, 493, 581
TasI AATT 6 cut(s) 540, 626, 684, 942, 1113, 1207
TatI WGTACW 4 cut(s) 57, 327, 334, 801
TfiI GAWTC 1 cut(s) 578
Tru1I TTAA 4 cut(s) 809, 828, 920, 1206
Tru9I TTAA 4 cut(s) 809, 828, 920, 1206
TseFI GTSAC 2 cut(s) 286, 511
TseI GCWGC 5 cut(s) 110, 527, 530, 1016, 1283
Tsp45I GTSAC 2 cut(s) 286, 511
TspDTI ATGAA 7 cut(s) 31, 64, 714, 783, 1038, 1107, 1249
VpaK11BI GGWCC 1 cut(s) 993
XapI RAATTY 1 cut(s) 540
XceI RCATGY 2 cut(s) 328, 791
XmiI GTMKAC 1 cut(s) 784
XmnI GAANNNNTTC 1 cut(s) 1117
XspI CTAG 3 cut(s) 29, 908, 1157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.