Hippocampus abundant transcript 1
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G42210 AT5G42210 |
| fragaria_vesca | FvH4_2g37910 FvH4_2g37910 |
| malus_domestica | MD08G1007300.v1.1 MD15G1006500.v1.1 |
| prunus_persica | Prupe.1G359100_v2.0.a1 |
| pyrus_communis | pycom08g00590 pycom15g00510 |
| rosa_chinensis | RchiOBHm_Chr6g0303701 |
| rosa_laevigata | RLG00000011054 |
| rosa_multiflora | Rmu_co8304199.1_g000001 Rmu_sc0014789.1_g000006 |
| rosa_roxburghii | Rroxscaffold_7G00164470 |
| rosa_rugosa | Rorug06G0324100 Rorug06G0324100 |
| rosa_samantha | Rh6AG438400 Rh6BG464700 Rh6CG450700 Rh6DG437400 |
| rosa_wichuraiana | Rw6G037940 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 854 |
| AatII | GACGTC | 1 cut(s) | 530 |
| AccB1I | GGYRCC | 1 cut(s) | 1198 |
| AciI | CCGC | 3 cut(s) | 474, 536, 773 |
| AclWI | GGATC | 3 cut(s) | 73, 256, 843 |
| AcoI | YGGCCR | 2 cut(s) | 84, 333 |
| AcyI | GRCGYC | 2 cut(s) | 527, 1199 |
| AfaI | GTAC | 2 cut(s) | 554, 803 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 40, 209, 920 |
| AgsI | TTSAA | 6 cut(s) | 164, 654, 718, 795, 829, 1265 |
| AjnI | CCWGG | 2 cut(s) | 118, 1213 |
| AluBI | AGCT | 6 cut(s) | 548, 743, 889, 934, 960, 1178 |
| AluI | AGCT | 6 cut(s) | 548, 743, 889, 934, 960, 1178 |
| Alw21I | GWGCWC | 3 cut(s) | 137, 444, 967 |
| Alw26I | GTCTC | 2 cut(s) | 1229, 1300 |
| Alw44I | GTGCAC | 1 cut(s) | 963 |
| AlwI | GGATC | 3 cut(s) | 73, 256, 843 |
| AoxI | GGCC | 4 cut(s) | 28, 84, 333, 781 |
| ApaLI | GTGCAC | 1 cut(s) | 963 |
| ApeKI | GCWGC | 8 cut(s) | 366, 670, 743, 889, 1013, 1016, 1244, 1314 |
| AspLEI | GCGC | 3 cut(s) | 112, 728, 1201 |
| AspS9I | GGNCC | 3 cut(s) | 993, 1003, 1085 |
| AsuC2I | CCSGG | 1 cut(s) | 83 |
| AsuHPI | GGTGA | 1 cut(s) | 88 |
| AvaII | GGWCC | 3 cut(s) | 993, 1003, 1085 |
| BaeGI | GKGCMC | 1 cut(s) | 967 |
| BalI | TGGCCA | 1 cut(s) | 335 |
| BanI | GGYRCC | 1 cut(s) | 1198 |
| BanII | GRGCYC | 1 cut(s) | 661 |
| BauI | CACGAG | 1 cut(s) | 191 |
| Bbv12I | GWGCWC | 3 cut(s) | 137, 444, 967 |
| BbvI | GCAGC | 8 cut(s) | 378, 682, 730, 876, 1000, 1003, 1231, 1326 |
| BccI | CCATC | 3 cut(s) | 146, 847, 1037 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 717, 751 |
| BciT130I | CCWGG | 2 cut(s) | 120, 1215 |
| BcnI | CCSGG | 1 cut(s) | 83 |
| BcoDI | GTCTC | 2 cut(s) | 1229, 1300 |
| BfaI | CTAG | 2 cut(s) | 723, 770 |
| BfoI | RGCGCY | 1 cut(s) | 1202 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 395 |
| BisI | GCNGC | 8 cut(s) | 367, 671, 744, 890, 1014, 1017, 1245, 1315 |
| BlsI | GCNGC | 8 cut(s) | 368, 672, 745, 891, 1015, 1018, 1246, 1316 |
| Bme1390I | CCNGG | 3 cut(s) | 83, 120, 1215 |
| Bme18I | GGWCC | 3 cut(s) | 993, 1003, 1085 |
| BmgT120I | GGNCC | 3 cut(s) | 993, 1003, 1085 |
| BmiI | GGNNCC | 7 cut(s) | 457, 478, 912, 1004, 1005, 1200, 1335 |
| BmrFI | CCNGG | 3 cut(s) | 83, 120, 1215 |
| BmsI | GCATC | 1 cut(s) | 189 |
| BpuEI | CTTGAG | 3 cut(s) | 577, 1092, 1282 |
| BpuMI | CCSGG | 1 cut(s) | 83 |
| BsaHI | GRCGYC | 2 cut(s) | 527, 1199 |
| BsaJI | CCNNGG | 1 cut(s) | 1213 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 40, 209, 920 |
| Bse1I | ACTGG | 1 cut(s) | 160 |
| Bse3DI | GCAATG | 4 cut(s) | 373, 683, 1155, 1318 |
| BseBI | CCWGG | 2 cut(s) | 120, 1215 |
| BseDI | CCNNGG | 1 cut(s) | 1213 |
| BseGI | GGATG | 1 cut(s) | 781 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 40, 209, 920 |
| BseMI | GCAATG | 4 cut(s) | 373, 683, 1155, 1318 |
| BseMII | CTCAG | 6 cut(s) | 234, 459, 627, 654, 899, 1083 |
| BseNI | ACTGG | 1 cut(s) | 160 |
| BseRI | GAGGAG | 2 cut(s) | 941, 1158 |
| BseSI | GKGCMC | 1 cut(s) | 967 |
| BseXI | GCAGC | 8 cut(s) | 378, 682, 730, 876, 1000, 1003, 1231, 1326 |
| BseYI | CCCAGC | 1 cut(s) | 181 |
| BsgI | GTGCAG | 1 cut(s) | 38 |
| Bsh1285I | CGRYCG | 1 cut(s) | 174 |
| BshFI | GGCC | 4 cut(s) | 30, 86, 335, 783 |
| BshNI | GGYRCC | 1 cut(s) | 1198 |
| BsiEI | CGRYCG | 1 cut(s) | 174 |
| BsiHKAI | GWGCWC | 3 cut(s) | 137, 444, 967 |
| BsiSI | CCGG | 3 cut(s) | 83, 301, 572 |
| BslFI | GGGAC | 2 cut(s) | 989, 1271 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 40, 209, 920 |
| BsmAI | GTCTC | 2 cut(s) | 1229, 1300 |
| BsmBI | CGTCTC | 1 cut(s) | 1300 |
| BsmFI | GGGAC | 2 cut(s) | 989, 1271 |
| BsmI | GAATGC | 1 cut(s) | 464 |
| BsnI | GGCC | 4 cut(s) | 30, 86, 335, 783 |
| Bsp1286I | GDGCHC | 4 cut(s) | 137, 444, 661, 967 |
| Bsp143I | GATC | 4 cut(s) | 78, 171, 261, 835 |
| BspACI | CCGC | 3 cut(s) | 474, 536, 773 |
| BspANI | GGCC | 4 cut(s) | 30, 86, 335, 783 |
| BspCNI | CTCAG | 6 cut(s) | 233, 458, 626, 653, 898, 1084 |
| BspLI | GGNNCC | 7 cut(s) | 457, 478, 912, 1004, 1005, 1200, 1335 |
| BspPI | GGATC | 3 cut(s) | 73, 256, 843 |
| BspQI | GCTCTTC | 1 cut(s) | 408 |
| BspT107I | GGYRCC | 1 cut(s) | 1198 |
| BsrDI | GCAATG | 4 cut(s) | 373, 683, 1155, 1318 |
| BsrI | ACTGG | 1 cut(s) | 160 |
| BssECI | CCNNGG | 1 cut(s) | 1213 |
| BssMI | GATC | 4 cut(s) | 78, 171, 261, 835 |
| BssNI | GRCGYC | 2 cut(s) | 527, 1199 |
| BssSI | CACGAG | 1 cut(s) | 191 |
| Bst2BI | CACGAG | 1 cut(s) | 191 |
| Bst2UI | CCWGG | 2 cut(s) | 120, 1215 |
| Bst4CI | ACNGT | 1 cut(s) | 253 |
| Bst6I | CTCTTC | 3 cut(s) | 41, 118, 408 |
| BstACI | GRCGYC | 2 cut(s) | 527, 1199 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 752, 1320 |
| BstC8I | GCNNGC | 4 cut(s) | 675, 741, 874, 909 |
| BstDEI | CTNAG | 6 cut(s) | 220, 445, 613, 640, 885, 1092 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 207, 918 |
| BstF5I | GGATG | 1 cut(s) | 781 |
| BstH2I | RGCGCY | 1 cut(s) | 1202 |
| BstHHI | GCGC | 3 cut(s) | 112, 728, 1201 |
| BstKTI | GATC | 4 cut(s) | 81, 174, 264, 838 |
| BstMAI | GTCTC | 2 cut(s) | 1229, 1300 |
| BstMBI | GATC | 4 cut(s) | 78, 171, 261, 835 |
| BstMCI | CGRYCG | 1 cut(s) | 174 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 253, 375, 395, 752, 898, 1122, 1253, 1320 |
| BstNI | CCWGG | 2 cut(s) | 120, 1215 |
| BstSCI | CCNGG | 3 cut(s) | 81, 118, 1213 |
| BstSLI | GKGCMC | 1 cut(s) | 967 |
| BstV1I | GCAGC | 8 cut(s) | 378, 682, 730, 876, 1000, 1003, 1231, 1326 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 73 |
| BsuRI | GGCC | 4 cut(s) | 30, 86, 335, 783 |
| BtgZI | GCGATG | 2 cut(s) | 124, 1262 |
| BtsCI | GGATG | 1 cut(s) | 781 |
| BtsI | GCAGTG | 1 cut(s) | 345 |
| BtsIMutI | CAGTG | 3 cut(s) | 153, 258, 345 |
| Cac8I | GCNNGC | 4 cut(s) | 675, 741, 874, 909 |
| CfoI | GCGC | 3 cut(s) | 112, 728, 1201 |
| Cfr13I | GGNCC | 3 cut(s) | 993, 1003, 1085 |
| CseI | GACGC | 1 cut(s) | 358 |
| Csp6I | GTAC | 2 cut(s) | 553, 802 |
| CviAII | CATG | 8 cut(s) | 40, 352, 698, 788, 898, 1021, 1053, 1330 |
| CviQI | GTAC | 2 cut(s) | 553, 802 |
| DdeI | CTNAG | 6 cut(s) | 220, 445, 613, 640, 885, 1092 |
| DinI | GGCGCC | 1 cut(s) | 1200 |
| DpnI | GATC | 4 cut(s) | 80, 173, 263, 837 |
| DpnII | GATC | 4 cut(s) | 78, 171, 261, 835 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 854 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 854 |
| EaeI | YGGCCR | 2 cut(s) | 84, 333 |
| Eam1104I | CTCTTC | 3 cut(s) | 41, 118, 408 |
| EarI | CTCTTC | 3 cut(s) | 41, 118, 408 |
| Eco24I | GRGCYC | 1 cut(s) | 661 |
| Eco47I | GGWCC | 3 cut(s) | 993, 1003, 1085 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 207, 918 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1003 |
| EcoRII | CCWGG | 2 cut(s) | 118, 1213 |
| EcoT38I | GRGCYC | 1 cut(s) | 661 |
| EgeI | GGCGCC | 1 cut(s) | 1200 |
| EheI | GGCGCC | 1 cut(s) | 1200 |
| Esp3I | CGTCTC | 1 cut(s) | 1300 |
| FaeI | CATG | 8 cut(s) | 43, 355, 701, 791, 901, 1024, 1056, 1333 |
| FaqI | GGGAC | 2 cut(s) | 989, 1271 |
| FatI | CATG | 8 cut(s) | 39, 351, 697, 787, 897, 1020, 1052, 1329 |
| FauNDI | CATATG | 3 cut(s) | 969, 1009, 1127 |
| Fnu4HI | GCNGC | 8 cut(s) | 367, 671, 744, 890, 1014, 1017, 1245, 1315 |
| FokI | GGATG | 1 cut(s) | 788 |
| FriOI | GRGCYC | 1 cut(s) | 661 |
| Fsp4HI | GCNGC | 8 cut(s) | 367, 671, 744, 890, 1014, 1017, 1245, 1315 |
| FspBI | CTAG | 2 cut(s) | 723, 770 |
| GlaI | GCGC | 3 cut(s) | 111, 727, 1200 |
| GluI | GCNGC | 8 cut(s) | 367, 671, 744, 890, 1014, 1017, 1245, 1315 |
| GsaI | CCCAGC | 1 cut(s) | 185 |
| HaeII | RGCGCY | 1 cut(s) | 1202 |
| HaeIII | GGCC | 4 cut(s) | 30, 86, 335, 783 |
| HapII | CCGG | 3 cut(s) | 83, 301, 572 |
| HgaI | GACGC | 1 cut(s) | 358 |
| HhaI | GCGC | 3 cut(s) | 112, 728, 1201 |
| Hin1I | GRCGYC | 2 cut(s) | 527, 1199 |
| Hin1II | CATG | 8 cut(s) | 43, 355, 701, 791, 901, 1024, 1056, 1333 |
| Hin6I | GCGC | 3 cut(s) | 110, 726, 1199 |
| HinP1I | GCGC | 3 cut(s) | 110, 726, 1199 |
| HincII | GTYRAC | 1 cut(s) | 1304 |
| HindII | GTYRAC | 1 cut(s) | 1304 |
| HinfI | GANTC | 4 cut(s) | 214, 575, 638, 948 |
| HpaII | CCGG | 3 cut(s) | 83, 301, 572 |
| HphI | GGTGA | 1 cut(s) | 88 |
| Hpy166II | GTNNAC | 2 cut(s) | 965, 1304 |
| Hpy188I | TCNGA | 6 cut(s) | 223, 437, 616, 643, 1093, 1192 |
| Hpy188III | TCNNGA | 1 cut(s) | 193 |
| Hpy8I | GTNNAC | 2 cut(s) | 965, 1304 |
| Hpy99I | CGWCG | 4 cut(s) | 98, 423, 529, 532 |
| HpyAV | CCTTC | 5 cut(s) | 356, 699, 794, 1006, 1096 |
| HpyCH4III | ACNGT | 1 cut(s) | 253 |
| HpyCH4IV | ACGT | 3 cut(s) | 96, 431, 527 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 253, 375, 395, 752, 898, 1122, 1253, 1320 |
| HpyF3I | CTNAG | 6 cut(s) | 220, 445, 613, 640, 885, 1092 |
| HpySE526I | ACGT | 3 cut(s) | 96, 431, 527 |
| Hsp92I | GRCGYC | 2 cut(s) | 527, 1199 |
| Hsp92II | CATG | 8 cut(s) | 43, 355, 701, 791, 901, 1024, 1056, 1333 |
| HspAI | GCGC | 3 cut(s) | 110, 726, 1199 |
| KasI | GGCGCC | 1 cut(s) | 1198 |
| KflI | GGGWCCC | 1 cut(s) | 1003 |
| Kzo9I | GATC | 4 cut(s) | 78, 171, 261, 835 |
| LguI | GCTCTTC | 1 cut(s) | 408 |
| LmnI | GCTCC | 3 cut(s) | 140, 607, 916 |
| Lsp1109I | GCAGC | 8 cut(s) | 378, 682, 730, 876, 1000, 1003, 1231, 1326 |
| LweI | GCATC | 1 cut(s) | 189 |
| MaeI | CTAG | 2 cut(s) | 723, 770 |
| MaeII | ACGT | 3 cut(s) | 96, 431, 527 |
| MaeIII | GTNAC | 2 cut(s) | 97, 293 |
| MalI | GATC | 4 cut(s) | 80, 173, 263, 837 |
| MboI | GATC | 4 cut(s) | 78, 171, 261, 835 |
| MboII | GAAGA | 3 cut(s) | 28, 135, 425 |
| MfeI | CAATTG | 1 cut(s) | 747 |
| MhlI | GDGCHC | 4 cut(s) | 137, 444, 661, 967 |
| MlsI | TGGCCA | 1 cut(s) | 335 |
| MluCI | AATT | 4 cut(s) | 270, 630, 747, 1207 |
| MluNI | TGGCCA | 1 cut(s) | 335 |
| Mly113I | GGCGCC | 1 cut(s) | 1199 |
| MlyI | GAGTC | 2 cut(s) | 632, 942 |
| MmeI | TCCRAC | 1 cut(s) | 603 |
| Mox20I | TGGCCA | 1 cut(s) | 335 |
| MscI | TGGCCA | 1 cut(s) | 335 |
| MseI | TTAA | 3 cut(s) | 704, 809, 1206 |
| MslI | CAYNNNNRTG | 3 cut(s) | 71, 350, 1328 |
| Msp20I | TGGCCA | 1 cut(s) | 335 |
| MspA1I | CMGCKG | 1 cut(s) | 889 |
| MspI | CCGG | 3 cut(s) | 83, 301, 572 |
| MspR9I | CCNGG | 3 cut(s) | 83, 120, 1215 |
| MunI | CAATTG | 1 cut(s) | 747 |
| Mva1269I | GAATGC | 1 cut(s) | 464 |
| MvaI | CCWGG | 2 cut(s) | 120, 1215 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 253, 375, 395, 752, 898, 1122, 1253, 1320 |
| NarI | GGCGCC | 1 cut(s) | 1199 |
| NciI | CCSGG | 1 cut(s) | 83 |
| NdeI | CATATG | 3 cut(s) | 969, 1009, 1127 |
| NdeII | GATC | 4 cut(s) | 78, 171, 261, 835 |
| NlaIII | CATG | 8 cut(s) | 43, 355, 701, 791, 901, 1024, 1056, 1333 |
| NlaIV | GGNNCC | 7 cut(s) | 457, 478, 912, 1004, 1005, 1200, 1335 |
| PciSI | GCTCTTC | 1 cut(s) | 408 |
| PctI | GAATGC | 1 cut(s) | 464 |
| PfeI | GAWTC | 2 cut(s) | 214, 575 |
| PfoI | TCCNGGA | 1 cut(s) | 118 |
| PkrI | GCNGC | 8 cut(s) | 368, 672, 745, 891, 1015, 1018, 1246, 1316 |
| Ple19I | CGATCG | 1 cut(s) | 174 |
| PleI | GAGTC | 2 cut(s) | 632, 942 |
| PluTI | GGCGCC | 1 cut(s) | 1202 |
| PpsI | GAGTC | 2 cut(s) | 632, 942 |
| PpuMI | RGGWCCY | 1 cut(s) | 1003 |
| Psp5II | RGGWCCY | 1 cut(s) | 1003 |
| Psp6I | CCWGG | 2 cut(s) | 118, 1213 |
| PspFI | CCCAGC | 1 cut(s) | 181 |
| PspGI | CCWGG | 2 cut(s) | 118, 1213 |
| PspN4I | GGNNCC | 7 cut(s) | 457, 478, 912, 1004, 1005, 1200, 1335 |
| PspPI | GGNCC | 3 cut(s) | 993, 1003, 1085 |
| PspPPI | RGGWCCY | 1 cut(s) | 1003 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 469, 501 |
| PvuI | CGATCG | 1 cut(s) | 174 |
| PvuII | CAGCTG | 1 cut(s) | 889 |
| RsaI | GTAC | 2 cut(s) | 554, 803 |
| RsaNI | GTAC | 2 cut(s) | 553, 802 |
| RseI | CAYNNNNRTG | 3 cut(s) | 71, 350, 1328 |
| SapI | GCTCTTC | 1 cut(s) | 408 |
| SaqAI | TTAA | 3 cut(s) | 704, 809, 1206 |
| SatI | GCNGC | 8 cut(s) | 367, 671, 744, 890, 1014, 1017, 1245, 1315 |
| Sau3AI | GATC | 4 cut(s) | 78, 171, 261, 835 |
| Sau96I | GGNCC | 3 cut(s) | 993, 1003, 1085 |
| SchI | GAGTC | 2 cut(s) | 632, 942 |
| ScrFI | CCNGG | 3 cut(s) | 83, 120, 1215 |
| SduI | GDGCHC | 4 cut(s) | 137, 444, 661, 967 |
| SfaNI | GCATC | 1 cut(s) | 189 |
| SfoI | GGCGCC | 1 cut(s) | 1200 |
| SinI | GGWCC | 3 cut(s) | 993, 1003, 1085 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 71, 350, 1328 |
| SmlI | CTYRAG | 3 cut(s) | 556, 1107, 1297 |
| SmoI | CTYRAG | 3 cut(s) | 556, 1107, 1297 |
| Sse9I | AATT | 4 cut(s) | 270, 630, 747, 1207 |
| SsiI | CCGC | 3 cut(s) | 474, 536, 773 |
| SspDI | GGCGCC | 1 cut(s) | 1198 |
| SspI | AATATT | 1 cut(s) | 666 |
| SspMI | CTAG | 2 cut(s) | 723, 770 |
| StyD4I | CCNGG | 3 cut(s) | 81, 118, 1213 |
| TaaI | ACNGT | 1 cut(s) | 253 |
| TaiI | ACGT | 3 cut(s) | 99, 434, 530 |
| TaqI | TCGA | 1 cut(s) | 941 |
| TasI | AATT | 4 cut(s) | 270, 630, 747, 1207 |
| TatI | WGTACW | 2 cut(s) | 552, 801 |
| TfiI | GAWTC | 2 cut(s) | 214, 575 |
| Tru1I | TTAA | 3 cut(s) | 704, 809, 1206 |
| Tru9I | TTAA | 3 cut(s) | 704, 809, 1206 |
| TscAI | CASTG | 3 cut(s) | 160, 258, 352 |
| TseI | GCWGC | 8 cut(s) | 366, 670, 743, 889, 1013, 1016, 1244, 1314 |
| TspDTI | ATGAA | 5 cut(s) | 28, 633, 660, 681, 776 |
| TspGWI | ACGGA | 1 cut(s) | 1077 |
| TspRI | CASTG | 3 cut(s) | 160, 258, 352 |
| VneI | GTGCAC | 1 cut(s) | 963 |
| VpaK11BI | GGWCC | 3 cut(s) | 993, 1003, 1085 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 207, 918 |
| XspI | CTAG | 2 cut(s) | 723, 770 |
| ZraI | GACGTC | 1 cut(s) | 528 |