Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009793

Physical Location & Seq

Genomic Coordinates Reverse (-)

6435252 .. 6443562

Gene Structure 8311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00164470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTTTCAGGTGGCGACAACGCTGGCGGTTGTAGCAGTAATGTACATGAGGATTTTCCTACCGGATTCGATTATAGACGATAACATTTCCGCTCCGTTGCTCTCAAATGAAAACCCTAAAGTTTCGAATTCGGATGAAAATTCAAATGCGGAATTGCAGTCCTCTACAGCTTTACCTTCATTACCTGATATAATCGCATTGTTGAAAACTAGCCCTACATTTTCCCAAGCTGCAATTGTTGCGTTTTTCAGCCATCTGGCCGATGTTGGCCTTCATGCTTCACTATTGTACTATTTAAAGGCCCGGTTTCACTTCAACAAGGATCAGTTTGCTGACCTAATGGTGATTTCGGGGGTTGCAGGCACTATTTCACAGTTGATTCTCATGCCCTTACTGGCTCCTGTTTTAGGAGAGGAGAGGTTACTTTCGATAGGGCTTCTTTTTGGCTGTGCACATATGTTTTTTTATGGCCTTGCGTGGTCCTTCTGGGTTCCGTATGCTGCTGCTATGTTCTCTATCTTTTTTGTGTTTGCACAGCCATGTATGCGAAGCATTGTATCTAAACAAGTTGGGCCGTCTGAGCAGGGAAAGGCTCAAGGGTGCATTTCAGGCATATGCTCCTTTGCAAATGTTATATCTCCCTTTGCTTTCTCTCCTCTAACAGCTTTGTTCCTGTCTGAAAAGGCGCCATTTAATTTTCCTGGTTTTAGTATCACATGCGTTGGATTGGCTGCGATGATAGCCTTTATTCAAAGCGTGATGATAAAGGCTGCTCCTCCTATATCAAGTGAACGGGTCAGCAGCAATTGCAATCACATGGAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

275

Amino Acids

29.71

Weight (kDa)

5.67

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	80 - 248	5.4e-09	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42210 AT5G42210
fragaria_vesca	FvH4_2g37910 FvH4_2g37910
malus_domestica	MD08G1007300.v1.1 MD15G1006500.v1.1
prunus_persica	Prupe.1G359100_v2.0.a1
pyrus_communis	pycom08g00590 pycom15g00510
rosa_chinensis	RchiOBHm_Chr6g0303701
rosa_laevigata	RLG00000011054
rosa_multiflora	Rmu_co8304199.1_g000001 Rmu_sc0014789.1_g000006
rosa_roxburghii	Rroxscaffold_7G00164470
rosa_rugosa	Rorug06G0324100 Rorug06G0324100
rosa_samantha	Rh6AG438400 Rh6BG464700 Rh6CG450700 Rh6DG437400
rosa_wichuraiana	Rw6G037940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	685
AccBSI	CCGCTC	1 cut(s)	92
AciI	CCGC	3 cut(s)	26, 90, 149
AclWI	GGATC	1 cut(s)	330
AcoI	YGGCCR	1 cut(s)	258
AcsI	RAATTY	2 cut(s)	127, 139
AcyI	GRCGYC	1 cut(s)	686
AfaI	GTAC	2 cut(s)	44, 290
AfiI	CCNNNNNNNGG	1 cut(s)	407
AgsI	TTSAA	4 cut(s)	144, 205, 316, 752
AjnI	CCWGG	1 cut(s)	700
AluBI	AGCT	3 cut(s)	170, 230, 665
AluI	AGCT	3 cut(s)	170, 230, 665
Alw21I	GWGCWC	1 cut(s)	454
Alw44I	GTGCAC	1 cut(s)	450
AlwI	GGATC	1 cut(s)	330
AoxI	GGCC	5 cut(s)	258, 268, 300, 469, 572
ApaLI	GTGCAC	1 cut(s)	450
ApeKI	GCWGC	6 cut(s)	230, 500, 503, 731, 770, 801
ApoI	RAATTY	2 cut(s)	127, 139
AspLEI	GCGC	1 cut(s)	688
AspS9I	GGNCC	3 cut(s)	301, 480, 572
AsuC2I	CCSGG	1 cut(s)	304
AsuHPI	GGTGA	1 cut(s)	355
AsuII	TTCGAA	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	480
BaeGI	GKGCMC	1 cut(s)	454
BanI	GGYRCC	1 cut(s)	685
Bbv12I	GWGCWC	1 cut(s)	454
BbvI	GCAGC	6 cut(s)	217, 487, 490, 718, 757, 813
BccI	CCATC	1 cut(s)	261
BceAI	ACGGC	1 cut(s)	559
BciT130I	CCWGG	1 cut(s)	702
BcnI	CCSGG	1 cut(s)	304
BfaI	CTAG	2 cut(s)	210, 826
BfmI	CTRYAG	1 cut(s)	165
BfoI	RGCGCY	1 cut(s)	689
BisI	GCNGC	6 cut(s)	231, 501, 504, 732, 771, 802
BlsI	GCNGC	6 cut(s)	232, 502, 505, 733, 772, 803
Bme1390I	CCNGG	2 cut(s)	304, 702
Bme18I	GGWCC	1 cut(s)	480
BmgT120I	GGNCC	3 cut(s)	301, 480, 572
BmiI	GGNNCC	4 cut(s)	399, 492, 687, 822
BmrFI	CCNGG	2 cut(s)	304, 702
Bpu14I	TTCGAA	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	579
BpuMI	CCSGG	1 cut(s)	304
BsaHI	GRCGYC	1 cut(s)	686
BsaWI	WCCGGW	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	1 cut(s)	407
Bse1I	ACTGG	1 cut(s)	399
BseBI	CCWGG	1 cut(s)	702
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	407
BseMII	CTCAG	1 cut(s)	570
BseNI	ACTGG	1 cut(s)	399
BseRI	GAGGAG	3 cut(s)	428, 645, 765
BseSI	GKGCMC	1 cut(s)	454
BseXI	GCAGC	6 cut(s)	217, 487, 490, 718, 757, 813
BshFI	GGCC	5 cut(s)	260, 270, 302, 471, 574
BshNI	GGYRCC	1 cut(s)	685
BsiHKAI	GWGCWC	1 cut(s)	454
BsiSI	CCGG	2 cut(s)	62, 304
BslI	CCNNNNNNNGG	1 cut(s)	407
BsnI	GGCC	5 cut(s)	260, 270, 302, 471, 574
Bsp119I	TTCGAA	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	454
Bsp1407I	TGTACA	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	322
BspACI	CCGC	3 cut(s)	26, 90, 149
BspANI	GGCC	5 cut(s)	260, 270, 302, 471, 574
BspCNI	CTCAG	1 cut(s)	571
BspLI	GGNNCC	4 cut(s)	399, 492, 687, 822
BspPI	GGATC	1 cut(s)	330
BspT104I	TTCGAA	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	685
BsrBI	CCGCTC	1 cut(s)	92
BsrGI	TGTACA	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	399
BssMI	GATC	1 cut(s)	322
BssNI	GRCGYC	1 cut(s)	686
Bst2UI	CCWGG	1 cut(s)	702
Bst4CI	ACNGT	1 cut(s)	375
BstACI	GRCGYC	1 cut(s)	686
BstAPI	GCANNNNNTGC	2 cut(s)	239, 807
BstAUI	TGTACA	1 cut(s)	42
BstBI	TTCGAA	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	24, 361
BstDEI	CTNAG	1 cut(s)	579
BstENI	CCTNNNNNAGG	1 cut(s)	405
BstF5I	GGATG	1 cut(s)	139
BstH2I	RGCGCY	1 cut(s)	689
BstHHI	GCGC	1 cut(s)	688
BstKTI	GATC	1 cut(s)	325
BstMBI	GATC	1 cut(s)	322
BstMWI	GCNNNNNNNGC	7 cut(s)	32, 239, 544, 580, 609, 740, 807
BstNI	CCWGG	1 cut(s)	702
BstNSI	RCATGY	1 cut(s)	720
BstSCI	CCNGG	2 cut(s)	302, 700
BstSFI	CTRYAG	1 cut(s)	165
BstSLI	GKGCMC	1 cut(s)	454
BstV1I	GCAGC	6 cut(s)	217, 487, 490, 718, 757, 813
BsuRI	GGCC	5 cut(s)	260, 270, 302, 471, 574
BtgZI	GCGATG	1 cut(s)	749
BtsCI	GGATG	1 cut(s)	139
Cac8I	GCNNGC	2 cut(s)	24, 361
CfoI	GCGC	1 cut(s)	688
Cfr13I	GGNCC	3 cut(s)	301, 480, 572
Csp6I	GTAC	2 cut(s)	43, 289
CviAII	CATG	6 cut(s)	46, 275, 385, 540, 717, 817
CviQI	GTAC	2 cut(s)	43, 289
DdeI	CTNAG	1 cut(s)	579
DinI	GGCGCC	1 cut(s)	687
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
DraI	TTTAAA	1 cut(s)	297
EaeI	YGGCCR	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	480
EcoNI	CCTNNNNNAGG	1 cut(s)	405
EcoRI	GAATTC	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	700
EgeI	GGCGCC	1 cut(s)	687
EheI	GGCGCC	1 cut(s)	687
FaeI	CATG	6 cut(s)	49, 278, 388, 543, 720, 820
FatI	CATG	6 cut(s)	45, 274, 384, 539, 716, 816
FauNDI	CATATG	2 cut(s)	456, 614
Fnu4HI	GCNGC	6 cut(s)	231, 501, 504, 732, 771, 802
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	6 cut(s)	231, 501, 504, 732, 771, 802
FspBI	CTAG	2 cut(s)	210, 826
GlaI	GCGC	1 cut(s)	687
GluI	GCNGC	6 cut(s)	231, 501, 504, 732, 771, 802
HaeII	RGCGCY	1 cut(s)	689
HaeIII	GGCC	5 cut(s)	260, 270, 302, 471, 574
HapII	CCGG	2 cut(s)	62, 304
HhaI	GCGC	1 cut(s)	688
Hin1I	GRCGYC	1 cut(s)	686
Hin1II	CATG	6 cut(s)	49, 278, 388, 543, 720, 820
Hin6I	GCGC	1 cut(s)	686
HinP1I	GCGC	1 cut(s)	686
HinfI	GANTC	2 cut(s)	65, 379
HpaII	CCGG	2 cut(s)	62, 304
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	2 cut(s)	452, 791
Hpy188I	TCNGA	3 cut(s)	133, 580, 679
Hpy8I	GTNNAC	2 cut(s)	452, 791
HpyAV	CCTTC	3 cut(s)	186, 281, 493
HpyCH4III	ACNGT	1 cut(s)	375
HpyCH4V	TGCA	8 cut(s)	157, 233, 359, 452, 533, 603, 626, 810
HpyF10VI	GCNNNNNNNGC	7 cut(s)	32, 239, 544, 580, 609, 740, 807
HpyF3I	CTNAG	1 cut(s)	579
Hsp92I	GRCGYC	1 cut(s)	686
Hsp92II	CATG	6 cut(s)	49, 278, 388, 543, 720, 820
HspAI	GCGC	1 cut(s)	686
KasI	GGCGCC	1 cut(s)	685
Kzo9I	GATC	1 cut(s)	322
LmnI	GCTCC	4 cut(s)	97, 403, 623, 778
Lsp1109I	GCAGC	6 cut(s)	217, 487, 490, 718, 757, 813
MaeI	CTAG	2 cut(s)	210, 826
MaeIII	GTNAC	1 cut(s)	420
MalI	GATC	1 cut(s)	324
MbiI	CCGCTC	1 cut(s)	92
MboI	GATC	1 cut(s)	322
MfeI	CAATTG	2 cut(s)	234, 805
MhlI	GDGCHC	1 cut(s)	454
MluCI	AATT	6 cut(s)	127, 139, 152, 234, 694, 805
Mly113I	GGCGCC	1 cut(s)	686
MmeI	TCCRAC	1 cut(s)	703
MnlI	CCTC	6 cut(s)	42, 172, 406, 411, 666, 786
MseI	TTAA	2 cut(s)	296, 693
MslI	CAYNNNNRTG	1 cut(s)	538
MspI	CCGG	2 cut(s)	62, 304
MspR9I	CCNGG	2 cut(s)	304, 702
MunI	CAATTG	2 cut(s)	234, 805
MvaI	CCWGG	1 cut(s)	702
MwoI	GCNNNNNNNGC	7 cut(s)	32, 239, 544, 580, 609, 740, 807
NarI	GGCGCC	1 cut(s)	686
NciI	CCSGG	1 cut(s)	304
NdeI	CATATG	2 cut(s)	456, 614
NdeII	GATC	1 cut(s)	322
NlaIII	CATG	6 cut(s)	49, 278, 388, 543, 720, 820
NlaIV	GGNNCC	4 cut(s)	399, 492, 687, 822
NspI	RCATGY	1 cut(s)	720
NspV	TTCGAA	1 cut(s)	125
PfeI	GAWTC	2 cut(s)	65, 379
PkrI	GCNGC	6 cut(s)	232, 502, 505, 733, 772, 803
PluTI	GGCGCC	1 cut(s)	689
Psp6I	CCWGG	1 cut(s)	700
PspGI	CCWGG	1 cut(s)	700
PspN4I	GGNNCC	4 cut(s)	399, 492, 687, 822
PspPI	GGNCC	3 cut(s)	301, 480, 572
RsaI	GTAC	2 cut(s)	44, 290
RsaNI	GTAC	2 cut(s)	43, 289
RseI	CAYNNNNRTG	1 cut(s)	538
SaqAI	TTAA	2 cut(s)	296, 693
SatI	GCNGC	6 cut(s)	231, 501, 504, 732, 771, 802
Sau3AI	GATC	1 cut(s)	322
Sau96I	GGNCC	3 cut(s)	301, 480, 572
ScrFI	CCNGG	2 cut(s)	304, 702
SduI	GDGCHC	1 cut(s)	454
SetI	ASST	8 cut(s)	12, 172, 178, 187, 232, 339, 422, 667
SfcI	CTRYAG	1 cut(s)	165
SfoI	GGCGCC	1 cut(s)	687
SfuI	TTCGAA	1 cut(s)	125
SinI	GGWCC	1 cut(s)	480
SmiMI	CAYNNNNRTG	1 cut(s)	538
SmlI	CTYRAG	1 cut(s)	594
SmoI	CTYRAG	1 cut(s)	594
Sse9I	AATT	6 cut(s)	127, 139, 152, 234, 694, 805
SsiI	CCGC	3 cut(s)	26, 90, 149
SspDI	GGCGCC	1 cut(s)	685
SspMI	CTAG	2 cut(s)	210, 826
StyD4I	CCNGG	2 cut(s)	302, 700
TaaI	ACNGT	1 cut(s)	375
TaqI	TCGA	3 cut(s)	68, 125, 428
TasI	AATT	6 cut(s)	127, 139, 152, 234, 694, 805
TatI	WGTACW	2 cut(s)	42, 288
TfiI	GAWTC	2 cut(s)	65, 379
Tru1I	TTAA	2 cut(s)	296, 693
Tru9I	TTAA	2 cut(s)	296, 693
TseI	GCWGC	6 cut(s)	230, 500, 503, 731, 770, 801
TspDTI	ATGAA	4 cut(s)	123, 150, 168, 263
TspGWI	ACGGA	2 cut(s)	84, 483
VneI	GTGCAC	1 cut(s)	450
VpaK11BI	GGWCC	1 cut(s)	480
XagI	CCTNNNNNAGG	1 cut(s)	405
XapI	RAATTY	2 cut(s)	127, 139
XceI	RCATGY	1 cut(s)	720
XspI	CTAG	2 cut(s)	210, 826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.