Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009793

Physical Location & Seq

Genomic Coordinates Reverse (-)

358246 .. 363750

Gene Structure 5505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1006500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGAAAGGCTTTCGGCAGGGTTGAGCCACCTCTTCATGACAGTCTTTCTGCACAACTTCGCCACGTTCATGGTGATCCCGGCCATCACCGACGTTACAATGTCTGCCCTTTGTCCTGGAAGAGATGAGTGCTCCATCGCTATCTACCTCACCGGATTTCAACAAGCGATCGTAGGGCTGGGAACACTAGTGATGATGCCATTGGTAGGTAATCTCTCAGACAAGTGTGGAAGAAAAGCTTTGCTTACACTGCCAATGATCTCCACAATTATCCCCTTGGGGATATTGGGATACAGCAGGAGTAAGAGTTTCTTCTACGTCTACTTCGCGGTCAAAACTCTAACCGCCATGCTTTGTGAAGGCAGCGTTCAGTGCCTCGCCCTTGCCTATGTGGCAGATAATGTGGCAGAAGGGCGGCGAGCCTCGACGTTCGGAGTCCTATCGGGGATTAGTTCCTCTGCATTTGTCTGCGGAACCTTATTCACTCGTTTCGTCTCCACTTCCTCCGCTTTTCAGGTTGCGACAGTGGTGGCGGTTGTGGCAGTAATGTACATGAGGGTTTTCCTACCGGATTCCAACAGAGACAATAACCTTTCCGCTCCGTTACTGTCGGATGAAAAGATCAAAATTAAGGATTCAGCTGAAAGTTCAAGTGCTCAGATATTGCAGCCAGCCAAAACATTGCCTTCCTTAAGTGATTTTATCTCCTTATTGAAAACCAGCACGACGTTTTCGCAAGCTGCAATTGTTGCGTTTTTCAGTAATCTTGCGGATGTTGGCCTTCATGCTTCAATGATGTACTTTCTAAAGGCGCGGTTTCACTTCAACAAGGATCAGTTTGCGGACCTGATGGTTATTTCCGGGGTAGCAGGCACCGTTTCACAGCTGGTTCTAATGCCCTTGCTGGCTCCGGCTTTAGGAGAGGAAAGGCTACTTTCGATAGGCCTCCTTTTTAGCTGTGCACATATGTTTCTTTATGGCATTGCGTGGTCCTTCTGGGTGCCATATGCTGCTGCCATGTTTTCCATCTTTTTTGTGTTCGCACAACCATGCATGCGAAGCATTGTATCGAAACAAATTGGTCCGTCCGAGCAGGGGAAGGCTCAAGGATGCATTTCAGGCATATGTTCACTTGCAAATGTGATATCTCCGATTGCTTTCTCTCCTCTCACAGCTTTGTTTCTGTCCGAAAAGGCACCCTTTAATTTCCCTGGATTTAGTCTCATTTGCGTTGGATTTGCTGCGATGATAGCCTTTATTCAAAGCGTGATGATAAGGGCTGCTCCTTCCCTTTCGAGCCAACGGAACAGCGGCAATTGCAATCACACGGAGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

446

Amino Acids

47.83

Weight (kDa)

8.56

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	11 - 384	8.1e-27	Major Facilitator Superfamily
MFS_1	PF07690	250 - 419	5.6e-09	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42210 AT5G42210
fragaria_vesca	FvH4_2g37910 FvH4_2g37910
malus_domestica	MD08G1007300.v1.1 MD15G1006500.v1.1
prunus_persica	Prupe.1G359100_v2.0.a1
pyrus_communis	pycom08g00590 pycom15g00510
rosa_chinensis	RchiOBHm_Chr6g0303701
rosa_laevigata	RLG00000011054
rosa_multiflora	Rmu_co8304199.1_g000001 Rmu_sc0014789.1_g000006
rosa_roxburghii	Rroxscaffold_7G00164470
rosa_rugosa	Rorug06G0324100 Rorug06G0324100
rosa_samantha	Rh6AG438400 Rh6BG464700 Rh6CG450700 Rh6DG437400
rosa_wichuraiana	Rw6G037940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	872, 1000, 1195
AccBSI	CCGCTC	1 cut(s)	599
AccI	GTMKAC	1 cut(s)	321
AccII	CGCG	2 cut(s)	329, 814
AclWI	GGATC	2 cut(s)	70, 840
AcoI	YGGCCR	1 cut(s)	81
AfaI	GTAC	2 cut(s)	551, 800
AfiI	CCNNNNNNNGG	3 cut(s)	206, 917, 1095
AflII	CTTAAG	1 cut(s)	691
AgsI	TTSAA	6 cut(s)	161, 651, 715, 792, 826, 1262
AhlI	ACTAGT	1 cut(s)	187
AjnI	CCWGG	2 cut(s)	115, 1210
AluBI	AGCT	6 cut(s)	239, 641, 740, 886, 957, 1175
AluI	AGCT	6 cut(s)	239, 641, 740, 886, 957, 1175
Alw21I	GWGCWC	3 cut(s)	134, 658, 964
Alw26I	GTCTC	3 cut(s)	499, 576, 1226
Alw44I	GTGCAC	1 cut(s)	960
AlwI	GGATC	2 cut(s)	70, 840
AoxI	GGCC	3 cut(s)	81, 778, 943
ApaLI	GTGCAC	1 cut(s)	960
ApeKI	GCWGC	7 cut(s)	363, 667, 740, 1010, 1013, 1241, 1280
AspLEI	GCGC	1 cut(s)	814
AspS9I	GGNCC	3 cut(s)	844, 990, 1082
AsuC2I	CCSGG	2 cut(s)	80, 862
AsuHPI	GGTGA	3 cut(s)	79, 85, 142
AvaII	GGWCC	3 cut(s)	844, 990, 1082
BaeGI	GKGCMC	1 cut(s)	964
BanI	GGYRCC	3 cut(s)	872, 1000, 1195
BanII	GRGCYC	1 cut(s)	1335
Bbv12I	GWGCWC	3 cut(s)	134, 658, 964
BbvI	GCAGC	7 cut(s)	375, 679, 727, 997, 1000, 1228, 1267
BccI	CCATC	4 cut(s)	92, 143, 844, 1034
BciT130I	CCWGG	2 cut(s)	117, 1212
BciVI	GTATCC	1 cut(s)	284
BcnI	CCSGG	2 cut(s)	80, 862
BcoDI	GTCTC	3 cut(s)	499, 576, 1226
BcuI	ACTAGT	1 cut(s)	187
BfaI	CTAG	2 cut(s)	188, 1336
BfrI	CTTAAG	1 cut(s)	691
BfuI	GTATCC	1 cut(s)	284
BglI	GCCNNNNNGGC	1 cut(s)	392
BisI	GCNGC	9 cut(s)	364, 416, 668, 741, 1011, 1014, 1242, 1281, 1312
BlsI	GCNGC	9 cut(s)	365, 417, 669, 742, 1012, 1015, 1243, 1282, 1313
Bme1390I	CCNGG	4 cut(s)	80, 117, 862, 1212
Bme18I	GGWCC	3 cut(s)	844, 990, 1082
BmgT120I	GGNCC	3 cut(s)	844, 990, 1082
BmiI	GGNNCC	6 cut(s)	475, 874, 909, 1002, 1197, 1332
BmrFI	CCNGG	4 cut(s)	80, 117, 862, 1212
BmsI	GCATC	2 cut(s)	186, 1100
BpuEI	CTTGAG	1 cut(s)	1089
BpuMI	CCSGG	2 cut(s)	80, 862
BsaJI	CCNNGG	3 cut(s)	276, 861, 1210
BsaWI	WCCGGW	2 cut(s)	152, 568
BsaXI	ACNNNNNCTCC	2 cut(s)	292, 322
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 917, 1095
Bse3DI	GCAATG	2 cut(s)	680, 981
BseBI	CCWGG	2 cut(s)	117, 1212
BseDI	CCNNGG	3 cut(s)	276, 861, 1210
BseGI	GGATG	3 cut(s)	619, 778, 1115
BseLI	CCNNNNNNNGG	3 cut(s)	206, 917, 1095
BseMI	GCAATG	2 cut(s)	680, 981
BseMII	CTCAG	2 cut(s)	231, 671
BseRI	GAGGAG	1 cut(s)	1155
BseSI	GKGCMC	1 cut(s)	964
BseXI	GCAGC	7 cut(s)	375, 679, 727, 997, 1000, 1228, 1267
BseYI	CCCAGC	1 cut(s)	178
BsgI	GTGCAG	1 cut(s)	35
Bsh1236I	CGCG	2 cut(s)	329, 814
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	3 cut(s)	83, 780, 945
BshNI	GGYRCC	3 cut(s)	872, 1000, 1195
BsiEI	CGRYCG	1 cut(s)	171
BsiHKAI	GWGCWC	3 cut(s)	134, 658, 964
BsiSI	CCGG	5 cut(s)	80, 153, 569, 861, 911
BslI	CCNNNNNNNGG	3 cut(s)	206, 917, 1095
BsmAI	GTCTC	3 cut(s)	499, 576, 1226
BsmBI	CGTCTC	1 cut(s)	499
BsnI	GGCC	3 cut(s)	83, 780, 945
Bsp1286I	GDGCHC	4 cut(s)	134, 658, 964, 1335
Bsp1407I	TGTACA	1 cut(s)	549
Bsp143I	GATC	5 cut(s)	75, 168, 258, 621, 832
BspANI	GGCC	3 cut(s)	83, 780, 945
BspCNI	CTCAG	2 cut(s)	230, 670
BspFNI	CGCG	2 cut(s)	329, 814
BspHI	TCATGA	1 cut(s)	36
BspLI	GGNNCC	6 cut(s)	475, 874, 909, 1002, 1197, 1332
BspPI	GGATC	2 cut(s)	70, 840
BspT107I	GGYRCC	3 cut(s)	872, 1000, 1195
BspTI	CTTAAG	1 cut(s)	691
BsrBI	CCGCTC	1 cut(s)	599
BsrDI	GCAATG	2 cut(s)	680, 981
BsrGI	TGTACA	1 cut(s)	549
BssECI	CCNNGG	3 cut(s)	276, 861, 1210
BssMI	GATC	5 cut(s)	75, 168, 258, 621, 832
BssT1I	CCWWGG	1 cut(s)	276
Bst2UI	CCWGG	2 cut(s)	117, 1212
Bst4CI	ACNGT	4 cut(s)	43, 526, 609, 877
Bst6I	CTCTTC	2 cut(s)	38, 115
BstAFI	CTTAAG	1 cut(s)	691
BstAPI	GCANNNNNTGC	1 cut(s)	749
BstAUI	TGTACA	1 cut(s)	549
BstC8I	GCNNGC	6 cut(s)	420, 672, 738, 871, 906, 1055
BstDEI	CTNAG	2 cut(s)	217, 657
BstF5I	GGATG	3 cut(s)	619, 778, 1115
BstFNI	CGCG	2 cut(s)	329, 814
BstHHI	GCGC	1 cut(s)	814
BstKTI	GATC	5 cut(s)	78, 171, 261, 624, 835
BstMAI	GTCTC	3 cut(s)	499, 576, 1226
BstMBI	GATC	5 cut(s)	75, 168, 258, 621, 832
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	9 cut(s)	250, 372, 392, 539, 749, 1059, 1119, 1250, 1317
BstNI	CCWGG	2 cut(s)	117, 1212
BstNSI	RCATGY	1 cut(s)	1057
BstSCI	CCNGG	4 cut(s)	78, 115, 860, 1210
BstSLI	GKGCMC	1 cut(s)	964
BstUI	CGCG	2 cut(s)	329, 814
BstV1I	GCAGC	7 cut(s)	375, 679, 727, 997, 1000, 1228, 1267
BstXI	CCANNNNNNTGG	1 cut(s)	70
BsuI	GTATCC	1 cut(s)	284
BsuRI	GGCC	3 cut(s)	83, 780, 945
BtgZI	GCGATG	2 cut(s)	121, 1259
BtsCI	GGATG	3 cut(s)	619, 778, 1115
BtsI	GCAGTG	1 cut(s)	248
BtsIMutI	CAGTG	3 cut(s)	248, 377, 531
Cac8I	GCNNGC	6 cut(s)	420, 672, 738, 871, 906, 1055
CciI	TCATGA	1 cut(s)	36
CfoI	GCGC	1 cut(s)	814
Cfr13I	GGNCC	3 cut(s)	844, 990, 1082
Csp6I	GTAC	2 cut(s)	550, 799
CviAII	CATG	8 cut(s)	37, 70, 349, 553, 785, 1018, 1050, 1054
CviQI	GTAC	2 cut(s)	550, 799
DdeI	CTNAG	2 cut(s)	217, 657
DpnI	GATC	5 cut(s)	77, 170, 260, 623, 834
DpnII	GATC	5 cut(s)	75, 168, 258, 621, 832
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	38, 115
EarI	CTCTTC	2 cut(s)	38, 115
Eco130I	CCWWGG	1 cut(s)	276
Eco147I	AGGCCT	1 cut(s)	945
Eco24I	GRGCYC	1 cut(s)	1335
Eco32I	GATATC	1 cut(s)	1146
Eco47I	GGWCC	3 cut(s)	844, 990, 1082
EcoRII	CCWGG	2 cut(s)	115, 1210
EcoRV	GATATC	1 cut(s)	1146
EcoT14I	CCWWGG	1 cut(s)	276
EcoT22I	ATGCAT	2 cut(s)	1055, 1115
EcoT38I	GRGCYC	1 cut(s)	1335
ErhI	CCWWGG	1 cut(s)	276
Esp3I	CGTCTC	1 cut(s)	499
FaeI	CATG	8 cut(s)	40, 73, 352, 556, 788, 1021, 1053, 1057
FalI	AAGNNNNNCTT	8 cut(s)	223, 255, 228, 260, 296, 328, 1184, 1216
FatI	CATG	8 cut(s)	36, 69, 348, 552, 784, 1017, 1049, 1053
FauNDI	CATATG	3 cut(s)	966, 1006, 1124
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	9 cut(s)	364, 416, 668, 741, 1011, 1014, 1242, 1281, 1312
FokI	GGATG	3 cut(s)	626, 785, 1122
FriOI	GRGCYC	1 cut(s)	1335
Fsp4HI	GCNGC	9 cut(s)	364, 416, 668, 741, 1011, 1014, 1242, 1281, 1312
FspBI	CTAG	2 cut(s)	188, 1336
GlaI	GCGC	1 cut(s)	813
GluI	GCNGC	9 cut(s)	364, 416, 668, 741, 1011, 1014, 1242, 1281, 1312
GsaI	CCCAGC	1 cut(s)	182
HaeIII	GGCC	3 cut(s)	83, 780, 945
HapII	CCGG	5 cut(s)	80, 153, 569, 861, 911
HhaI	GCGC	1 cut(s)	814
Hin1II	CATG	8 cut(s)	40, 73, 352, 556, 788, 1021, 1053, 1057
Hin6I	GCGC	1 cut(s)	812
HinP1I	GCGC	1 cut(s)	812
HindIII	AAGCTT	1 cut(s)	237
HinfI	GANTC	3 cut(s)	435, 572, 635
HpaII	CCGG	5 cut(s)	80, 153, 569, 861, 911
HphI	GGTGA	3 cut(s)	79, 85, 142
Hpy166II	GTNNAC	3 cut(s)	322, 962, 1130
Hpy188I	TCNGA	7 cut(s)	220, 434, 613, 660, 1090, 1152, 1189
Hpy188III	TCNNGA	1 cut(s)	37
Hpy8I	GTNNAC	3 cut(s)	322, 962, 1130
Hpy99I	CGWCG	3 cut(s)	95, 430, 730
HpyAV	CCTTC	7 cut(s)	353, 404, 696, 791, 1003, 1093, 1296
HpyCH4III	ACNGT	4 cut(s)	43, 526, 609, 877
HpyCH4IV	ACGT	5 cut(s)	65, 93, 318, 428, 728
HpyCH4V	TGCA	9 cut(s)	52, 461, 667, 743, 962, 1053, 1113, 1136, 1320
HpyF10VI	GCNNNNNNNGC	9 cut(s)	250, 372, 392, 539, 749, 1059, 1119, 1250, 1317
HpyF3I	CTNAG	2 cut(s)	217, 657
HpySE526I	ACGT	5 cut(s)	65, 93, 318, 428, 728
Hsp92II	CATG	8 cut(s)	40, 73, 352, 556, 788, 1021, 1053, 1057
HspAI	GCGC	1 cut(s)	812
Kzo9I	GATC	5 cut(s)	75, 168, 258, 621, 832
LmnI	GCTCC	5 cut(s)	137, 604, 913, 1288, 1330
Lsp1109I	GCAGC	7 cut(s)	375, 679, 727, 997, 1000, 1228, 1267
LweI	GCATC	2 cut(s)	186, 1100
MaeI	CTAG	2 cut(s)	188, 1336
MaeII	ACGT	5 cut(s)	65, 93, 318, 428, 728
MaeIII	GTNAC	2 cut(s)	94, 603
MalI	GATC	5 cut(s)	77, 170, 260, 623, 834
MbiI	CCGCTC	1 cut(s)	599
MboI	GATC	5 cut(s)	75, 168, 258, 621, 832
MboII	GAAGA	4 cut(s)	25, 132, 243, 304
MfeI	CAATTG	2 cut(s)	744, 1315
MhlI	GDGCHC	4 cut(s)	134, 658, 964, 1335
MluCI	AATT	6 cut(s)	267, 627, 744, 1077, 1204, 1315
MlyI	GAGTC	1 cut(s)	444
MmeI	TCCRAC	3 cut(s)	591, 600, 1213
Mph1103I	ATGCAT	2 cut(s)	1055, 1115
MseI	TTAA	3 cut(s)	630, 692, 1203
MslI	CAYNNNNRTG	2 cut(s)	68, 1048
MspA1I	CMGCKG	3 cut(s)	641, 886, 1311
MspCI	CTTAAG	1 cut(s)	691
MspI	CCGG	5 cut(s)	80, 153, 569, 861, 911
MspR9I	CCNGG	4 cut(s)	80, 117, 862, 1212
MunI	CAATTG	2 cut(s)	744, 1315
MvaI	CCWGG	2 cut(s)	117, 1212
MvnI	CGCG	2 cut(s)	329, 814
MwoI	GCNNNNNNNGC	9 cut(s)	250, 372, 392, 539, 749, 1059, 1119, 1250, 1317
NciI	CCSGG	2 cut(s)	80, 862
NdeI	CATATG	3 cut(s)	966, 1006, 1124
NdeII	GATC	5 cut(s)	75, 168, 258, 621, 832
NlaIII	CATG	8 cut(s)	40, 73, 352, 556, 788, 1021, 1053, 1057
NlaIV	GGNNCC	6 cut(s)	475, 874, 909, 1002, 1197, 1332
NsiI	ATGCAT	2 cut(s)	1055, 1115
NspI	RCATGY	1 cut(s)	1057
PaeI	GCATGC	1 cut(s)	1057
PagI	TCATGA	1 cut(s)	36
PceI	AGGCCT	1 cut(s)	945
PfeI	GAWTC	2 cut(s)	572, 635
PfoI	TCCNGGA	1 cut(s)	115
PkrI	GCNGC	9 cut(s)	365, 417, 669, 742, 1012, 1015, 1243, 1282, 1313
Ple19I	CGATCG	1 cut(s)	171
PleI	GAGTC	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	443
Psp6I	CCWGG	2 cut(s)	115, 1210
PspFI	CCCAGC	1 cut(s)	178
PspGI	CCWGG	2 cut(s)	115, 1210
PspN4I	GGNNCC	6 cut(s)	475, 874, 909, 1002, 1197, 1332
PspPI	GGNCC	3 cut(s)	844, 990, 1082
PvuI	CGATCG	1 cut(s)	171
PvuII	CAGCTG	2 cut(s)	641, 886
RsaI	GTAC	2 cut(s)	551, 800
RsaNI	GTAC	2 cut(s)	550, 799
RseI	CAYNNNNRTG	2 cut(s)	68, 1048
SaqAI	TTAA	3 cut(s)	630, 692, 1203
SatI	GCNGC	9 cut(s)	364, 416, 668, 741, 1011, 1014, 1242, 1281, 1312
Sau3AI	GATC	5 cut(s)	75, 168, 258, 621, 832
Sau96I	GGNCC	3 cut(s)	844, 990, 1082
SchI	GAGTC	1 cut(s)	444
ScrFI	CCNGG	4 cut(s)	80, 117, 862, 1212
SduI	GDGCHC	4 cut(s)	134, 658, 964, 1335
SfaNI	GCATC	2 cut(s)	186, 1100
SinI	GGWCC	3 cut(s)	844, 990, 1082
SmiMI	CAYNNNNRTG	2 cut(s)	68, 1048
SmlI	CTYRAG	2 cut(s)	691, 1104
SmoI	CTYRAG	2 cut(s)	691, 1104
SpeI	ACTAGT	1 cut(s)	187
SphI	GCATGC	1 cut(s)	1057
Sse9I	AATT	6 cut(s)	267, 627, 744, 1077, 1204, 1315
SseBI	AGGCCT	1 cut(s)	945
SspMI	CTAG	2 cut(s)	188, 1336
StuI	AGGCCT	1 cut(s)	945
StyD4I	CCNGG	4 cut(s)	78, 115, 860, 1210
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	4 cut(s)	43, 526, 609, 877
TaiI	ACGT	5 cut(s)	68, 96, 321, 431, 731
TaqI	TCGA	4 cut(s)	425, 938, 1070, 1295
TasI	AATT	6 cut(s)	267, 627, 744, 1077, 1204, 1315
TatI	WGTACW	2 cut(s)	549, 798
TauI	GCSGC	2 cut(s)	418, 1314
TfiI	GAWTC	2 cut(s)	572, 635
Tru1I	TTAA	3 cut(s)	630, 692, 1203
Tru9I	TTAA	3 cut(s)	630, 692, 1203
TscAI	CASTG	3 cut(s)	255, 377, 531
TseI	GCWGC	7 cut(s)	363, 667, 740, 1010, 1013, 1241, 1280
TspDTI	ATGAA	4 cut(s)	25, 58, 630, 773
TspGWI	ACGGA	3 cut(s)	591, 1074, 1318
TspRI	CASTG	3 cut(s)	255, 377, 531
Vha464I	CTTAAG	1 cut(s)	691
VneI	GTGCAC	1 cut(s)	960
VpaK11BI	GGWCC	3 cut(s)	844, 990, 1082
XceI	RCATGY	1 cut(s)	1057
XmiI	GTMKAC	1 cut(s)	321
XspI	CTAG	2 cut(s)	188, 1336
Zsp2I	ATGCAT	2 cut(s)	1055, 1115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.