Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009793

Physical Location & Seq

Genomic Coordinates Reverse (-)

27508657 .. 27514912

Gene Structure 6256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g37910.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGAGAAGTTATCATCATCAGGGGGGCTGAGCCACCTTTACATGACGATATTTCTGCACAACTTCTCGACGTTCATGGTGATTCCGGCCATTACCGATGTTACGATGACTGCACTCTGTCCCGGAAGAGACGAGTGCTCCATCGCTATCTACCTCACCGGATTTCAACAAGCGATCGTAGGGCTGGGAACACTTGTGATGATGCCTTTGGTAGGAAATCTCTCAGACAAATTTGGGAGAAAAGCTCTGCTCACCCTTCCAATGATTTTCACTATAATCCCCTTAGGAATATTAGCTTACAGTAGGACAAGGAATTTCTTCTATGCTTACTTTGTGGCCAAGACTCTCACTGCCATGGTTTGCGAAGGCAGCGTTCATTGCCTCGCCCTTGCCTATGTGGCTGATAATGTTCCAGAAGGACGACGAGCTTCGACGTTTGGAATTCTCTCCGGTATTAGTTCAGCTGCATTTGTCTGTGGAACCCTATTTACTCGTTTCGTATCCACTCCCTCCATGTTTCAGGTTGCGACATCGGTGGCGGTGGTAGCAGTAATGTACATGAGGATTTTCCTACCGGAATCGATTATAGACGATGACATTTCCGCCCCATTGCTCTCAAATGGAAAGCCAAAAGTTTTGAACTCGGATGAAAACTCAAATGTGGAATTGCAGTCTTCTAAAGCTTTACCTTCATTACCTGATTTAATCGCATTGTTGAAAACTAGCCCTACATTTTCCCAAGCTGCAATTGTTGCGTTTTTTAGCAATCTGGCCGATGTTGGCCTTCATGCTTCACTACTGTACTATTTAAAGGCCCGGTTTCACTTCAACAAGGATCAGTTTGCTGACCTGATGGTGATTTCGGGGGTAGCAAGCACTATTTCACAGCTGGTTCTCATGCCCTTACTAGCTCCTGTTTTGGGAGAGGAGAGGTTACTTTCGATAGGGCTTCTTTTTAGCTGTGCACATATGTTCTTTTATGGCCTTGCTTGGTCCTTCTGGGTTCCATATGCTGCTGCTATGTTCTCTATCTTTTTTGTGTTTGCACAGCCATGTATGCGAAGCATTGTATCAAAACAAGTTGGGCCGTCTGAGCAGGGAAAGGCTCAAGGGTGTATTTCAGGCATATGCTCCTTTGCAAATGTTATATCTCCCTTTGCTTTCTCTCCTCTAACAGCTTTGTTCCTGTCTGAAAAGGCTCCATTTAATTTTCCTGGTTTTAGTATCGTCTGCGTTGGATTCGCTGCGATGGTAGCCTTTATTCAAAGCGTGATGATAAAGGCTGCTCCTCCCATATCAAGCGAACGAGTCAGCAGCAATTGCGATCACATGGAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

447

Amino Acids

48.21

Weight (kDa)

7.01

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	14 - 385	4e-27	Major Facilitator Superfamily
MFS_1	PF07690	251 - 420	1.1e-09	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42210 AT5G42210
fragaria_vesca	FvH4_2g37910 FvH4_2g37910
malus_domestica	MD08G1007300.v1.1 MD15G1006500.v1.1
prunus_persica	Prupe.1G359100_v2.0.a1
pyrus_communis	pycom08g00590 pycom15g00510
rosa_chinensis	RchiOBHm_Chr6g0303701
rosa_laevigata	RLG00000011054
rosa_multiflora	Rmu_co8304199.1_g000001 Rmu_sc0014789.1_g000006
rosa_roxburghii	Rroxscaffold_7G00164470
rosa_rugosa	Rorug06G0324100 Rorug06G0324100
rosa_samantha	Rh6AG438400 Rh6BG464700 Rh6CG450700 Rh6DG437400
rosa_wichuraiana	Rw6G037940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	539, 603
AclWI	GGATC	1 cut(s)	843
AcoI	YGGCCR	3 cut(s)	87, 336, 771
AcsI	RAATTY	3 cut(s)	230, 313, 441
AfaI	GTAC	2 cut(s)	557, 803
AfiI	CCNNNNNNNGG	2 cut(s)	212, 920
AgsI	TTSAA	5 cut(s)	167, 640, 718, 829, 1265
AjnI	CCWGG	1 cut(s)	1213
Alw21I	GWGCWC	2 cut(s)	140, 967
Alw26I	GTCTC	1 cut(s)	123
Alw44I	GTGCAC	1 cut(s)	963
AlwI	GGATC	1 cut(s)	843
AoxI	GGCC	7 cut(s)	87, 336, 771, 781, 813, 982, 1085
ApaLI	GTGCAC	1 cut(s)	963
ApeKI	GCWGC	8 cut(s)	369, 464, 743, 1013, 1016, 1244, 1283, 1314
ApoI	RAATTY	3 cut(s)	230, 313, 441
Asp700I	GAANNNNTTC	1 cut(s)	317
AspS9I	GGNCC	3 cut(s)	814, 993, 1085
AsuC2I	CCSGG	2 cut(s)	123, 817
AsuHPI	GGTGA	4 cut(s)	91, 148, 244, 868
AvaII	GGWCC	1 cut(s)	993
AxyI	CCTNAGG	1 cut(s)	283
BaeGI	GKGCMC	1 cut(s)	967
BalI	TGGCCA	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	666
Bbv12I	GWGCWC	2 cut(s)	140, 967
BbvI	GCAGC	8 cut(s)	381, 451, 730, 1000, 1003, 1231, 1270, 1326
BccI	CCATC	3 cut(s)	149, 847, 1243
BceAI	ACGGC	1 cut(s)	1072
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BciT130I	CCWGG	1 cut(s)	1215
BciVI	GTATCC	1 cut(s)	511
BcnI	CCSGG	2 cut(s)	123, 817
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	3 cut(s)	723, 908, 1339
BfuI	GTATCC	1 cut(s)	511
BglI	GCCNNNNNGGC	1 cut(s)	398
BisI	GCNGC	8 cut(s)	370, 465, 744, 1014, 1017, 1245, 1284, 1315
BlpI	GCTNAGC	1 cut(s)	29
BlsI	GCNGC	8 cut(s)	371, 466, 745, 1015, 1018, 1246, 1285, 1316
Bme1390I	CCNGG	3 cut(s)	123, 817, 1215
Bme18I	GGWCC	1 cut(s)	993
BmgT120I	GGNCC	3 cut(s)	814, 993, 1085
BmiI	GGNNCC	4 cut(s)	481, 1005, 1200, 1335
BmrFI	CCNGG	3 cut(s)	123, 817, 1215
BmsI	GCATC	1 cut(s)	192
BpiI	GAAGAC	1 cut(s)	666
BplI	GAGNNNNNCTC	2 cut(s)	229, 261
Bpu1102I	GCTNAGC	1 cut(s)	29
BpuEI	CTTGAG	1 cut(s)	1092
BpuMI	CCSGG	2 cut(s)	123, 817
Bsa29I	ATCGAT	1 cut(s)	581
BsaJI	CCNNGG	1 cut(s)	354
BsaWI	WCCGGW	3 cut(s)	158, 449, 574
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 920
Bse21I	CCTNAGG	1 cut(s)	283
Bse3DI	GCAATG	2 cut(s)	376, 608
BseBI	CCWGG	1 cut(s)	1215
BseCI	ATCGAT	1 cut(s)	581
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	1 cut(s)	652
BseLI	CCNNNNNNNGG	2 cut(s)	212, 920
BseMI	GCAATG	2 cut(s)	376, 608
BseMII	CTCAG	3 cut(s)	20, 237, 1083
BseRI	GAGGAG	3 cut(s)	941, 1158, 1278
BseSI	GKGCMC	1 cut(s)	967
BseXI	GCAGC	8 cut(s)	381, 451, 730, 1000, 1003, 1231, 1270, 1326
BseYI	CCCAGC	1 cut(s)	184
BsgI	GTGCAG	2 cut(s)	41, 96
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	7 cut(s)	89, 338, 773, 783, 815, 984, 1087
BshVI	ATCGAT	1 cut(s)	581
BsiEI	CGRYCG	1 cut(s)	177
BsiHKAI	GWGCWC	2 cut(s)	140, 967
BsiSI	CCGG	6 cut(s)	86, 123, 159, 450, 575, 817
BslFI	GGGAC	1 cut(s)	105
BslI	CCNNNNNNNGG	2 cut(s)	212, 920
BsmAI	GTCTC	1 cut(s)	123
BsmBI	CGTCTC	1 cut(s)	123
BsmFI	GGGAC	1 cut(s)	105
BsnI	GGCC	7 cut(s)	89, 338, 773, 783, 815, 984, 1087
Bsp1286I	GDGCHC	2 cut(s)	140, 967
Bsp1407I	TGTACA	1 cut(s)	555
Bsp143I	GATC	3 cut(s)	174, 835, 1324
Bsp1720I	GCTNAGC	1 cut(s)	29
Bsp19I	CCATGG	1 cut(s)	354
BspACI	CCGC	2 cut(s)	539, 603
BspANI	GGCC	7 cut(s)	89, 338, 773, 783, 815, 984, 1087
BspCNI	CTCAG	3 cut(s)	21, 236, 1084
BspDI	ATCGAT	1 cut(s)	581
BspLI	GGNNCC	4 cut(s)	481, 1005, 1200, 1335
BspPI	GGATC	1 cut(s)	843
BsrDI	GCAATG	2 cut(s)	376, 608
BsrGI	TGTACA	1 cut(s)	555
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	3 cut(s)	174, 835, 1324
BssT1I	CCWWGG	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	1215
Bst4CI	ACNGT	2 cut(s)	302, 801
Bst6I	CTCTTC	1 cut(s)	121
BstAPI	GCANNNNNTGC	2 cut(s)	752, 1320
BstAUI	TGTACA	1 cut(s)	555
BstC8I	GCNNGC	1 cut(s)	874
BstDEI	CTNAG	4 cut(s)	29, 223, 283, 1092
BstDSI	CCRYGG	1 cut(s)	354
BstENI	CCTNNNNNAGG	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	652
BstKTI	GATC	3 cut(s)	177, 838, 1327
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	3 cut(s)	174, 835, 1324
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	9 cut(s)	369, 378, 398, 545, 752, 1057, 1093, 1253, 1320
BstNI	CCWGG	1 cut(s)	1215
BstSCI	CCNGG	3 cut(s)	121, 815, 1213
BstSLI	GKGCMC	1 cut(s)	967
BstV1I	GCAGC	8 cut(s)	381, 451, 730, 1000, 1003, 1231, 1270, 1326
BstV2I	GAAGAC	1 cut(s)	666
Bsu15I	ATCGAT	1 cut(s)	581
Bsu36I	CCTNAGG	1 cut(s)	283
BsuI	GTATCC	1 cut(s)	511
BsuRI	GGCC	7 cut(s)	89, 338, 773, 783, 815, 984, 1087
BsuTUI	ATCGAT	1 cut(s)	581
BtgI	CCRYGG	1 cut(s)	354
BtgZI	GCGATG	2 cut(s)	127, 1262
BtsCI	GGATG	1 cut(s)	652
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	1 cut(s)	874
Cfr13I	GGNCC	3 cut(s)	814, 993, 1085
ClaI	ATCGAT	1 cut(s)	581
Csp6I	GTAC	2 cut(s)	556, 802
CviAII	CATG	9 cut(s)	43, 76, 355, 514, 559, 788, 898, 1053, 1330
CviQI	GTAC	2 cut(s)	556, 802
DdeI	CTNAG	4 cut(s)	29, 223, 283, 1092
DpnI	GATC	3 cut(s)	176, 837, 1326
DpnII	GATC	3 cut(s)	174, 835, 1324
DraI	TTTAAA	1 cut(s)	810
EaeI	YGGCCR	3 cut(s)	87, 336, 771
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
EciI	GGCGGA	1 cut(s)	592
Eco130I	CCWWGG	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	993
Eco81I	CCTNAGG	1 cut(s)	283
EcoNI	CCTNNNNNAGG	1 cut(s)	210
EcoRI	GAATTC	1 cut(s)	441
EcoRII	CCWGG	1 cut(s)	1213
EcoT14I	CCWWGG	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	354
Esp3I	CGTCTC	1 cut(s)	123
FaeI	CATG	9 cut(s)	46, 79, 358, 517, 562, 791, 901, 1056, 1333
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	9 cut(s)	42, 75, 354, 513, 558, 787, 897, 1052, 1329
FauNDI	CATATG	3 cut(s)	969, 1009, 1127
Fnu4HI	GCNGC	8 cut(s)	370, 465, 744, 1014, 1017, 1245, 1284, 1315
FokI	GGATG	1 cut(s)	659
Fsp4HI	GCNGC	8 cut(s)	370, 465, 744, 1014, 1017, 1245, 1284, 1315
FspBI	CTAG	3 cut(s)	723, 908, 1339
GluI	GCNGC	8 cut(s)	370, 465, 744, 1014, 1017, 1245, 1284, 1315
GsaI	CCCAGC	1 cut(s)	188
HaeIII	GGCC	7 cut(s)	89, 338, 773, 783, 815, 984, 1087
HapII	CCGG	6 cut(s)	86, 123, 159, 450, 575, 817
Hin1II	CATG	9 cut(s)	46, 79, 358, 517, 562, 791, 901, 1056, 1333
HindIII	AAGCTT	1 cut(s)	681
HinfI	GANTC	5 cut(s)	82, 343, 578, 1239, 1308
HpaII	CCGG	6 cut(s)	86, 123, 159, 450, 575, 817
HphI	GGTGA	4 cut(s)	91, 148, 244, 868
Hpy166II	GTNNAC	1 cut(s)	965
Hpy188I	TCNGA	4 cut(s)	226, 646, 1093, 1192
Hpy188III	TCNNGA	2 cut(s)	67, 413
Hpy8I	GTNNAC	1 cut(s)	965
Hpy99I	CGWCG	3 cut(s)	73, 426, 436
HpyAV	CCTTC	6 cut(s)	266, 359, 410, 699, 794, 1006
HpyCH4III	ACNGT	2 cut(s)	302, 801
HpyCH4IV	ACGT	2 cut(s)	71, 434
HpyCH4V	TGCA	8 cut(s)	58, 113, 467, 670, 746, 965, 1046, 1139
HpyF10VI	GCNNNNNNNGC	9 cut(s)	369, 378, 398, 545, 752, 1057, 1093, 1253, 1320
HpyF3I	CTNAG	4 cut(s)	29, 223, 283, 1092
HpySE526I	ACGT	2 cut(s)	71, 434
Hsp92II	CATG	9 cut(s)	46, 79, 358, 517, 562, 791, 901, 1056, 1333
Kzo9I	GATC	3 cut(s)	174, 835, 1324
LmnI	GCTCC	5 cut(s)	143, 916, 1136, 1204, 1291
Lsp1109I	GCAGC	8 cut(s)	381, 451, 730, 1000, 1003, 1231, 1270, 1326
LweI	GCATC	1 cut(s)	192
MaeI	CTAG	3 cut(s)	723, 908, 1339
MaeII	ACGT	2 cut(s)	71, 434
MaeIII	GTNAC	2 cut(s)	100, 933
MalI	GATC	3 cut(s)	176, 837, 1326
MboI	GATC	3 cut(s)	174, 835, 1324
MboII	GAAGA	3 cut(s)	138, 310, 666
MfeI	CAATTG	2 cut(s)	747, 1318
MhlI	GDGCHC	2 cut(s)	140, 967
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	7 cut(s)	230, 313, 441, 665, 747, 1207, 1318
MluNI	TGGCCA	1 cut(s)	338
MlyI	GAGTC	2 cut(s)	337, 1317
MmeI	TCCRAC	1 cut(s)	1216
MnlI	CCTC	8 cut(s)	164, 392, 520, 555, 919, 924, 1179, 1299
Mox20I	TGGCCA	1 cut(s)	338
MroXI	GAANNNNTTC	1 cut(s)	317
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	3 cut(s)	704, 809, 1206
MslI	CAYNNNNRTG	2 cut(s)	353, 1051
Msp20I	TGGCCA	1 cut(s)	338
MspA1I	CMGCKG	2 cut(s)	464, 889
MspI	CCGG	6 cut(s)	86, 123, 159, 450, 575, 817
MspR9I	CCNGG	3 cut(s)	123, 817, 1215
MunI	CAATTG	2 cut(s)	747, 1318
MvaI	CCWGG	1 cut(s)	1215
MwoI	GCNNNNNNNGC	9 cut(s)	369, 378, 398, 545, 752, 1057, 1093, 1253, 1320
NciI	CCSGG	2 cut(s)	123, 817
NcoI	CCATGG	1 cut(s)	354
NdeI	CATATG	3 cut(s)	969, 1009, 1127
NdeII	GATC	3 cut(s)	174, 835, 1324
NlaIII	CATG	9 cut(s)	46, 79, 358, 517, 562, 791, 901, 1056, 1333
NlaIV	GGNNCC	4 cut(s)	481, 1005, 1200, 1335
PdmI	GAANNNNTTC	1 cut(s)	317
PfeI	GAWTC	3 cut(s)	82, 578, 1239
PfoI	TCCNGGA	1 cut(s)	121
PkrI	GCNGC	8 cut(s)	371, 466, 745, 1015, 1018, 1246, 1285, 1316
Ple19I	CGATCG	1 cut(s)	177
PleI	GAGTC	2 cut(s)	337, 1316
PpsI	GAGTC	2 cut(s)	337, 1316
Psp6I	CCWGG	1 cut(s)	1213
PspFI	CCCAGC	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	1213
PspN4I	GGNNCC	4 cut(s)	481, 1005, 1200, 1335
PspPI	GGNCC	3 cut(s)	814, 993, 1085
PsrI	GAACNNNNNNTAC	2 cut(s)	472, 504
PvuI	CGATCG	1 cut(s)	177
PvuII	CAGCTG	2 cut(s)	464, 889
RsaI	GTAC	2 cut(s)	557, 803
RsaNI	GTAC	2 cut(s)	556, 802
RseI	CAYNNNNRTG	2 cut(s)	353, 1051
SaqAI	TTAA	3 cut(s)	704, 809, 1206
SatI	GCNGC	8 cut(s)	370, 465, 744, 1014, 1017, 1245, 1284, 1315
Sau3AI	GATC	3 cut(s)	174, 835, 1324
Sau96I	GGNCC	3 cut(s)	814, 993, 1085
SchI	GAGTC	2 cut(s)	337, 1317
ScrFI	CCNGG	3 cut(s)	123, 817, 1215
SduI	GDGCHC	2 cut(s)	140, 967
SfaNI	GCATC	1 cut(s)	192
SinI	GGWCC	1 cut(s)	993
SmiMI	CAYNNNNRTG	2 cut(s)	353, 1051
SmlI	CTYRAG	1 cut(s)	1107
SmoI	CTYRAG	1 cut(s)	1107
Sse9I	AATT	7 cut(s)	230, 313, 441, 665, 747, 1207, 1318
SsiI	CCGC	2 cut(s)	539, 603
SspI	AATATT	1 cut(s)	291
SspMI	CTAG	3 cut(s)	723, 908, 1339
StyD4I	CCNGG	3 cut(s)	121, 815, 1213
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	2 cut(s)	302, 801
TaiI	ACGT	2 cut(s)	74, 437
TaqI	TCGA	4 cut(s)	68, 431, 581, 941
TasI	AATT	7 cut(s)	230, 313, 441, 665, 747, 1207, 1318
TatI	WGTACW	2 cut(s)	555, 801
TfiI	GAWTC	3 cut(s)	82, 578, 1239
Tru1I	TTAA	3 cut(s)	704, 809, 1206
Tru9I	TTAA	3 cut(s)	704, 809, 1206
TscAI	CASTG	1 cut(s)	355
TseI	GCWGC	8 cut(s)	369, 464, 743, 1013, 1016, 1244, 1283, 1314
TspDTI	ATGAA	5 cut(s)	64, 365, 663, 681, 776
TspRI	CASTG	1 cut(s)	355
VneI	GTGCAC	1 cut(s)	963
VpaK11BI	GGWCC	1 cut(s)	993
XagI	CCTNNNNNAGG	1 cut(s)	210
XapI	RAATTY	3 cut(s)	230, 313, 441
XmnI	GAANNNNTTC	1 cut(s)	317
XspI	CTAG	3 cut(s)	723, 908, 1339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.