Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014789.1

Orthogroup ID

OG0009793

Physical Location & Seq

Genomic Coordinates Reverse (-)

18900 .. 21022

Gene Structure 2123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014789.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atggtgatttcgggggttgcaggcactatttcacagttggttctcatgcccttactggctcctgttttaggagaggagaggttactttcgatagggcttctttttggctgtgcacatatgtttttttatggccttgcgtggtccttctgggttccgtatgctgctgctatgttctctatcttttttgtgtttgcacagccatgtatgcgaagcattgtatctaaacaagttgggccgtctgagcagggaaaggctcaagggtgcatttcaggcatatgctcctttgcaaatgttatatctccctttgctttctctcctctaacagctttgttcctgtctgaaaaggcgccatttaattttcctggttttagtatcacatgcgttggatttgctgcgactaagatctccgtcatcggcgccgacaacgttggcctggccatcgcccagcccattctagccggcaacgttggcctggccatcgcccagcccattctaacccaggacctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

169

Amino Acids

17.74

Weight (kDa)

6.52

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42210 AT5G42210
fragaria_vesca	FvH4_2g37910 FvH4_2g37910
malus_domestica	MD08G1007300.v1.1 MD15G1006500.v1.1
prunus_persica	Prupe.1G359100_v2.0.a1
pyrus_communis	pycom08g00590 pycom15g00510
rosa_chinensis	RchiOBHm_Chr6g0303701
rosa_laevigata	RLG00000011054
rosa_multiflora	Rmu_co8304199.1_g000001 Rmu_sc0014789.1_g000006
rosa_roxburghii	Rroxscaffold_7G00164470
rosa_rugosa	Rorug06G0324100 Rorug06G0324100
rosa_samantha	Rh6AG438400 Rh6BG464700 Rh6CG450700 Rh6DG437400
rosa_wichuraiana	Rw6G037940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	346, 416
AclI	AACGTT	2 cut(s)	426, 465
AcoI	YGGCCR	2 cut(s)	435, 474
AcyI	GRCGYC	2 cut(s)	347, 417
AfiI	CCNNNNNNNGG	1 cut(s)	68
AjnI	CCWGG	4 cut(s)	361, 432, 471, 498
AluBI	AGCT	1 cut(s)	326
AluI	AGCT	1 cut(s)	326
Alw21I	GWGCWC	1 cut(s)	115
Alw44I	GTGCAC	1 cut(s)	111
AoxI	GGCC	6 cut(s)	130, 233, 430, 435, 469, 474
ApaLI	GTGCAC	1 cut(s)	111
ApeKI	GCWGC	3 cut(s)	161, 164, 392
AspLEI	GCGC	2 cut(s)	349, 419
AspS9I	GGNCC	3 cut(s)	141, 233, 502
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	2 cut(s)	141, 502
BaeGI	GKGCMC	1 cut(s)	115
BalI	TGGCCA	2 cut(s)	437, 476
BanI	GGYRCC	2 cut(s)	346, 416
Bbv12I	GWGCWC	1 cut(s)	115
BbvI	GCAGC	3 cut(s)	148, 151, 379
BccI	CCATC	2 cut(s)	446, 485
BceAI	ACGGC	1 cut(s)	220
BciT130I	CCWGG	4 cut(s)	363, 434, 473, 500
BfaI	CTAG	1 cut(s)	455
BfoI	RGCGCY	2 cut(s)	350, 420
BglII	AGATCT	1 cut(s)	402
BisI	GCNGC	3 cut(s)	162, 165, 393
BlsI	GCNGC	3 cut(s)	163, 166, 394
Bme1390I	CCNGG	4 cut(s)	363, 434, 473, 500
Bme18I	GGWCC	2 cut(s)	141, 502
BmgT120I	GGNCC	3 cut(s)	141, 233, 502
BmiI	GGNNCC	4 cut(s)	60, 153, 348, 418
BmrFI	CCNGG	4 cut(s)	363, 434, 473, 500
BpuEI	CTTGAG	1 cut(s)	240
BsaHI	GRCGYC	2 cut(s)	347, 417
BsaJI	CCNNGG	1 cut(s)	498
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse118I	RCCGGY	1 cut(s)	458
Bse1I	ACTGG	1 cut(s)	60
BseBI	CCWGG	4 cut(s)	363, 434, 473, 500
BseDI	CCNNGG	1 cut(s)	498
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	60
BseRI	GAGGAG	2 cut(s)	89, 306
BseSI	GKGCMC	1 cut(s)	115
BseXI	GCAGC	3 cut(s)	148, 151, 379
BseYI	CCCAGC	2 cut(s)	444, 483
BshFI	GGCC	6 cut(s)	132, 235, 432, 437, 471, 476
BshNI	GGYRCC	2 cut(s)	346, 416
BsiHKAI	GWGCWC	1 cut(s)	115
BsiSI	CCGG	1 cut(s)	459
BslI	CCNNNNNNNGG	1 cut(s)	68
BsnI	GGCC	6 cut(s)	132, 235, 432, 437, 471, 476
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp143I	GATC	1 cut(s)	402
BspANI	GGCC	6 cut(s)	132, 235, 432, 437, 471, 476
BspCNI	CTCAG	1 cut(s)	232
BspLI	GGNNCC	4 cut(s)	60, 153, 348, 418
BspT107I	GGYRCC	2 cut(s)	346, 416
BsrFI	RCCGGY	1 cut(s)	458
BsrI	ACTGG	1 cut(s)	60
BssAI	RCCGGY	1 cut(s)	458
BssECI	CCNNGG	1 cut(s)	498
BssMI	GATC	1 cut(s)	402
BssNI	GRCGYC	2 cut(s)	347, 417
Bst2UI	CCWGG	4 cut(s)	363, 434, 473, 500
Bst4CI	ACNGT	1 cut(s)	36
BstACI	GRCGYC	2 cut(s)	347, 417
BstC8I	GCNNGC	2 cut(s)	22, 460
BstDEI	CTNAG	2 cut(s)	240, 399
BstENI	CCTNNNNNAGG	1 cut(s)	66
BstH2I	RGCGCY	2 cut(s)	350, 420
BstHHI	GCGC	2 cut(s)	349, 419
BstKTI	GATC	1 cut(s)	405
BstMBI	GATC	1 cut(s)	402
BstMWI	GCNNNNNNNGC	4 cut(s)	205, 241, 270, 468
BstNI	CCWGG	4 cut(s)	363, 434, 473, 500
BstNSI	RCATGY	1 cut(s)	381
BstSCI	CCNGG	4 cut(s)	361, 432, 471, 498
BstSLI	GKGCMC	1 cut(s)	115
BstV1I	GCAGC	3 cut(s)	148, 151, 379
BstX2I	RGATCY	1 cut(s)	402
BstYI	RGATCY	1 cut(s)	402
BsuRI	GGCC	6 cut(s)	132, 235, 432, 437, 471, 476
BtgZI	GCGATG	2 cut(s)	424, 463
Cac8I	GCNNGC	2 cut(s)	22, 460
CfoI	GCGC	2 cut(s)	349, 419
Cfr10I	RCCGGY	1 cut(s)	458
Cfr13I	GGNCC	3 cut(s)	141, 233, 502
CviAII	CATG	3 cut(s)	46, 201, 378
DdeI	CTNAG	2 cut(s)	240, 399
DinI	GGCGCC	2 cut(s)	348, 418
DpnI	GATC	1 cut(s)	404
DpnII	GATC	1 cut(s)	402
EaeI	YGGCCR	2 cut(s)	435, 474
Eco47I	GGWCC	2 cut(s)	141, 502
EcoNI	CCTNNNNNAGG	1 cut(s)	66
EcoO109I	RGGNCCY	1 cut(s)	502
EcoRII	CCWGG	4 cut(s)	361, 432, 471, 498
EgeI	GGCGCC	2 cut(s)	348, 418
EheI	GGCGCC	2 cut(s)	348, 418
FaeI	CATG	3 cut(s)	49, 204, 381
FatI	CATG	3 cut(s)	45, 200, 377
FauNDI	CATATG	2 cut(s)	117, 275
Fnu4HI	GCNGC	3 cut(s)	162, 165, 393
Fsp4HI	GCNGC	3 cut(s)	162, 165, 393
FspBI	CTAG	1 cut(s)	455
GlaI	GCGC	2 cut(s)	348, 418
GluI	GCNGC	3 cut(s)	162, 165, 393
GsaI	CCCAGC	2 cut(s)	448, 487
HaeII	RGCGCY	2 cut(s)	350, 420
HaeIII	GGCC	6 cut(s)	132, 235, 432, 437, 471, 476
HapII	CCGG	1 cut(s)	459
HhaI	GCGC	2 cut(s)	349, 419
Hin1I	GRCGYC	2 cut(s)	347, 417
Hin1II	CATG	3 cut(s)	49, 204, 381
Hin6I	GCGC	2 cut(s)	347, 417
HinP1I	GCGC	2 cut(s)	347, 417
HpaII	CCGG	1 cut(s)	459
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	3 cut(s)	241, 340, 509
Hpy8I	GTNNAC	1 cut(s)	113
HpyAV	CCTTC	1 cut(s)	154
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4IV	ACGT	2 cut(s)	426, 465
HpyCH4V	TGCA	5 cut(s)	20, 113, 194, 264, 287
HpyF10VI	GCNNNNNNNGC	4 cut(s)	205, 241, 270, 468
HpyF3I	CTNAG	2 cut(s)	240, 399
HpySE526I	ACGT	2 cut(s)	426, 465
Hsp92I	GRCGYC	2 cut(s)	347, 417
Hsp92II	CATG	3 cut(s)	49, 204, 381
HspAI	GCGC	2 cut(s)	347, 417
KasI	GGCGCC	2 cut(s)	346, 416
KroI	GCCGGC	1 cut(s)	458
KroNI	GCCGGC	1 cut(s)	460
Kzo9I	GATC	1 cut(s)	402
LmnI	GCTCC	2 cut(s)	64, 284
Lsp1109I	GCAGC	3 cut(s)	148, 151, 379
MaeI	CTAG	1 cut(s)	455
MaeII	ACGT	2 cut(s)	426, 465
MaeIII	GTNAC	1 cut(s)	81
MalI	GATC	1 cut(s)	404
MboI	GATC	1 cut(s)	402
MflI	RGATCY	1 cut(s)	402
MhlI	GDGCHC	1 cut(s)	115
MlsI	TGGCCA	2 cut(s)	437, 476
MluCI	AATT	1 cut(s)	355
MluNI	TGGCCA	2 cut(s)	437, 476
Mly113I	GGCGCC	2 cut(s)	347, 417
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	3 cut(s)	67, 72, 327
Mox20I	TGGCCA	2 cut(s)	437, 476
MroNI	GCCGGC	1 cut(s)	458
MscI	TGGCCA	2 cut(s)	437, 476
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	1 cut(s)	199
Msp20I	TGGCCA	2 cut(s)	437, 476
MspI	CCGG	1 cut(s)	459
MspR9I	CCNGG	4 cut(s)	363, 434, 473, 500
MvaI	CCWGG	4 cut(s)	363, 434, 473, 500
MwoI	GCNNNNNNNGC	4 cut(s)	205, 241, 270, 468
NaeI	GCCGGC	1 cut(s)	460
NarI	GGCGCC	2 cut(s)	347, 417
NdeI	CATATG	2 cut(s)	117, 275
NdeII	GATC	1 cut(s)	402
NgoMIV	GCCGGC	1 cut(s)	458
NlaIII	CATG	3 cut(s)	49, 204, 381
NlaIV	GGNNCC	4 cut(s)	60, 153, 348, 418
NspI	RCATGY	1 cut(s)	381
PdiI	GCCGGC	1 cut(s)	460
PkrI	GCNGC	3 cut(s)	163, 166, 394
PluTI	GGCGCC	2 cut(s)	350, 420
PpuMI	RGGWCCY	1 cut(s)	502
Psp1406I	AACGTT	2 cut(s)	426, 465
Psp5II	RGGWCCY	1 cut(s)	502
Psp6I	CCWGG	4 cut(s)	361, 432, 471, 498
PspFI	CCCAGC	2 cut(s)	444, 483
PspGI	CCWGG	4 cut(s)	361, 432, 471, 498
PspN4I	GGNNCC	4 cut(s)	60, 153, 348, 418
PspPI	GGNCC	3 cut(s)	141, 233, 502
PspPPI	RGGWCCY	1 cut(s)	502
PsuI	RGATCY	1 cut(s)	402
RseI	CAYNNNNRTG	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	3 cut(s)	162, 165, 393
Sau3AI	GATC	1 cut(s)	402
Sau96I	GGNCC	3 cut(s)	141, 233, 502
ScrFI	CCNGG	4 cut(s)	363, 434, 473, 500
SduI	GDGCHC	1 cut(s)	115
SetI	ASST	5 cut(s)	83, 328, 429, 468, 507
SfoI	GGCGCC	2 cut(s)	348, 418
SinI	GGWCC	2 cut(s)	141, 502
SmiMI	CAYNNNNRTG	1 cut(s)	199
SmlI	CTYRAG	1 cut(s)	255
SmoI	CTYRAG	1 cut(s)	255
Sse9I	AATT	1 cut(s)	355
SspDI	GGCGCC	2 cut(s)	346, 416
SspMI	CTAG	1 cut(s)	455
StyD4I	CCNGG	4 cut(s)	361, 432, 471, 498
TaaI	ACNGT	1 cut(s)	36
TaiI	ACGT	2 cut(s)	429, 468
TaqI	TCGA	1 cut(s)	89
TasI	AATT	1 cut(s)	355
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TseI	GCWGC	3 cut(s)	161, 164, 392
TspGWI	ACGGA	2 cut(s)	144, 397
VneI	GTGCAC	1 cut(s)	111
VpaK11BI	GGWCC	2 cut(s)	141, 502
XagI	CCTNNNNNAGG	1 cut(s)	66
XceI	RCATGY	1 cut(s)	381
XspI	CTAG	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.