Rh6DG437400

Hippocampus abundant transcript 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0009793
Physical Location & Seq
Forward (+)
61469775 .. 61476720
6946 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG437400.1

Sequence Viewer

Length: 1083 bp
ATGGAGAAGTTATCACCAGGGGGGCTCAGCCACCTTTACATGACGATCTTTCTGCACAACTTCGCGACGTTCATGGTGATCCCGGCCATTACCGACGTTACAATGACTGCGCTTTGTCCCGGAAGAGACAAGTGCTCTATCGCTATTTACCTCACCGGATTTCAACAAGCGATCGTAGGGCTGGGAACACTGGTGATGATGCCTTTGGTAGGGAATCTCTCAGACAAATGTGGGAGAAAAGCTCTGCTCACACTTCCAATGATTTTCACTATAATCCCCTTAGGAATATTAGCCTACAGCAGGACTAGGAATTTCTTCTATGCGTACTTTGTGGCCAAGACTCTCACTGCCATGGTCTGCGAAGGCAGCGTTCACTGCCTCGCCCTTGCCTATGTGGCGGATAATGTTCCAGAAGGACGACGAGCCTCGACGTTTGGAATTCTATCAGGGATTAGTTCCGCTGCCTTCGTCTGCGGAACCCTATTTACTCGTTTTGTATCCACTACCTCAATGTTTCAGGTGGCGACAACGGTGGCGGTTGTAGCAGTAATATACATGAGGATTTTCCTACCGGATTCGATCATAGACGATAACATTTCCGCTCCATTACTTTCAAATGAAAAGCCAAAAGTTTCAAATTCGGATGAAAATTCAAATGCGGAATTGCAGTCCTCTACAGCTTTACCTTCATTACCTGATATAATCGCATTGTTGAAAACTAGCCCTACATTTTCCCAAGCTGCAATTGTTGCGTTTTTCAGCAATCTGGCCGATGTTGGCCTTCATGCTTCACTATTGTACTATTTAAAGGCCCGGTTTCACTTCAACAAGGATCAGTTTGCTGACCTAATGGTGATTTCGGGGGTTGCAGGCACTATTTCACAGTTGGTCCTCATGCCCTTACTGGCTCCTGTTTTAGGAGAGGAGAGGTTACTTTCGATAGGGCTTCTTTTTGGCTGTGCACATATGTTTTTTTATGGCCTTGCGTGGTCCTTCTGGGTACCTACTTGCAACTTCTCTGGCAATCTCAAGTGTATCTTTATTGTGAAATTAAAATTATATGTTTTAATCTACTGCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

360

Amino Acids

39.23

Weight (kDa)

8.28

Isoelectric Point (pI)

29.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 13 - 332 6.3e-21 Major Facilitator Superfamily
Sugar_tr PF00083 51 - 358 5.6e-06 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1000
AccB1I GGYRCC 1 cut(s) 1000
AccBSI CCGCTC 1 cut(s) 602
AccII CGCG 1 cut(s) 65
AciI CCGC 6 cut(s) 398, 459, 474, 536, 600, 659
AclWI GGATC 2 cut(s) 73, 840
AcoI YGGCCR 3 cut(s) 84, 333, 768
AcsI RAATTY 4 cut(s) 310, 438, 637, 649
AfaI GTAC 3 cut(s) 326, 800, 1002
AfiI CCNNNNNNNGG 3 cut(s) 209, 300, 917
AgsI TTSAA 6 cut(s) 164, 615, 636, 654, 715, 826
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 3 cut(s) 242, 680, 740
AluI AGCT 3 cut(s) 242, 680, 740
Alw21I GWGCWC 2 cut(s) 137, 964
Alw26I GTCTC 1 cut(s) 120
Alw44I GTGCAC 1 cut(s) 960
AlwI GGATC 2 cut(s) 73, 840
AoxI GGCC 6 cut(s) 84, 333, 768, 778, 810, 979
ApaLI GTGCAC 1 cut(s) 960
ApeKI GCWGC 3 cut(s) 366, 461, 740
ApoI RAATTY 4 cut(s) 310, 438, 637, 649
Asp700I GAANNNNTTC 1 cut(s) 314
Asp718I GGTACC 1 cut(s) 1000
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 3 cut(s) 811, 889, 990
AsuC2I CCSGG 3 cut(s) 83, 120, 814
AsuHPI GGTGA 5 cut(s) 6, 88, 145, 205, 865
AvaII GGWCC 2 cut(s) 889, 990
AxyI CCTNAGG 1 cut(s) 280
BaeGI GKGCMC 1 cut(s) 964
BalI TGGCCA 1 cut(s) 335
BanI GGYRCC 1 cut(s) 1000
BanII GRGCYC 1 cut(s) 27
Bbv12I GWGCWC 2 cut(s) 137, 964
BbvI GCAGC 3 cut(s) 378, 448, 727
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BciT130I CCWGG 1 cut(s) 18
BciVI GTATCC 1 cut(s) 508
BcnI CCSGG 3 cut(s) 83, 120, 814
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 3 cut(s) 306, 720, 1081
BfmI CTRYAG 2 cut(s) 295, 675
BfuI GTATCC 1 cut(s) 508
BglI GCCNNNNNGGC 1 cut(s) 395
BisI GCNGC 3 cut(s) 367, 462, 741
BlpI GCTNAGC 1 cut(s) 26
BlsI GCNGC 3 cut(s) 368, 463, 742
Bme1390I CCNGG 4 cut(s) 18, 83, 120, 814
Bme18I GGWCC 2 cut(s) 889, 990
BmgT120I GGNCC 3 cut(s) 811, 889, 990
BmiI GGNNCC 3 cut(s) 478, 909, 1002
BmrFI CCNGG 4 cut(s) 18, 83, 120, 814
BmsI GCATC 1 cut(s) 189
BplI GAGNNNNNCTC 2 cut(s) 226, 258
Bpu1102I GCTNAGC 1 cut(s) 26
BpuEI CTTGAG 1 cut(s) 1013
BpuMI CCSGG 3 cut(s) 83, 120, 814
BsaJI CCNNGG 2 cut(s) 17, 351
BsaWI WCCGGW 2 cut(s) 155, 571
Bsc4I CCNNNNNNNGG 3 cut(s) 209, 300, 917
Bse1I ACTGG 2 cut(s) 195, 909
Bse21I CCTNAGG 1 cut(s) 280
BseBI CCWGG 1 cut(s) 18
BseDI CCNNGG 2 cut(s) 17, 351
BseGI GGATG 1 cut(s) 649
BseLI CCNNNNNNNGG 3 cut(s) 209, 300, 917
BseMII CTCAG 2 cut(s) 40, 234
BseNI ACTGG 2 cut(s) 195, 909
BseRI GAGGAG 1 cut(s) 938
BseSI GKGCMC 1 cut(s) 964
BseXI GCAGC 3 cut(s) 378, 448, 727
BseYI CCCAGC 1 cut(s) 181
BsgI GTGCAG 1 cut(s) 38
Bsh1236I CGCG 1 cut(s) 65
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 6 cut(s) 86, 335, 770, 780, 812, 981
BshNI GGYRCC 1 cut(s) 1000
BsiEI CGRYCG 1 cut(s) 174
BsiHKAI GWGCWC 2 cut(s) 137, 964
BsiSI CCGG 5 cut(s) 83, 120, 156, 572, 814
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 3 cut(s) 209, 300, 917
BsmAI GTCTC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 102
BsnI GGCC 6 cut(s) 86, 335, 770, 780, 812, 981
Bsp1286I GDGCHC 3 cut(s) 27, 137, 964
Bsp143I GATC 5 cut(s) 45, 78, 171, 579, 832
Bsp1720I GCTNAGC 1 cut(s) 26
Bsp19I CCATGG 1 cut(s) 351
Bsp68I TCGCGA 1 cut(s) 65
BspACI CCGC 6 cut(s) 398, 459, 474, 536, 600, 659
BspANI GGCC 6 cut(s) 86, 335, 770, 780, 812, 981
BspCNI CTCAG 2 cut(s) 39, 233
BspFNI CGCG 1 cut(s) 65
BspLI GGNNCC 3 cut(s) 478, 909, 1002
BspPI GGATC 2 cut(s) 73, 840
BspT107I GGYRCC 1 cut(s) 1000
BsrBI CCGCTC 1 cut(s) 602
BsrI ACTGG 2 cut(s) 195, 909
BssECI CCNNGG 2 cut(s) 17, 351
BssMI GATC 5 cut(s) 45, 78, 171, 579, 832
BssT1I CCWWGG 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 18
Bst4CI ACNGT 2 cut(s) 532, 885
Bst6I CTCTTC 1 cut(s) 118
BstAPI GCANNNNNTGC 1 cut(s) 749
BstC8I GCNNGC 1 cut(s) 871
BstDEI CTNAG 3 cut(s) 26, 220, 280
BstDSI CCRYGG 1 cut(s) 351
BstENI CCTNNNNNAGG 3 cut(s) 207, 298, 915
BstF5I GGATG 1 cut(s) 649
BstFNI CGCG 1 cut(s) 65
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 5 cut(s) 48, 81, 174, 582, 835
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 5 cut(s) 45, 78, 171, 579, 832
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 5 cut(s) 366, 375, 395, 542, 749
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 4 cut(s) 16, 81, 118, 812
BstSFI CTRYAG 2 cut(s) 295, 675
BstSLI GKGCMC 1 cut(s) 964
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 3 cut(s) 378, 448, 727
Bsu36I CCTNAGG 1 cut(s) 280
BsuI GTATCC 1 cut(s) 508
BsuRI GGCC 6 cut(s) 86, 335, 770, 780, 812, 981
BtgI CCRYGG 1 cut(s) 351
BtsCI GGATG 1 cut(s) 649
BtsI GCAGTG 2 cut(s) 345, 373
BtsIMutI CAGTG 3 cut(s) 188, 345, 373
BtuMI TCGCGA 1 cut(s) 65
Cac8I GCNNGC 1 cut(s) 871
CfoI GCGC 1 cut(s) 112
Cfr13I GGNCC 3 cut(s) 811, 889, 990
Csp6I GTAC 3 cut(s) 325, 799, 1001
CviAII CATG 6 cut(s) 40, 73, 352, 556, 785, 895
CviQI GTAC 3 cut(s) 325, 799, 1001
DdeI CTNAG 3 cut(s) 26, 220, 280
DpnI GATC 5 cut(s) 47, 80, 173, 581, 834
DpnII GATC 5 cut(s) 45, 78, 171, 579, 832
DraI TTTAAA 1 cut(s) 807
EaeI YGGCCR 3 cut(s) 84, 333, 768
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
EciI GGCGGA 1 cut(s) 413
Eco130I CCWWGG 1 cut(s) 351
Eco24I GRGCYC 1 cut(s) 27
Eco47I GGWCC 2 cut(s) 889, 990
Eco81I CCTNAGG 1 cut(s) 280
EcoNI CCTNNNNNAGG 3 cut(s) 207, 298, 915
EcoRI GAATTC 1 cut(s) 438
EcoRII CCWGG 1 cut(s) 16
EcoT14I CCWWGG 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 6 cut(s) 43, 76, 355, 559, 788, 898
FalI AAGNNNNNCTT 2 cut(s) 1022, 1054
FaqI GGGAC 1 cut(s) 102
FatI CATG 6 cut(s) 39, 72, 351, 555, 784, 894
FauNDI CATATG 1 cut(s) 966
Fnu4HI GCNGC 3 cut(s) 367, 462, 741
FokI GGATG 1 cut(s) 656
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 3 cut(s) 367, 462, 741
FspBI CTAG 3 cut(s) 306, 720, 1081
GlaI GCGC 1 cut(s) 111
GluI GCNGC 3 cut(s) 367, 462, 741
GsaI CCCAGC 1 cut(s) 185
HaeIII GGCC 6 cut(s) 86, 335, 770, 780, 812, 981
HapII CCGG 5 cut(s) 83, 120, 156, 572, 814
HhaI GCGC 1 cut(s) 112
Hin1II CATG 6 cut(s) 43, 76, 355, 559, 788, 898
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HinfI GANTC 3 cut(s) 214, 340, 575
HpaII CCGG 5 cut(s) 83, 120, 156, 572, 814
HphI GGTGA 5 cut(s) 6, 88, 145, 205, 865
Hpy166II GTNNAC 2 cut(s) 373, 962
Hpy188I TCNGA 2 cut(s) 223, 643
Hpy188III TCNNGA 2 cut(s) 64, 410
Hpy8I GTNNAC 2 cut(s) 373, 962
Hpy99I CGWCG 4 cut(s) 70, 98, 423, 433
HpyAV CCTTC 6 cut(s) 356, 407, 475, 696, 791, 1003
HpyCH4III ACNGT 2 cut(s) 532, 885
HpyCH4IV ACGT 3 cut(s) 68, 96, 431
HpyCH4V TGCA 6 cut(s) 55, 667, 743, 869, 962, 1011
HpyF10VI GCNNNNNNNGC 5 cut(s) 366, 375, 395, 542, 749
HpyF3I CTNAG 3 cut(s) 26, 220, 280
HpySE526I ACGT 3 cut(s) 68, 96, 431
Hsp92II CATG 6 cut(s) 43, 76, 355, 559, 788, 898
HspAI GCGC 1 cut(s) 110
KpnI GGTACC 1 cut(s) 1004
Kzo9I GATC 5 cut(s) 45, 78, 171, 579, 832
LmnI GCTCC 2 cut(s) 607, 913
Lsp1109I GCAGC 3 cut(s) 378, 448, 727
LweI GCATC 1 cut(s) 189
MaeI CTAG 3 cut(s) 306, 720, 1081
MaeII ACGT 3 cut(s) 68, 96, 431
MaeIII GTNAC 2 cut(s) 97, 930
MalI GATC 5 cut(s) 47, 80, 173, 581, 834
MbiI CCGCTC 1 cut(s) 602
MboI GATC 5 cut(s) 45, 78, 171, 579, 832
MboII GAAGA 2 cut(s) 135, 307
MfeI CAATTG 1 cut(s) 744
MhlI GDGCHC 3 cut(s) 27, 137, 964
MlsI TGGCCA 1 cut(s) 335
MluCI AATT 8 cut(s) 310, 438, 637, 649, 662, 744, 1049, 1055
MluNI TGGCCA 1 cut(s) 335
MlyI GAGTC 1 cut(s) 334
MnlI CCTC 9 cut(s) 161, 389, 436, 517, 552, 682, 902, 916, 921
Mox20I TGGCCA 1 cut(s) 335
MroXI GAANNNNTTC 1 cut(s) 314
MscI TGGCCA 1 cut(s) 335
MseI TTAA 3 cut(s) 806, 1052, 1067
MslI CAYNNNNRTG 1 cut(s) 350
Msp20I TGGCCA 1 cut(s) 335
MspA1I CMGCKG 1 cut(s) 461
MspI CCGG 5 cut(s) 83, 120, 156, 572, 814
MspR9I CCNGG 4 cut(s) 18, 83, 120, 814
MunI CAATTG 1 cut(s) 744
MvaI CCWGG 1 cut(s) 18
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 5 cut(s) 366, 375, 395, 542, 749
NciI CCSGG 3 cut(s) 83, 120, 814
NcoI CCATGG 1 cut(s) 351
NdeI CATATG 1 cut(s) 966
NdeII GATC 5 cut(s) 45, 78, 171, 579, 832
NlaIII CATG 6 cut(s) 43, 76, 355, 559, 788, 898
NlaIV GGNNCC 3 cut(s) 478, 909, 1002
NruI TCGCGA 1 cut(s) 65
PdmI GAANNNNTTC 1 cut(s) 314
PfeI GAWTC 2 cut(s) 214, 575
PfoI TCCNGGA 1 cut(s) 118
PkrI GCNGC 3 cut(s) 368, 463, 742
Ple19I CGATCG 1 cut(s) 174
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
Psp6I CCWGG 1 cut(s) 16
PspFI CCCAGC 1 cut(s) 181
PspGI CCWGG 1 cut(s) 16
PspN4I GGNNCC 3 cut(s) 478, 909, 1002
PspPI GGNCC 3 cut(s) 811, 889, 990
PsrI GAACNNNNNNTAC 2 cut(s) 469, 501
PvuI CGATCG 1 cut(s) 174
RruI TCGCGA 1 cut(s) 65
RsaI GTAC 3 cut(s) 326, 800, 1002
RsaNI GTAC 3 cut(s) 325, 799, 1001
RseI CAYNNNNRTG 1 cut(s) 350
SaqAI TTAA 3 cut(s) 806, 1052, 1067
SatI GCNGC 3 cut(s) 367, 462, 741
Sau3AI GATC 5 cut(s) 45, 78, 171, 579, 832
Sau96I GGNCC 3 cut(s) 811, 889, 990
SchI GAGTC 1 cut(s) 334
ScrFI CCNGG 4 cut(s) 18, 83, 120, 814
SduI GDGCHC 3 cut(s) 27, 137, 964
SfaNI GCATC 1 cut(s) 189
SfcI CTRYAG 2 cut(s) 295, 675
SinI GGWCC 2 cut(s) 889, 990
SmiMI CAYNNNNRTG 1 cut(s) 350
SmlI CTYRAG 1 cut(s) 1028
SmoI CTYRAG 1 cut(s) 1028
Sse9I AATT 8 cut(s) 310, 438, 637, 649, 662, 744, 1049, 1055
SsiI CCGC 6 cut(s) 398, 459, 474, 536, 600, 659
SspI AATATT 1 cut(s) 288
SspMI CTAG 3 cut(s) 306, 720, 1081
StyD4I CCNGG 4 cut(s) 16, 81, 118, 812
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 2 cut(s) 532, 885
TaiI ACGT 3 cut(s) 71, 99, 434
TaqI TCGA 3 cut(s) 428, 578, 938
TasI AATT 8 cut(s) 310, 438, 637, 649, 662, 744, 1049, 1055
TatI WGTACW 1 cut(s) 798
TfiI GAWTC 2 cut(s) 214, 575
Tru1I TTAA 3 cut(s) 806, 1052, 1067
Tru9I TTAA 3 cut(s) 806, 1052, 1067
TscAI CASTG 3 cut(s) 195, 352, 380
TseI GCWGC 3 cut(s) 366, 461, 740
TspDTI ATGAA 5 cut(s) 61, 633, 660, 678, 773
TspRI CASTG 3 cut(s) 195, 352, 380
VneI GTGCAC 1 cut(s) 960
VpaK11BI GGWCC 2 cut(s) 889, 990
XagI CCTNNNNNAGG 3 cut(s) 207, 298, 915
XapI RAATTY 4 cut(s) 310, 438, 637, 649
XmnI GAANNNNTTC 1 cut(s) 314
XspI CTAG 3 cut(s) 306, 720, 1081
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.