RchiOBHm_Chr6g0303701

Hippocampus abundant transcript 1

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
63347252 .. 63352330
5079 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27285

Sequence Viewer

Length: 1338 bp
ATGGAGAAGTTATCACCAGGGGGGCTCAGCCACCTTTACATGACGATCTTTCTGCACAACTTCGCGACGTTCATGGTGATCCCGGCCATTACCGACGTTACAATGACTGCGCTTTGTCCCGGAAGAGACGAGTGCTCTATCGCTATTTACCTCACCGGATTTCAACAAGCGATCGTAGGGCTGGGAACACTGGTGATGATGCCTTTGGTAGGGAATCTCTCAGACAAATGTGGGAGAAAAGCTCTGCTCACACTTCCAATGATTTTCACTATAATCCCCTTAGGAATATTAGCCTACAGCAGGACTAGGAATTTCTTCTATGCGTACTTTGTGGCCAAGACTCTCACCGCCATGGTCTGCGAAGGCAGCGTTCACTGCCTCGCCCTTGCCTATGTGGCGGATAATGTTCCAGAAGGACGGCGAGCCTCGACGTTTGGAATTCTATCAGGGATTAGTTCATCTGCCTTCGTCTGCGGAACCCTATTTACTCGTTTTGTATCCACTACCTCAATGTTTCAGGTGGCGACAACGGTGGCGGTTGTAGCAGTAATGTACATGAGGATTTTCCTACCGGATTCGATTATAGACGATAACATTTCCGCTCCATTGCTCTCAAATGAAAACCCAAAAGTTTCGAATTCGGATGAAAATTCAAATGCGGAATTGCAGTCCTCTACAGCTTTACCTTCATTACCTGATATAATCGCATTGTTGAAAACTAGCCCTACATTTTCCCAAGCTGCAATTGTTGCGTTTTTCAGCCACCTGGCCGATGTTGGCCTTCATGCTTCACTATTGTATTATTTAAAGGCCCGGTTTCACTTCAACAAGGATCAGTTTGCTGACCTAATGGTGATTTCGGGGGTTGCAGGCACTATTTCACAGTTGGTTCTCATGCCCTTACTGGCTCCTGTTTTAGGAGAGGAGAGGTTACTTTCGATAGGGCTTCTTTTTGGCTGTGCACATATGTTTTTTTATGGCCTTGCGTGGTCCTTCTGGGTTCCGTATGCTGCTGCTATGTTCTCTATCTTTTTTGTGTTTGCACAGCCATGTATGCGAAGCATTGTATCTAAACAAGTTGGGCCGTCTGAGCAGGGAAAGGCTCAAGGGTGCATTTCAGGCATATGCTCCTTTGCAAATGTTATATCTCCCTTTGCTTTCTCTCCTCTAACAGCTTTGTTCCTGTCTGAAAAGGCGCCATTTAATTTTCCTGGTTTTAGTATCACATGTGTTGGATTTGCTGCGATGATAGCCTTTATTCAAAGCGTGATGATAAAGGCTGCTCCTCCCATATCAAGTGAACGGGTCAGCAGCAATTGCAATTACATGGAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

445

Amino Acids

48.07

Weight (kDa)

6.64

Isoelectric Point (pI)

40.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 13 - 384 5e-26 Major Facilitator Superfamily
MFS_1 PF07690 250 - 417 1.9e-08 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1195
AccBSI CCGCTC 1 cut(s) 602
AccII CGCG 1 cut(s) 65
AciI CCGC 6 cut(s) 348, 398, 474, 536, 600, 659
AclWI GGATC 2 cut(s) 73, 840
AcoI YGGCCR 3 cut(s) 84, 333, 768
AcsI RAATTY 4 cut(s) 310, 438, 637, 649
AcyI GRCGYC 1 cut(s) 1196
AfaI GTAC 2 cut(s) 326, 554
AfiI CCNNNNNNNGG 3 cut(s) 209, 300, 917
AflIII ACRYGT 1 cut(s) 1226
AgsI TTSAA 5 cut(s) 164, 654, 715, 826, 1262
AjnI CCWGG 3 cut(s) 16, 765, 1210
AluBI AGCT 4 cut(s) 242, 680, 740, 1175
AluI AGCT 4 cut(s) 242, 680, 740, 1175
Alw21I GWGCWC 2 cut(s) 137, 964
Alw26I GTCTC 1 cut(s) 120
Alw44I GTGCAC 1 cut(s) 960
AlwI GGATC 2 cut(s) 73, 840
AoxI GGCC 7 cut(s) 84, 333, 768, 778, 810, 979, 1082
ApaLI GTGCAC 1 cut(s) 960
ApeKI GCWGC 7 cut(s) 366, 740, 1010, 1013, 1241, 1280, 1311
ApoI RAATTY 4 cut(s) 310, 438, 637, 649
Asp700I GAANNNNTTC 1 cut(s) 314
AspLEI GCGC 2 cut(s) 112, 1198
AspS9I GGNCC 3 cut(s) 811, 990, 1082
AsuC2I CCSGG 3 cut(s) 83, 120, 814
AsuHPI GGTGA 6 cut(s) 6, 88, 145, 205, 337, 865
AsuII TTCGAA 1 cut(s) 635
AvaII GGWCC 1 cut(s) 990
AxyI CCTNAGG 1 cut(s) 280
BaeGI GKGCMC 1 cut(s) 964
BalI TGGCCA 1 cut(s) 335
BanI GGYRCC 1 cut(s) 1195
BanII GRGCYC 1 cut(s) 27
Bbv12I GWGCWC 2 cut(s) 137, 964
BbvI GCAGC 7 cut(s) 378, 727, 997, 1000, 1228, 1267, 1323
BceAI ACGGC 2 cut(s) 434, 1069
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BciT130I CCWGG 3 cut(s) 18, 767, 1212
BciVI GTATCC 1 cut(s) 508
BcnI CCSGG 3 cut(s) 83, 120, 814
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 3 cut(s) 306, 720, 1336
BfmI CTRYAG 2 cut(s) 295, 675
BfoI RGCGCY 1 cut(s) 1199
BfuI GTATCC 1 cut(s) 508
BglI GCCNNNNNGGC 1 cut(s) 395
BisI GCNGC 7 cut(s) 367, 741, 1011, 1014, 1242, 1281, 1312
BlpI GCTNAGC 1 cut(s) 26
BlsI GCNGC 7 cut(s) 368, 742, 1012, 1015, 1243, 1282, 1313
Bme1390I CCNGG 6 cut(s) 18, 83, 120, 767, 814, 1212
Bme18I GGWCC 1 cut(s) 990
BmgT120I GGNCC 3 cut(s) 811, 990, 1082
BmiI GGNNCC 5 cut(s) 478, 909, 1002, 1197, 1332
BmrFI CCNGG 6 cut(s) 18, 83, 120, 767, 814, 1212
BmsI GCATC 1 cut(s) 189
BplI GAGNNNNNCTC 2 cut(s) 226, 258
Bpu1102I GCTNAGC 1 cut(s) 26
Bpu14I TTCGAA 1 cut(s) 635
BpuEI CTTGAG 1 cut(s) 1089
BpuMI CCSGG 3 cut(s) 83, 120, 814
BsaHI GRCGYC 1 cut(s) 1196
BsaJI CCNNGG 2 cut(s) 17, 351
BsaWI WCCGGW 2 cut(s) 155, 571
Bsc4I CCNNNNNNNGG 3 cut(s) 209, 300, 917
Bse1I ACTGG 2 cut(s) 195, 909
Bse21I CCTNAGG 1 cut(s) 280
Bse3DI GCAATG 1 cut(s) 605
BseBI CCWGG 3 cut(s) 18, 767, 1212
BseDI CCNNGG 2 cut(s) 17, 351
BseGI GGATG 1 cut(s) 649
BseLI CCNNNNNNNGG 3 cut(s) 209, 300, 917
BseMI GCAATG 1 cut(s) 605
BseMII CTCAG 3 cut(s) 40, 234, 1080
BseNI ACTGG 2 cut(s) 195, 909
BseRI GAGGAG 3 cut(s) 938, 1155, 1275
BseSI GKGCMC 1 cut(s) 964
BseXI GCAGC 7 cut(s) 378, 727, 997, 1000, 1228, 1267, 1323
BseYI CCCAGC 1 cut(s) 181
BsgI GTGCAG 1 cut(s) 38
Bsh1236I CGCG 1 cut(s) 65
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 7 cut(s) 86, 335, 770, 780, 812, 981, 1084
BshNI GGYRCC 1 cut(s) 1195
BsiEI CGRYCG 1 cut(s) 174
BsiHKAI GWGCWC 2 cut(s) 137, 964
BsiSI CCGG 5 cut(s) 83, 120, 156, 572, 814
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 3 cut(s) 209, 300, 917
BsmAI GTCTC 1 cut(s) 120
BsmBI CGTCTC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 102
BsnI GGCC 7 cut(s) 86, 335, 770, 780, 812, 981, 1084
Bsp119I TTCGAA 1 cut(s) 635
Bsp1286I GDGCHC 3 cut(s) 27, 137, 964
Bsp1407I TGTACA 1 cut(s) 552
Bsp143I GATC 4 cut(s) 45, 78, 171, 832
Bsp1720I GCTNAGC 1 cut(s) 26
Bsp19I CCATGG 1 cut(s) 351
Bsp68I TCGCGA 1 cut(s) 65
BspACI CCGC 6 cut(s) 348, 398, 474, 536, 600, 659
BspANI GGCC 7 cut(s) 86, 335, 770, 780, 812, 981, 1084
BspCNI CTCAG 3 cut(s) 39, 233, 1081
BspFNI CGCG 1 cut(s) 65
BspLI GGNNCC 5 cut(s) 478, 909, 1002, 1197, 1332
BspPI GGATC 2 cut(s) 73, 840
BspT104I TTCGAA 1 cut(s) 635
BspT107I GGYRCC 1 cut(s) 1195
BsrBI CCGCTC 1 cut(s) 602
BsrDI GCAATG 1 cut(s) 605
BsrGI TGTACA 1 cut(s) 552
BsrI ACTGG 2 cut(s) 195, 909
BssECI CCNNGG 2 cut(s) 17, 351
BssMI GATC 4 cut(s) 45, 78, 171, 832
BssNI GRCGYC 1 cut(s) 1196
BssT1I CCWWGG 1 cut(s) 351
Bst2UI CCWGG 3 cut(s) 18, 767, 1212
Bst4CI ACNGT 2 cut(s) 532, 885
Bst6I CTCTTC 1 cut(s) 118
BstACI GRCGYC 1 cut(s) 1196
BstAPI GCANNNNNTGC 2 cut(s) 749, 1317
BstAUI TGTACA 1 cut(s) 552
BstBI TTCGAA 1 cut(s) 635
BstC8I GCNNGC 2 cut(s) 423, 871
BstDEI CTNAG 4 cut(s) 26, 220, 280, 1089
BstDSI CCRYGG 1 cut(s) 351
BstENI CCTNNNNNAGG 3 cut(s) 207, 298, 915
BstF5I GGATG 1 cut(s) 649
BstFNI CGCG 1 cut(s) 65
BstH2I RGCGCY 1 cut(s) 1199
BstHHI GCGC 2 cut(s) 112, 1198
BstKTI GATC 4 cut(s) 48, 81, 174, 835
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 4 cut(s) 45, 78, 171, 832
BstMCI CGRYCG 1 cut(s) 174
BstNI CCWGG 3 cut(s) 18, 767, 1212
BstNSI RCATGY 1 cut(s) 1230
BstSCI CCNGG 6 cut(s) 16, 81, 118, 765, 812, 1210
BstSFI CTRYAG 2 cut(s) 295, 675
BstSLI GKGCMC 1 cut(s) 964
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 7 cut(s) 378, 727, 997, 1000, 1228, 1267, 1323
Bsu36I CCTNAGG 1 cut(s) 280
BsuI GTATCC 1 cut(s) 508
BsuRI GGCC 7 cut(s) 86, 335, 770, 780, 812, 981, 1084
BtgI CCRYGG 1 cut(s) 351
BtgZI GCGATG 1 cut(s) 1259
BtsCI GGATG 1 cut(s) 649
BtsI GCAGTG 1 cut(s) 373
BtsIMutI CAGTG 2 cut(s) 188, 373
BtuMI TCGCGA 1 cut(s) 65
Cac8I GCNNGC 2 cut(s) 423, 871
CfoI GCGC 2 cut(s) 112, 1198
Cfr13I GGNCC 3 cut(s) 811, 990, 1082
Csp6I GTAC 2 cut(s) 325, 553
CviAII CATG 9 cut(s) 40, 73, 352, 556, 785, 895, 1050, 1227, 1327
CviQI GTAC 2 cut(s) 325, 553
DdeI CTNAG 4 cut(s) 26, 220, 280, 1089
DinI GGCGCC 1 cut(s) 1197
DpnI GATC 4 cut(s) 47, 80, 173, 834
DpnII GATC 4 cut(s) 45, 78, 171, 832
DraI TTTAAA 1 cut(s) 807
EaeI YGGCCR 3 cut(s) 84, 333, 768
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
EciI GGCGGA 1 cut(s) 413
Eco130I CCWWGG 1 cut(s) 351
Eco24I GRGCYC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 990
Eco81I CCTNAGG 1 cut(s) 280
EcoNI CCTNNNNNAGG 3 cut(s) 207, 298, 915
EcoRI GAATTC 2 cut(s) 438, 637
EcoRII CCWGG 3 cut(s) 16, 765, 1210
EcoT14I CCWWGG 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 27
EgeI GGCGCC 1 cut(s) 1197
EheI GGCGCC 1 cut(s) 1197
ErhI CCWWGG 1 cut(s) 351
Esp3I CGTCTC 1 cut(s) 120
FaeI CATG 9 cut(s) 43, 76, 355, 559, 788, 898, 1053, 1230, 1330
FaqI GGGAC 1 cut(s) 102
FatI CATG 9 cut(s) 39, 72, 351, 555, 784, 894, 1049, 1226, 1326
FauNDI CATATG 2 cut(s) 966, 1124
Fnu4HI GCNGC 7 cut(s) 367, 741, 1011, 1014, 1242, 1281, 1312
FokI GGATG 1 cut(s) 656
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 7 cut(s) 367, 741, 1011, 1014, 1242, 1281, 1312
FspBI CTAG 3 cut(s) 306, 720, 1336
GlaI GCGC 2 cut(s) 111, 1197
GluI GCNGC 7 cut(s) 367, 741, 1011, 1014, 1242, 1281, 1312
GsaI CCCAGC 1 cut(s) 185
HaeII RGCGCY 1 cut(s) 1199
HaeIII GGCC 7 cut(s) 86, 335, 770, 780, 812, 981, 1084
HapII CCGG 5 cut(s) 83, 120, 156, 572, 814
HhaI GCGC 2 cut(s) 112, 1198
Hin1I GRCGYC 1 cut(s) 1196
Hin1II CATG 9 cut(s) 43, 76, 355, 559, 788, 898, 1053, 1230, 1330
Hin6I GCGC 2 cut(s) 110, 1196
HinP1I GCGC 2 cut(s) 110, 1196
HinfI GANTC 3 cut(s) 214, 340, 575
HpaII CCGG 5 cut(s) 83, 120, 156, 572, 814
HphI GGTGA 6 cut(s) 6, 88, 145, 205, 337, 865
Hpy166II GTNNAC 3 cut(s) 373, 962, 1301
Hpy188I TCNGA 4 cut(s) 223, 643, 1090, 1189
Hpy188III TCNNGA 2 cut(s) 64, 410
Hpy8I GTNNAC 3 cut(s) 373, 962, 1301
Hpy99I CGWCG 3 cut(s) 70, 98, 433
HpyAV CCTTC 6 cut(s) 356, 407, 475, 696, 791, 1003
HpyCH4III ACNGT 2 cut(s) 532, 885
HpyCH4IV ACGT 3 cut(s) 68, 96, 431
HpyCH4V TGCA 9 cut(s) 55, 667, 743, 869, 962, 1043, 1113, 1136, 1320
HpyF3I CTNAG 4 cut(s) 26, 220, 280, 1089
HpySE526I ACGT 3 cut(s) 68, 96, 431
Hsp92I GRCGYC 1 cut(s) 1196
Hsp92II CATG 9 cut(s) 43, 76, 355, 559, 788, 898, 1053, 1230, 1330
HspAI GCGC 2 cut(s) 110, 1196
KasI GGCGCC 1 cut(s) 1195
Kzo9I GATC 4 cut(s) 45, 78, 171, 832
LmnI GCTCC 4 cut(s) 607, 913, 1133, 1288
Lsp1109I GCAGC 7 cut(s) 378, 727, 997, 1000, 1228, 1267, 1323
LweI GCATC 1 cut(s) 189
MaeI CTAG 3 cut(s) 306, 720, 1336
MaeII ACGT 3 cut(s) 68, 96, 431
MaeIII GTNAC 2 cut(s) 97, 930
MalI GATC 4 cut(s) 47, 80, 173, 834
MbiI CCGCTC 1 cut(s) 602
MboI GATC 4 cut(s) 45, 78, 171, 832
MboII GAAGA 2 cut(s) 135, 307
MfeI CAATTG 2 cut(s) 744, 1315
MhlI GDGCHC 3 cut(s) 27, 137, 964
MlsI TGGCCA 1 cut(s) 335
MluCI AATT 9 cut(s) 310, 438, 637, 649, 662, 744, 1204, 1315, 1321
MluNI TGGCCA 1 cut(s) 335
Mly113I GGCGCC 1 cut(s) 1196
MlyI GAGTC 1 cut(s) 334
MmeI TCCRAC 1 cut(s) 1213
Mox20I TGGCCA 1 cut(s) 335
MroXI GAANNNNTTC 1 cut(s) 314
MscI TGGCCA 1 cut(s) 335
MseI TTAA 2 cut(s) 806, 1203
MslI CAYNNNNRTG 2 cut(s) 350, 1048
Msp20I TGGCCA 1 cut(s) 335
MspI CCGG 5 cut(s) 83, 120, 156, 572, 814
MspR9I CCNGG 6 cut(s) 18, 83, 120, 767, 814, 1212
MunI CAATTG 2 cut(s) 744, 1315
MvaI CCWGG 3 cut(s) 18, 767, 1212
MvnI CGCG 1 cut(s) 65
NarI GGCGCC 1 cut(s) 1196
NciI CCSGG 3 cut(s) 83, 120, 814
NcoI CCATGG 1 cut(s) 351
NdeI CATATG 2 cut(s) 966, 1124
NdeII GATC 4 cut(s) 45, 78, 171, 832
NlaIII CATG 9 cut(s) 43, 76, 355, 559, 788, 898, 1053, 1230, 1330
NlaIV GGNNCC 5 cut(s) 478, 909, 1002, 1197, 1332
NruI TCGCGA 1 cut(s) 65
NspI RCATGY 1 cut(s) 1230
NspV TTCGAA 1 cut(s) 635
PciI ACATGT 1 cut(s) 1226
PdmI GAANNNNTTC 1 cut(s) 314
PfeI GAWTC 2 cut(s) 214, 575
PfoI TCCNGGA 1 cut(s) 118
PkrI GCNGC 7 cut(s) 368, 742, 1012, 1015, 1243, 1282, 1313
Ple19I CGATCG 1 cut(s) 174
PleI GAGTC 1 cut(s) 334
PluTI GGCGCC 1 cut(s) 1199
PpsI GAGTC 1 cut(s) 334
PscI ACATGT 1 cut(s) 1226
Psp6I CCWGG 3 cut(s) 16, 765, 1210
PspFI CCCAGC 1 cut(s) 181
PspGI CCWGG 3 cut(s) 16, 765, 1210
PspN4I GGNNCC 5 cut(s) 478, 909, 1002, 1197, 1332
PspPI GGNCC 3 cut(s) 811, 990, 1082
PsrI GAACNNNNNNTAC 2 cut(s) 469, 501
PvuI CGATCG 1 cut(s) 174
RruI TCGCGA 1 cut(s) 65
RsaI GTAC 2 cut(s) 326, 554
RsaNI GTAC 2 cut(s) 325, 553
RseI CAYNNNNRTG 2 cut(s) 350, 1048
SaqAI TTAA 2 cut(s) 806, 1203
SatI GCNGC 7 cut(s) 367, 741, 1011, 1014, 1242, 1281, 1312
Sau3AI GATC 4 cut(s) 45, 78, 171, 832
Sau96I GGNCC 3 cut(s) 811, 990, 1082
SchI GAGTC 1 cut(s) 334
ScrFI CCNGG 6 cut(s) 18, 83, 120, 767, 814, 1212
SduI GDGCHC 3 cut(s) 27, 137, 964
SfaNI GCATC 1 cut(s) 189
SfcI CTRYAG 2 cut(s) 295, 675
SfoI GGCGCC 1 cut(s) 1197
SfuI TTCGAA 1 cut(s) 635
SinI GGWCC 1 cut(s) 990
SmiMI CAYNNNNRTG 2 cut(s) 350, 1048
SmlI CTYRAG 1 cut(s) 1104
SmoI CTYRAG 1 cut(s) 1104
Sse9I AATT 9 cut(s) 310, 438, 637, 649, 662, 744, 1204, 1315, 1321
SsiI CCGC 6 cut(s) 348, 398, 474, 536, 600, 659
SspDI GGCGCC 1 cut(s) 1195
SspI AATATT 1 cut(s) 288
SspMI CTAG 3 cut(s) 306, 720, 1336
StyD4I CCNGG 6 cut(s) 16, 81, 118, 765, 812, 1210
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 2 cut(s) 532, 885
TaiI ACGT 3 cut(s) 71, 99, 434
TaqI TCGA 4 cut(s) 428, 578, 635, 938
TasI AATT 9 cut(s) 310, 438, 637, 649, 662, 744, 1204, 1315, 1321
TatI WGTACW 1 cut(s) 552
TfiI GAWTC 2 cut(s) 214, 575
Tru1I TTAA 2 cut(s) 806, 1203
Tru9I TTAA 2 cut(s) 806, 1203
TscAI CASTG 2 cut(s) 195, 380
TseI GCWGC 7 cut(s) 366, 740, 1010, 1013, 1241, 1280, 1311
TspDTI ATGAA 6 cut(s) 61, 447, 633, 660, 678, 773
TspGWI ACGGA 1 cut(s) 993
TspRI CASTG 2 cut(s) 195, 380
VneI GTGCAC 1 cut(s) 960
VpaK11BI GGWCC 1 cut(s) 990
XagI CCTNNNNNAGG 3 cut(s) 207, 298, 915
XapI RAATTY 4 cut(s) 310, 438, 637, 649
XceI RCATGY 1 cut(s) 1230
XmnI GAANNNNTTC 1 cut(s) 314
XspI CTAG 3 cut(s) 306, 720, 1336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.