Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0009793

Physical Location & Seq

Genomic Coordinates Forward (+)

62794697 .. 62799998

Gene Structure 5302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG450700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGATGCCTTTGGTAGGGAATCTCTCAGACAAATGTGGGAGAAAAGCTCTGCTCACACTTCCAATGATTTTCACTATAATCCCCTTAGGAATATTAGCCTACAGCAGGACTAGGAATTTCTTCTATGCGTACTTTGTGGCCAAGACTCTCACCGCCATGGTCTGCGAAGGCAGCGTTCACTGCCTCGCCCTTGCCTATGTGGCGGATAATGTTCCAGAAGGACGACGAGCCTCGACGTTTGGAATTCTATCAGGGATTAGTTCCTCTGCCTTCGTCTGCGGAACCCTATTTACTCGTTTTGTATCCACTACCTCAATGTTTCAGGTGGCGACAACGGTGGCGGTTGTAGCAGTGATGTACATGAGGATTTTCCTACCGGATTCGATTATAGACGATAACATTTCCGCTCCATTGCTCTCAAATGAAAACCCAAAAGTTTCGAATTCGAATGAAAATTCAAATGCGGAATTGCAGTCCTCTACAGCTTTACCTTCATTACCTGATATAATCGCATTGTTGAAAACTAGCCCTACATTTTCCCAAGCTGCAATTGTTGCGTTTTTCAGCCATCTGGCCGATGTTGGCCTTCATGCTTCACTATTGTATTATTTAAAGGCCCGGTTTCACTTCAACAAGGATCAGTTTGCTGACCTAATGGTGATTTCGGGGGTTGCAGGCACTATTTCACAGTTGGTTCTCATGCCCTTACTGGCTCCTGTTTTAGGAGAGGAGAGGTTACTTTCGATAGGGCTTCTTTTTGGCTGTGCACATATGTTTTTTTATGGCCTTGCGTGGTCCTTCTGGGTTCCGTATGCTGCTGCGATGTTCTCTATCTTTTTTGTGTTTGCACAGCCATGTATGCGAAGCATTGTATCTAAACAAGTTGGGCCGTCTGAGCAGGGAAAGGCTCAAGGGTGCATTTCAGGCATATGCTCCTTTGCAAATGTTATATCTCCCTTTGCTTTCTCTCCTCTAACAGCTTTGTTCCTGTCTGAAAAGGCGCCATTTAATTTTCCTGGTTTTAGTATCACATGCGTTGGATTTGCTGCGATGATAGCCTTTATTCAAAGCGTGATGATAAAGGCTGCTCCTCCCATATCAAGTGAACAGGTCAGCAGCAATTGCAATTACATGGAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

380

Amino Acids

41.04

Weight (kDa)

7.52

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	2 - 319	6.5e-23	Major Facilitator Superfamily
MFS_1	PF07690	185 - 353	1e-08	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42210 AT5G42210
fragaria_vesca	FvH4_2g37910 FvH4_2g37910
malus_domestica	MD08G1007300.v1.1 MD15G1006500.v1.1
prunus_persica	Prupe.1G359100_v2.0.a1
pyrus_communis	pycom08g00590 pycom15g00510
rosa_chinensis	RchiOBHm_Chr6g0303701
rosa_laevigata	RLG00000011054
rosa_multiflora	Rmu_co8304199.1_g000001 Rmu_sc0014789.1_g000006
rosa_roxburghii	Rroxscaffold_7G00164470
rosa_rugosa	Rorug06G0324100 Rorug06G0324100
rosa_samantha	Rh6AG438400 Rh6BG464700 Rh6CG450700 Rh6DG437400
rosa_wichuraiana	Rw6G037940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1000
AccBSI	CCGCTC	1 cut(s)	407
AciI	CCGC	6 cut(s)	153, 203, 279, 341, 405, 464
AclWI	GGATC	1 cut(s)	645
AcoI	YGGCCR	2 cut(s)	138, 573
AcsI	RAATTY	4 cut(s)	115, 243, 442, 454
AcyI	GRCGYC	1 cut(s)	1001
AfaI	GTAC	2 cut(s)	131, 359
AfiI	CCNNNNNNNGG	3 cut(s)	14, 105, 722
AgsI	TTSAA	4 cut(s)	459, 520, 631, 1067
AjnI	CCWGG	1 cut(s)	1015
AluBI	AGCT	4 cut(s)	47, 485, 545, 980
AluI	AGCT	4 cut(s)	47, 485, 545, 980
Alw21I	GWGCWC	1 cut(s)	769
Alw44I	GTGCAC	1 cut(s)	765
AlwI	GGATC	1 cut(s)	645
AoxI	GGCC	6 cut(s)	138, 573, 583, 615, 784, 887
ApaLI	GTGCAC	1 cut(s)	765
ApeKI	GCWGC	7 cut(s)	171, 545, 815, 818, 1046, 1085, 1116
ApoI	RAATTY	4 cut(s)	115, 243, 442, 454
Asp700I	GAANNNNTTC	1 cut(s)	119
AspLEI	GCGC	1 cut(s)	1003
AspS9I	GGNCC	3 cut(s)	616, 795, 887
AsuC2I	CCSGG	1 cut(s)	619
AsuHPI	GGTGA	2 cut(s)	142, 670
AsuII	TTCGAA	2 cut(s)	440, 446
AvaII	GGWCC	1 cut(s)	795
AxyI	CCTNAGG	1 cut(s)	85
BaeGI	GKGCMC	1 cut(s)	769
BalI	TGGCCA	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	1000
Bbv12I	GWGCWC	1 cut(s)	769
BbvI	GCAGC	7 cut(s)	183, 532, 802, 805, 1033, 1072, 1128
BccI	CCATC	1 cut(s)	576
BceAI	ACGGC	1 cut(s)	874
BciT130I	CCWGG	1 cut(s)	1017
BciVI	GTATCC	1 cut(s)	313
BcnI	CCSGG	1 cut(s)	619
BfaI	CTAG	3 cut(s)	111, 525, 1141
BfmI	CTRYAG	2 cut(s)	100, 480
BfoI	RGCGCY	1 cut(s)	1004
BfuI	GTATCC	1 cut(s)	313
BglI	GCCNNNNNGGC	1 cut(s)	200
BisI	GCNGC	7 cut(s)	172, 546, 816, 819, 1047, 1086, 1117
BlsI	GCNGC	7 cut(s)	173, 547, 817, 820, 1048, 1087, 1118
Bme1390I	CCNGG	2 cut(s)	619, 1017
Bme18I	GGWCC	1 cut(s)	795
BmgT120I	GGNCC	3 cut(s)	616, 795, 887
BmiI	GGNNCC	5 cut(s)	283, 714, 807, 1002, 1137
BmrFI	CCNGG	2 cut(s)	619, 1017
BplI	GAGNNNNNCTC	2 cut(s)	31, 63
Bpu14I	TTCGAA	2 cut(s)	440, 446
BpuEI	CTTGAG	1 cut(s)	894
BpuMI	CCSGG	1 cut(s)	619
BsaHI	GRCGYC	1 cut(s)	1001
BsaJI	CCNNGG	1 cut(s)	156
BsaWI	WCCGGW	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 105, 722
Bse1I	ACTGG	1 cut(s)	714
Bse21I	CCTNAGG	1 cut(s)	85
Bse3DI	GCAATG	1 cut(s)	410
BseBI	CCWGG	1 cut(s)	1017
BseDI	CCNNGG	1 cut(s)	156
BseLI	CCNNNNNNNGG	3 cut(s)	14, 105, 722
BseMI	GCAATG	1 cut(s)	410
BseMII	CTCAG	2 cut(s)	39, 885
BseNI	ACTGG	1 cut(s)	714
BseRI	GAGGAG	3 cut(s)	743, 960, 1080
BseSI	GKGCMC	1 cut(s)	769
BseXI	GCAGC	7 cut(s)	183, 532, 802, 805, 1033, 1072, 1128
BshFI	GGCC	6 cut(s)	140, 575, 585, 617, 786, 889
BshNI	GGYRCC	1 cut(s)	1000
BsiHKAI	GWGCWC	1 cut(s)	769
BsiSI	CCGG	2 cut(s)	377, 619
BslI	CCNNNNNNNGG	3 cut(s)	14, 105, 722
BsnI	GGCC	6 cut(s)	140, 575, 585, 617, 786, 889
Bsp119I	TTCGAA	2 cut(s)	440, 446
Bsp1286I	GDGCHC	1 cut(s)	769
Bsp1407I	TGTACA	1 cut(s)	357
Bsp143I	GATC	1 cut(s)	637
Bsp19I	CCATGG	1 cut(s)	156
BspACI	CCGC	6 cut(s)	153, 203, 279, 341, 405, 464
BspANI	GGCC	6 cut(s)	140, 575, 585, 617, 786, 889
BspCNI	CTCAG	2 cut(s)	38, 886
BspLI	GGNNCC	5 cut(s)	283, 714, 807, 1002, 1137
BspPI	GGATC	1 cut(s)	645
BspT104I	TTCGAA	2 cut(s)	440, 446
BspT107I	GGYRCC	1 cut(s)	1000
BsrBI	CCGCTC	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	410
BsrGI	TGTACA	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	714
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	1 cut(s)	637
BssNI	GRCGYC	1 cut(s)	1001
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	1017
Bst4CI	ACNGT	2 cut(s)	337, 690
BstACI	GRCGYC	1 cut(s)	1001
BstAPI	GCANNNNNTGC	2 cut(s)	554, 1122
BstAUI	TGTACA	1 cut(s)	357
BstBI	TTCGAA	2 cut(s)	440, 446
BstC8I	GCNNGC	1 cut(s)	676
BstDEI	CTNAG	3 cut(s)	25, 85, 894
BstDSI	CCRYGG	1 cut(s)	156
BstENI	CCTNNNNNAGG	3 cut(s)	12, 103, 720
BstH2I	RGCGCY	1 cut(s)	1004
BstHHI	GCGC	1 cut(s)	1003
BstKTI	GATC	1 cut(s)	640
BstMBI	GATC	1 cut(s)	637
BstNI	CCWGG	1 cut(s)	1017
BstNSI	RCATGY	1 cut(s)	1035
BstSCI	CCNGG	2 cut(s)	617, 1015
BstSFI	CTRYAG	2 cut(s)	100, 480
BstSLI	GKGCMC	1 cut(s)	769
BstV1I	GCAGC	7 cut(s)	183, 532, 802, 805, 1033, 1072, 1128
Bsu36I	CCTNAGG	1 cut(s)	85
BsuI	GTATCC	1 cut(s)	313
BsuRI	GGCC	6 cut(s)	140, 575, 585, 617, 786, 889
BtgI	CCRYGG	1 cut(s)	156
BtgZI	GCGATG	2 cut(s)	836, 1064
BtsI	GCAGTG	2 cut(s)	178, 357
BtsIMutI	CAGTG	2 cut(s)	178, 357
Cac8I	GCNNGC	1 cut(s)	676
CfoI	GCGC	1 cut(s)	1003
Cfr13I	GGNCC	3 cut(s)	616, 795, 887
Csp6I	GTAC	2 cut(s)	130, 358
CviAII	CATG	7 cut(s)	157, 361, 590, 700, 855, 1032, 1132
CviQI	GTAC	2 cut(s)	130, 358
DdeI	CTNAG	3 cut(s)	25, 85, 894
DinI	GGCGCC	1 cut(s)	1002
DpnI	GATC	1 cut(s)	639
DpnII	GATC	1 cut(s)	637
DraI	TTTAAA	1 cut(s)	612
EaeI	YGGCCR	2 cut(s)	138, 573
EciI	GGCGGA	1 cut(s)	218
Eco130I	CCWWGG	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	795
Eco81I	CCTNAGG	1 cut(s)	85
EcoNI	CCTNNNNNAGG	3 cut(s)	12, 103, 720
EcoRI	GAATTC	2 cut(s)	243, 442
EcoRII	CCWGG	1 cut(s)	1015
EcoT14I	CCWWGG	1 cut(s)	156
EgeI	GGCGCC	1 cut(s)	1002
EheI	GGCGCC	1 cut(s)	1002
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	7 cut(s)	160, 364, 593, 703, 858, 1035, 1135
FatI	CATG	7 cut(s)	156, 360, 589, 699, 854, 1031, 1131
FauNDI	CATATG	2 cut(s)	771, 929
Fnu4HI	GCNGC	7 cut(s)	172, 546, 816, 819, 1047, 1086, 1117
Fsp4HI	GCNGC	7 cut(s)	172, 546, 816, 819, 1047, 1086, 1117
FspBI	CTAG	3 cut(s)	111, 525, 1141
GlaI	GCGC	1 cut(s)	1002
GluI	GCNGC	7 cut(s)	172, 546, 816, 819, 1047, 1086, 1117
HaeII	RGCGCY	1 cut(s)	1004
HaeIII	GGCC	6 cut(s)	140, 575, 585, 617, 786, 889
HapII	CCGG	2 cut(s)	377, 619
HhaI	GCGC	1 cut(s)	1003
Hin1I	GRCGYC	1 cut(s)	1001
Hin1II	CATG	7 cut(s)	160, 364, 593, 703, 858, 1035, 1135
Hin6I	GCGC	1 cut(s)	1001
HinP1I	GCGC	1 cut(s)	1001
HinfI	GANTC	3 cut(s)	19, 145, 380
HpaII	CCGG	2 cut(s)	377, 619
HphI	GGTGA	2 cut(s)	142, 670
Hpy166II	GTNNAC	3 cut(s)	178, 767, 1106
Hpy188I	TCNGA	3 cut(s)	28, 895, 994
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	3 cut(s)	178, 767, 1106
Hpy99I	CGWCG	2 cut(s)	228, 238
HpyAV	CCTTC	6 cut(s)	161, 212, 280, 501, 596, 808
HpyCH4III	ACNGT	2 cut(s)	337, 690
HpyCH4IV	ACGT	1 cut(s)	236
HpyCH4V	TGCA	8 cut(s)	472, 548, 674, 767, 848, 918, 941, 1125
HpyF3I	CTNAG	3 cut(s)	25, 85, 894
HpySE526I	ACGT	1 cut(s)	236
Hsp92I	GRCGYC	1 cut(s)	1001
Hsp92II	CATG	7 cut(s)	160, 364, 593, 703, 858, 1035, 1135
HspAI	GCGC	1 cut(s)	1001
KasI	GGCGCC	1 cut(s)	1000
Kzo9I	GATC	1 cut(s)	637
LmnI	GCTCC	4 cut(s)	412, 718, 938, 1093
Lsp1109I	GCAGC	7 cut(s)	183, 532, 802, 805, 1033, 1072, 1128
MaeI	CTAG	3 cut(s)	111, 525, 1141
MaeII	ACGT	1 cut(s)	236
MaeIII	GTNAC	1 cut(s)	735
MalI	GATC	1 cut(s)	639
MbiI	CCGCTC	1 cut(s)	407
MboI	GATC	1 cut(s)	637
MboII	GAAGA	1 cut(s)	112
MfeI	CAATTG	2 cut(s)	549, 1120
MhlI	GDGCHC	1 cut(s)	769
MlsI	TGGCCA	1 cut(s)	140
MluCI	AATT	9 cut(s)	115, 243, 442, 454, 467, 549, 1009, 1120, 1126
MluNI	TGGCCA	1 cut(s)	140
Mly113I	GGCGCC	1 cut(s)	1001
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	1 cut(s)	1018
Mox20I	TGGCCA	1 cut(s)	140
MroXI	GAANNNNTTC	1 cut(s)	119
MscI	TGGCCA	1 cut(s)	140
MseI	TTAA	2 cut(s)	611, 1008
MslI	CAYNNNNRTG	2 cut(s)	155, 853
Msp20I	TGGCCA	1 cut(s)	140
MspI	CCGG	2 cut(s)	377, 619
MspR9I	CCNGG	2 cut(s)	619, 1017
MunI	CAATTG	2 cut(s)	549, 1120
MvaI	CCWGG	1 cut(s)	1017
NarI	GGCGCC	1 cut(s)	1001
NciI	CCSGG	1 cut(s)	619
NcoI	CCATGG	1 cut(s)	156
NdeI	CATATG	2 cut(s)	771, 929
NdeII	GATC	1 cut(s)	637
NlaIII	CATG	7 cut(s)	160, 364, 593, 703, 858, 1035, 1135
NlaIV	GGNNCC	5 cut(s)	283, 714, 807, 1002, 1137
NspI	RCATGY	1 cut(s)	1035
NspV	TTCGAA	2 cut(s)	440, 446
PdmI	GAANNNNTTC	1 cut(s)	119
PfeI	GAWTC	2 cut(s)	19, 380
PkrI	GCNGC	7 cut(s)	173, 547, 817, 820, 1048, 1087, 1118
PleI	GAGTC	1 cut(s)	139
PluTI	GGCGCC	1 cut(s)	1004
PpsI	GAGTC	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	1015
PspGI	CCWGG	1 cut(s)	1015
PspN4I	GGNNCC	5 cut(s)	283, 714, 807, 1002, 1137
PspPI	GGNCC	3 cut(s)	616, 795, 887
PsrI	GAACNNNNNNTAC	2 cut(s)	274, 306
RsaI	GTAC	2 cut(s)	131, 359
RsaNI	GTAC	2 cut(s)	130, 358
RseI	CAYNNNNRTG	2 cut(s)	155, 853
SaqAI	TTAA	2 cut(s)	611, 1008
SatI	GCNGC	7 cut(s)	172, 546, 816, 819, 1047, 1086, 1117
Sau3AI	GATC	1 cut(s)	637
Sau96I	GGNCC	3 cut(s)	616, 795, 887
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	2 cut(s)	619, 1017
SduI	GDGCHC	1 cut(s)	769
SfcI	CTRYAG	2 cut(s)	100, 480
SfoI	GGCGCC	1 cut(s)	1002
SfuI	TTCGAA	2 cut(s)	440, 446
SinI	GGWCC	1 cut(s)	795
SmiMI	CAYNNNNRTG	2 cut(s)	155, 853
SmlI	CTYRAG	1 cut(s)	909
SmoI	CTYRAG	1 cut(s)	909
Sse9I	AATT	9 cut(s)	115, 243, 442, 454, 467, 549, 1009, 1120, 1126
SsiI	CCGC	6 cut(s)	153, 203, 279, 341, 405, 464
SspDI	GGCGCC	1 cut(s)	1000
SspI	AATATT	1 cut(s)	93
SspMI	CTAG	3 cut(s)	111, 525, 1141
StyD4I	CCNGG	2 cut(s)	617, 1015
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	2 cut(s)	337, 690
TaiI	ACGT	1 cut(s)	239
TaqI	TCGA	5 cut(s)	233, 383, 440, 446, 743
TasI	AATT	9 cut(s)	115, 243, 442, 454, 467, 549, 1009, 1120, 1126
TatI	WGTACW	1 cut(s)	357
TfiI	GAWTC	2 cut(s)	19, 380
Tru1I	TTAA	2 cut(s)	611, 1008
Tru9I	TTAA	2 cut(s)	611, 1008
TscAI	CASTG	2 cut(s)	185, 357
TseI	GCWGC	7 cut(s)	171, 545, 815, 818, 1046, 1085, 1116
TspDTI	ATGAA	4 cut(s)	438, 465, 483, 578
TspGWI	ACGGA	1 cut(s)	798
TspRI	CASTG	2 cut(s)	185, 357
VneI	GTGCAC	1 cut(s)	765
VpaK11BI	GGWCC	1 cut(s)	795
XagI	CCTNNNNNAGG	3 cut(s)	12, 103, 720
XapI	RAATTY	4 cut(s)	115, 243, 442, 454
XceI	RCATGY	1 cut(s)	1035
XmnI	GAANNNNTTC	1 cut(s)	119
XspI	CTAG	3 cut(s)	111, 525, 1141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.