Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8304199.1

Orthogroup ID

OG0009793

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 902

Gene Structure 902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8304199.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

gatttagacctaatcgagaagtggttacaggaatattagcctacagcaggactaggaatttcttctatgcgtactttgtggccaagactctcaccgccatggtctgcgaaggcagcgttcactgcctcgcccttgcctatgtggcggataatgttccagaaggacgacgagcctcgacgtttggaattctatcagggattagttcctctgccttcgtctgcggaaccctatttactcgttttgtatccactacctcaatgtttcaggtggcgacaacggtggcggttgtagcagtagtgtacatgaggattttcctaccggattcgattatagacgataacatttccgctccattgctctcaaatgaaaacccaaaagtttcgaattcggatgaaaattcaaatgcggaattgcagtcctctacagctttaccttcattacctgatataatcgcattgttgaaaactagccctacattttcccaagctgcaattgttgcgtttttcagccacctggccgatgttggccttcatgcttcactattggtgagtgaagagcaacatttagact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

189

Amino Acids

20.38

Weight (kDa)

5.27

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42210 AT5G42210
fragaria_vesca	FvH4_2g37910 FvH4_2g37910
malus_domestica	MD08G1007300.v1.1 MD15G1006500.v1.1
prunus_persica	Prupe.1G359100_v2.0.a1
pyrus_communis	pycom08g00590 pycom15g00510
rosa_chinensis	RchiOBHm_Chr6g0303701
rosa_laevigata	RLG00000011054
rosa_multiflora	Rmu_co8304199.1_g000001 Rmu_sc0014789.1_g000006
rosa_roxburghii	Rroxscaffold_7G00164470
rosa_rugosa	Rorug06G0324100 Rorug06G0324100
rosa_samantha	Rh6AG438400 Rh6BG464700 Rh6CG450700 Rh6DG437400
rosa_wichuraiana	Rw6G037940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	349
AciI	CCGC	6 cut(s)	95, 145, 221, 283, 347, 406
AcoI	YGGCCR	2 cut(s)	80, 515
AcsI	RAATTY	4 cut(s)	57, 185, 384, 396
AfaI	GTAC	2 cut(s)	73, 301
AfiI	CCNNNNNNNGG	1 cut(s)	47
AgsI	TTSAA	2 cut(s)	401, 462
AjnI	CCWGG	1 cut(s)	512
AluBI	AGCT	2 cut(s)	427, 487
AluI	AGCT	2 cut(s)	427, 487
AoxI	GGCC	3 cut(s)	80, 515, 525
ApeKI	GCWGC	2 cut(s)	113, 487
ApoI	RAATTY	4 cut(s)	57, 185, 384, 396
Asp700I	GAANNNNTTC	1 cut(s)	61
AsuHPI	GGTGA	2 cut(s)	84, 558
AsuII	TTCGAA	1 cut(s)	382
BalI	TGGCCA	1 cut(s)	82
BbvI	GCAGC	2 cut(s)	125, 474
BciT130I	CCWGG	1 cut(s)	514
BciVI	GTATCC	1 cut(s)	255
BfaI	CTAG	2 cut(s)	53, 467
BfmI	CTRYAG	2 cut(s)	42, 422
BfuI	GTATCC	1 cut(s)	255
BglI	GCCNNNNNGGC	1 cut(s)	142
BisI	GCNGC	2 cut(s)	114, 488
BlsI	GCNGC	2 cut(s)	115, 489
Bme1390I	CCNGG	1 cut(s)	514
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	514
Bpu14I	TTCGAA	1 cut(s)	382
BsaJI	CCNNGG	1 cut(s)	98
BsaWI	WCCGGW	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
Bse3DI	GCAATG	1 cut(s)	352
BseBI	CCWGG	1 cut(s)	514
BseDI	CCNNGG	1 cut(s)	98
BseGI	GGATG	1 cut(s)	396
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseMI	GCAATG	1 cut(s)	352
BseXI	GCAGC	2 cut(s)	125, 474
BshFI	GGCC	3 cut(s)	82, 517, 527
BsiSI	CCGG	1 cut(s)	319
BslI	CCNNNNNNNGG	1 cut(s)	47
BsnI	GGCC	3 cut(s)	82, 517, 527
Bsp119I	TTCGAA	1 cut(s)	382
Bsp1407I	TGTACA	1 cut(s)	299
Bsp19I	CCATGG	1 cut(s)	98
BspACI	CCGC	6 cut(s)	95, 145, 221, 283, 347, 406
BspANI	GGCC	3 cut(s)	82, 517, 527
BspLI	GGNNCC	1 cut(s)	225
BspQI	GCTCTTC	1 cut(s)	548
BspT104I	TTCGAA	1 cut(s)	382
BsrBI	CCGCTC	1 cut(s)	349
BsrDI	GCAATG	1 cut(s)	352
BsrGI	TGTACA	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	98
BssT1I	CCWWGG	1 cut(s)	98
Bst2UI	CCWGG	1 cut(s)	514
Bst4CI	ACNGT	1 cut(s)	279
Bst6I	CTCTTC	1 cut(s)	548
BstAPI	GCANNNNNTGC	1 cut(s)	496
BstAUI	TGTACA	1 cut(s)	299
BstBI	TTCGAA	1 cut(s)	382
BstDSI	CCRYGG	1 cut(s)	98
BstENI	CCTNNNNNAGG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	396
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 122, 142, 289, 496
BstNI	CCWGG	1 cut(s)	514
BstSCI	CCNGG	1 cut(s)	512
BstSFI	CTRYAG	2 cut(s)	42, 422
BstV1I	GCAGC	2 cut(s)	125, 474
BsuI	GTATCC	1 cut(s)	255
BsuRI	GGCC	3 cut(s)	82, 517, 527
BtgI	CCRYGG	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	396
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
Csp6I	GTAC	2 cut(s)	72, 300
CviAII	CATG	3 cut(s)	99, 303, 532
CviJI	RGCY	9 cut(s)	40, 82, 172, 427, 470, 487, 509, 517, 527
CviKI_1	RGCY	9 cut(s)	40, 82, 172, 427, 470, 487, 509, 517, 527
CviQI	GTAC	2 cut(s)	72, 300
EaeI	YGGCCR	2 cut(s)	80, 515
Eam1104I	CTCTTC	1 cut(s)	548
EarI	CTCTTC	1 cut(s)	548
EciI	GGCGGA	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	98
EcoNI	CCTNNNNNAGG	1 cut(s)	45
EcoRI	GAATTC	2 cut(s)	185, 384
EcoRII	CCWGG	1 cut(s)	512
EcoT14I	CCWWGG	1 cut(s)	98
ErhI	CCWWGG	1 cut(s)	98
FaeI	CATG	3 cut(s)	102, 306, 535
FaiI	YATR	7 cut(s)	68, 100, 140, 304, 331, 448, 533
FatI	CATG	3 cut(s)	98, 302, 531
Fnu4HI	GCNGC	2 cut(s)	114, 488
FokI	GGATG	1 cut(s)	403
Fsp4HI	GCNGC	2 cut(s)	114, 488
FspBI	CTAG	2 cut(s)	53, 467
GluI	GCNGC	2 cut(s)	114, 488
HaeIII	GGCC	3 cut(s)	82, 517, 527
HapII	CCGG	1 cut(s)	319
Hin1II	CATG	3 cut(s)	102, 306, 535
HinfI	GANTC	2 cut(s)	87, 322
HpaII	CCGG	1 cut(s)	319
HphI	GGTGA	2 cut(s)	84, 558
Hpy166II	GTNNAC	2 cut(s)	120, 300
Hpy188I	TCNGA	1 cut(s)	390
Hpy188III	TCNNGA	2 cut(s)	16, 157
Hpy8I	GTNNAC	2 cut(s)	120, 300
Hpy99I	CGWCG	2 cut(s)	170, 180
HpyAV	CCTTC	5 cut(s)	103, 154, 222, 443, 538
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	2 cut(s)	414, 490
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 122, 142, 289, 496
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	3 cut(s)	102, 306, 535
LguI	GCTCTTC	1 cut(s)	548
LmnI	GCTCC	1 cut(s)	354
LpnPI	CCDG	9 cut(s)	14, 33, 170, 179, 250, 332, 455, 499, 526
Lsp1109I	GCAGC	2 cut(s)	125, 474
MaeI	CTAG	2 cut(s)	53, 467
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	1 cut(s)	24
MbiI	CCGCTC	1 cut(s)	349
MboII	GAAGA	2 cut(s)	54, 565
MfeI	CAATTG	1 cut(s)	491
MlsI	TGGCCA	1 cut(s)	82
MluCI	AATT	6 cut(s)	57, 185, 384, 396, 409, 491
MluNI	TGGCCA	1 cut(s)	82
MlyI	GAGTC	1 cut(s)	81
MnlI	CCTC	6 cut(s)	136, 183, 216, 264, 299, 429
Mox20I	TGGCCA	1 cut(s)	82
MroXI	GAANNNNTTC	1 cut(s)	61
MscI	TGGCCA	1 cut(s)	82
MslI	CAYNNNNRTG	1 cut(s)	97
Msp20I	TGGCCA	1 cut(s)	82
MspI	CCGG	1 cut(s)	319
MspR9I	CCNGG	1 cut(s)	514
MunI	CAATTG	1 cut(s)	491
MvaI	CCWGG	1 cut(s)	514
MwoI	GCNNNNNNNGC	5 cut(s)	113, 122, 142, 289, 496
NcoI	CCATGG	1 cut(s)	98
NlaIII	CATG	3 cut(s)	102, 306, 535
NlaIV	GGNNCC	1 cut(s)	225
NspV	TTCGAA	1 cut(s)	382
PciSI	GCTCTTC	1 cut(s)	548
PdmI	GAANNNNTTC	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	2 cut(s)	115, 489
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	512
PspGI	CCWGG	1 cut(s)	512
PspN4I	GGNNCC	1 cut(s)	225
PsrI	GAACNNNNNNTAC	2 cut(s)	216, 248
RsaI	GTAC	2 cut(s)	73, 301
RsaNI	GTAC	2 cut(s)	72, 300
RseI	CAYNNNNRTG	1 cut(s)	97
SapI	GCTCTTC	1 cut(s)	548
SatI	GCNGC	2 cut(s)	114, 488
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	1 cut(s)	514
SetI	ASST	9 cut(s)	12, 181, 256, 269, 429, 435, 444, 489, 515
SfcI	CTRYAG	2 cut(s)	42, 422
SfuI	TTCGAA	1 cut(s)	382
SmiMI	CAYNNNNRTG	1 cut(s)	97
Sse9I	AATT	6 cut(s)	57, 185, 384, 396, 409, 491
SsiI	CCGC	6 cut(s)	95, 145, 221, 283, 347, 406
SspI	AATATT	1 cut(s)	35
SspMI	CTAG	2 cut(s)	53, 467
StyD4I	CCNGG	1 cut(s)	512
StyI	CCWWGG	1 cut(s)	98
TaaI	ACNGT	1 cut(s)	279
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	4 cut(s)	15, 175, 325, 382
TasI	AATT	6 cut(s)	57, 185, 384, 396, 409, 491
TatI	WGTACW	1 cut(s)	299
TfiI	GAWTC	1 cut(s)	322
TscAI	CASTG	1 cut(s)	127
TseI	GCWGC	2 cut(s)	113, 487
TspDTI	ATGAA	4 cut(s)	380, 407, 425, 520
TspRI	CASTG	1 cut(s)	127
XagI	CCTNNNNNAGG	1 cut(s)	45
XapI	RAATTY	4 cut(s)	57, 185, 384, 396
XmnI	GAANNNNTTC	1 cut(s)	61
XspI	CTAG	2 cut(s)	53, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.