pycom15g00510

Hippocampus abundant transcript 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0009793
Physical Location & Seq
Reverse (-)
296567 .. 302374
5808 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g00510.3

Sequence Viewer

Length: 1239 bp
ATGTCTGCCCTTTGTCCTGGAAGAGATGAGTGCTCCATTGCTATCTACCTCACCGGATTTCAACAAGCGATCGTAGGGCTGGGAACACTGGTGATGATGCCATTGGTAGGTAACCTCTCAGACAAGTGTGGGAGAAAAGCTTTGCTTACACTGCCAATGATCCTCACAATTATCCCTTTGGGGATATTGGGGTACAGCAGGAGTAAGAGTTTCTTCTACGTCTACTTCGTGGTCAAAACTCTAACCGACATGGTTTGTGAAGGCAGCGTTCAGTGCCTCGCCCTTGCCTATGTGGCAGATAATGTGGCAGAAGGGCGGCGAGCCTCGACGTTCGGAGTCCTATCGGGGATTAGTTCCTCTGCATTTGTCTGCGGAACCTTATTCACTCGTTTCGTCTCCACTTCCTCCACTTTTCAGGTTGCGACTGTGGTGGCGGTTGTGGCAGTTACGTACATGAGGGTTTTCCTACCGGATTCCAACATAGACAAGAACCTTTCCGCTCCGTTACTGTCGGATGAAAAGATCAAAATTAAGGATTCAGCTGAAAATTCAAGTGCTCAGATATTGCAGCCAGCCAAAACATTGCCTTCCTTAAGTGATTTTATCTCCTTGTTGAAAACCAGCACGACGTTTTCGCAAGCTGCAATTGTTGCGTTTTTCAGTAATCTAGCGGATGTTGGCCTTCATGCTTCAATGATGTACTATCTAAAGGCGCATTTTCATTTCAACAAGGATCAGTTTGCTGACCTGATGGTTATTTCCGGGGTAGCAGGCACTGTTTCACAGCTGGTTCTAATGCCCTTGCTGGCTCCAGCTTTAGGAGAGGAGAGGCTACTTTCGATAGGCCTCATTTTTAGCTGTGCACATATGTTTCTTTATGGCATTGCGTGGTCCTTCTGGGTGCCATATGCTGCTGCCATGTTTTCCATCTTTTATGTGTTCGCACAACCATGCATGCGAAGCATTGTATCGAAACAAGTTGGTCCGTCTGAGCAGGGGAAGGCTCAAGGGTGCATTTCAGGCATATGTTCACTTGCAAATGTTATATCTCCGATTGCTTTCTCTCCTCTCACAGCCTTGTTCCTGTCCGAAAAGGCACCATTTAATTTCCCTGGATTTAGTCTCATTTGCGTTGGATTTGCTGCGATGATAGCCTTTATTCAAAGCGTGATGATTAGGGCTGCTCCTTCCCTTTCGAGCCAAAGGAACAGTGGCAATTGCAATCACACGGAGCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

413

Amino Acids

44.21

Weight (kDa)

8.4

Isoelectric Point (pI)

38.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 901, 1096
AccBSI CCGCTC 1 cut(s) 500
AccI GTMKAC 1 cut(s) 222
AciI CCGC 5 cut(s) 316, 372, 434, 498, 671
AclWI GGATC 2 cut(s) 154, 741
AcsI RAATTY 1 cut(s) 547
AfaI GTAC 3 cut(s) 194, 452, 701
AfiI CCNNNNNNNGG 2 cut(s) 107, 818
AflII CTTAAG 1 cut(s) 592
AgsI TTSAA 6 cut(s) 62, 552, 616, 693, 727, 1163
AjnI CCWGG 2 cut(s) 16, 1111
AluBI AGCT 6 cut(s) 140, 542, 641, 787, 815, 858
AluI AGCT 6 cut(s) 140, 542, 641, 787, 815, 858
Alw21I GWGCWC 3 cut(s) 35, 559, 865
Alw26I GTCTC 2 cut(s) 400, 1127
Alw44I GTGCAC 1 cut(s) 861
AlwI GGATC 2 cut(s) 154, 741
AlwNI CAGNNNCTG 1 cut(s) 776
AoxI GGCC 2 cut(s) 679, 844
ApaLI GTGCAC 1 cut(s) 861
ApeKI GCWGC 7 cut(s) 264, 568, 641, 911, 914, 1142, 1181
ApoI RAATTY 1 cut(s) 547
AspLEI GCGC 1 cut(s) 715
AspS9I GGNCC 2 cut(s) 891, 983
AsuC2I CCSGG 1 cut(s) 763
AsuHPI GGTGA 2 cut(s) 43, 103
AvaII GGWCC 2 cut(s) 891, 983
BaeGI GKGCMC 1 cut(s) 865
BanI GGYRCC 2 cut(s) 901, 1096
BanII GRGCYC 1 cut(s) 1236
Bbv12I GWGCWC 3 cut(s) 35, 559, 865
BbvI GCAGC 7 cut(s) 276, 580, 628, 898, 901, 1129, 1168
BccI CCATC 2 cut(s) 745, 935
BciT130I CCWGG 2 cut(s) 18, 1113
BcnI CCSGG 1 cut(s) 763
BcoDI GTCTC 2 cut(s) 400, 1127
BfaI CTAG 2 cut(s) 668, 1237
BfrI CTTAAG 1 cut(s) 592
BglI GCCNNNNNGGC 1 cut(s) 293
BisI GCNGC 8 cut(s) 265, 317, 569, 642, 912, 915, 1143, 1182
BlsI GCNGC 8 cut(s) 266, 318, 570, 643, 913, 916, 1144, 1183
Bme1390I CCNGG 3 cut(s) 18, 763, 1113
Bme18I GGWCC 2 cut(s) 891, 983
BmgT120I GGNCC 2 cut(s) 891, 983
BmiI GGNNCC 5 cut(s) 376, 810, 903, 1098, 1233
BmrFI CCNGG 3 cut(s) 18, 763, 1113
BmsI GCATC 1 cut(s) 87
BpmI CTGGAG 1 cut(s) 795
BpuEI CTTGAG 1 cut(s) 990
BpuMI CCSGG 1 cut(s) 763
BsaAI YACGTR 1 cut(s) 450
BsaJI CCNNGG 2 cut(s) 762, 1111
BsaWI WCCGGW 2 cut(s) 53, 469
BsaXI ACNNNNNCTCC 2 cut(s) 193, 223
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 818
Bse1I ACTGG 1 cut(s) 93
Bse3DI GCAATG 3 cut(s) 36, 581, 882
BseBI CCWGG 2 cut(s) 18, 1113
BseDI CCNNGG 2 cut(s) 762, 1111
BseGI GGATG 2 cut(s) 520, 679
BseLI CCNNNNNNNGG 2 cut(s) 107, 818
BseMI GCAATG 3 cut(s) 36, 581, 882
BseMII CTCAG 3 cut(s) 132, 572, 981
BseNI ACTGG 1 cut(s) 93
BseRI GAGGAG 2 cut(s) 839, 1056
BseSI GKGCMC 1 cut(s) 865
BseXI GCAGC 7 cut(s) 276, 580, 628, 898, 901, 1129, 1168
BseYI CCCAGC 1 cut(s) 79
Bsh1285I CGRYCG 1 cut(s) 72
BshFI GGCC 2 cut(s) 681, 846
BshNI GGYRCC 2 cut(s) 901, 1096
BsiEI CGRYCG 1 cut(s) 72
BsiHKAI GWGCWC 3 cut(s) 35, 559, 865
BsiSI CCGG 3 cut(s) 54, 470, 762
BslI CCNNNNNNNGG 2 cut(s) 107, 818
BsmAI GTCTC 2 cut(s) 400, 1127
BsmBI CGTCTC 1 cut(s) 400
BsnI GGCC 2 cut(s) 681, 846
Bsp1286I GDGCHC 4 cut(s) 35, 559, 865, 1236
Bsp143I GATC 4 cut(s) 69, 159, 522, 733
BspACI CCGC 5 cut(s) 316, 372, 434, 498, 671
BspANI GGCC 2 cut(s) 681, 846
BspCNI CTCAG 3 cut(s) 131, 571, 982
BspLI GGNNCC 5 cut(s) 376, 810, 903, 1098, 1233
BspPI GGATC 2 cut(s) 154, 741
BspT107I GGYRCC 2 cut(s) 901, 1096
BspTI CTTAAG 1 cut(s) 592
BsrBI CCGCTC 1 cut(s) 500
BsrDI GCAATG 3 cut(s) 36, 581, 882
BsrI ACTGG 1 cut(s) 93
BssECI CCNNGG 2 cut(s) 762, 1111
BssMI GATC 4 cut(s) 69, 159, 522, 733
Bst2UI CCWGG 2 cut(s) 18, 1113
Bst4CI ACNGT 4 cut(s) 427, 510, 778, 1211
Bst6I CTCTTC 1 cut(s) 16
BstAFI CTTAAG 1 cut(s) 592
BstAPI GCANNNNNTGC 1 cut(s) 650
BstBAI YACGTR 1 cut(s) 450
BstC8I GCNNGC 6 cut(s) 321, 573, 639, 772, 807, 956
BstDEI CTNAG 3 cut(s) 118, 558, 990
BstEII GGTNACC 1 cut(s) 110
BstF5I GGATG 2 cut(s) 520, 679
BstHHI GCGC 1 cut(s) 715
BstKTI GATC 4 cut(s) 72, 162, 525, 736
BstMAI GTCTC 2 cut(s) 400, 1127
BstMBI GATC 4 cut(s) 69, 159, 522, 733
BstMCI CGRYCG 1 cut(s) 72
BstMWI GCNNNNNNNGC 8 cut(s) 151, 273, 293, 440, 650, 960, 1020, 1151
BstNI CCWGG 2 cut(s) 18, 1113
BstNSI RCATGY 1 cut(s) 958
BstPI GGTNACC 1 cut(s) 110
BstSCI CCNGG 3 cut(s) 16, 761, 1111
BstSLI GKGCMC 1 cut(s) 865
BstSNI TACGTA 1 cut(s) 450
BstV1I GCAGC 7 cut(s) 276, 580, 628, 898, 901, 1129, 1168
BsuRI GGCC 2 cut(s) 681, 846
BtgZI GCGATG 1 cut(s) 1160
BtsCI GGATG 2 cut(s) 520, 679
BtsI GCAGTG 1 cut(s) 149
BtsIMutI CAGTG 5 cut(s) 86, 149, 278, 774, 1216
Cac8I GCNNGC 6 cut(s) 321, 573, 639, 772, 807, 956
CaiI CAGNNNCTG 1 cut(s) 776
CfoI GCGC 1 cut(s) 715
Cfr13I GGNCC 2 cut(s) 891, 983
Csp6I GTAC 3 cut(s) 193, 451, 700
CviAII CATG 6 cut(s) 250, 454, 686, 919, 951, 955
CviQI GTAC 3 cut(s) 193, 451, 700
DdeI CTNAG 3 cut(s) 118, 558, 990
DpnI GATC 4 cut(s) 71, 161, 524, 735
DpnII GATC 4 cut(s) 69, 159, 522, 733
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Eco105I TACGTA 1 cut(s) 450
Eco147I AGGCCT 1 cut(s) 846
Eco24I GRGCYC 1 cut(s) 1236
Eco47I GGWCC 2 cut(s) 891, 983
Eco91I GGTNACC 1 cut(s) 110
EcoO65I GGTNACC 1 cut(s) 110
EcoRII CCWGG 2 cut(s) 16, 1111
EcoT22I ATGCAT 1 cut(s) 956
EcoT38I GRGCYC 1 cut(s) 1236
Esp3I CGTCTC 1 cut(s) 400
FaeI CATG 6 cut(s) 253, 457, 689, 922, 954, 958
FalI AAGNNNNNCTT 4 cut(s) 129, 161, 197, 229
FatI CATG 6 cut(s) 249, 453, 685, 918, 950, 954
FauNDI CATATG 3 cut(s) 867, 907, 1025
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 8 cut(s) 265, 317, 569, 642, 912, 915, 1143, 1182
FokI GGATG 2 cut(s) 527, 686
FriOI GRGCYC 1 cut(s) 1236
Fsp4HI GCNGC 8 cut(s) 265, 317, 569, 642, 912, 915, 1143, 1182
FspBI CTAG 2 cut(s) 668, 1237
GlaI GCGC 1 cut(s) 714
GluI GCNGC 8 cut(s) 265, 317, 569, 642, 912, 915, 1143, 1182
GsaI CCCAGC 1 cut(s) 83
GsuI CTGGAG 1 cut(s) 795
HaeIII GGCC 2 cut(s) 681, 846
HapII CCGG 3 cut(s) 54, 470, 762
HhaI GCGC 1 cut(s) 715
Hin1II CATG 6 cut(s) 253, 457, 689, 922, 954, 958
Hin6I GCGC 1 cut(s) 713
HinP1I GCGC 1 cut(s) 713
HindIII AAGCTT 1 cut(s) 138
HinfI GANTC 3 cut(s) 336, 473, 536
HpaII CCGG 3 cut(s) 54, 470, 762
HphI GGTGA 2 cut(s) 43, 103
Hpy166II GTNNAC 3 cut(s) 223, 863, 1031
Hpy188I TCNGA 7 cut(s) 121, 335, 514, 561, 991, 1053, 1090
Hpy8I GTNNAC 3 cut(s) 223, 863, 1031
Hpy99I CGWCG 2 cut(s) 331, 631
HpyAV CCTTC 7 cut(s) 254, 305, 597, 692, 904, 994, 1197
HpyCH4III ACNGT 4 cut(s) 427, 510, 778, 1211
HpyCH4IV ACGT 4 cut(s) 219, 329, 449, 629
HpyCH4V TGCA 8 cut(s) 362, 568, 644, 863, 954, 1014, 1037, 1221
HpyF10VI GCNNNNNNNGC 8 cut(s) 151, 273, 293, 440, 650, 960, 1020, 1151
HpyF3I CTNAG 3 cut(s) 118, 558, 990
HpySE526I ACGT 4 cut(s) 219, 329, 449, 629
Hsp92II CATG 6 cut(s) 253, 457, 689, 922, 954, 958
HspAI GCGC 1 cut(s) 713
Kzo9I GATC 4 cut(s) 69, 159, 522, 733
LmnI GCTCC 5 cut(s) 38, 505, 814, 1189, 1231
Lsp1109I GCAGC 7 cut(s) 276, 580, 628, 898, 901, 1129, 1168
LweI GCATC 1 cut(s) 87
MaeI CTAG 2 cut(s) 668, 1237
MaeII ACGT 4 cut(s) 219, 329, 449, 629
MaeIII GTNAC 3 cut(s) 110, 445, 504
MalI GATC 4 cut(s) 71, 161, 524, 735
MbiI CCGCTC 1 cut(s) 500
MboI GATC 4 cut(s) 69, 159, 522, 733
MboII GAAGA 2 cut(s) 33, 205
MfeI CAATTG 2 cut(s) 645, 1216
MhlI GDGCHC 4 cut(s) 35, 559, 865, 1236
MluCI AATT 6 cut(s) 168, 528, 547, 645, 1105, 1216
MlyI GAGTC 1 cut(s) 345
MmeI TCCRAC 3 cut(s) 492, 501, 1114
Mph1103I ATGCAT 1 cut(s) 956
MseI TTAA 3 cut(s) 531, 593, 1104
MslI CAYNNNNRTG 1 cut(s) 949
MspA1I CMGCKG 2 cut(s) 542, 787
MspCI CTTAAG 1 cut(s) 592
MspI CCGG 3 cut(s) 54, 470, 762
MspR9I CCNGG 3 cut(s) 18, 763, 1113
MunI CAATTG 2 cut(s) 645, 1216
MvaI CCWGG 2 cut(s) 18, 1113
MwoI GCNNNNNNNGC 8 cut(s) 151, 273, 293, 440, 650, 960, 1020, 1151
NciI CCSGG 1 cut(s) 763
NdeI CATATG 3 cut(s) 867, 907, 1025
NdeII GATC 4 cut(s) 69, 159, 522, 733
NlaIII CATG 6 cut(s) 253, 457, 689, 922, 954, 958
NlaIV GGNNCC 5 cut(s) 376, 810, 903, 1098, 1233
NsiI ATGCAT 1 cut(s) 956
NspI RCATGY 1 cut(s) 958
PaeI GCATGC 1 cut(s) 958
PceI AGGCCT 1 cut(s) 846
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PfeI GAWTC 2 cut(s) 473, 536
PfoI TCCNGGA 1 cut(s) 16
PkrI GCNGC 8 cut(s) 266, 318, 570, 643, 913, 916, 1144, 1183
Ple19I CGATCG 1 cut(s) 72
PleI GAGTC 1 cut(s) 344
PpsI GAGTC 1 cut(s) 344
Ppu21I YACGTR 1 cut(s) 450
Psp6I CCWGG 2 cut(s) 16, 1111
PspEI GGTNACC 1 cut(s) 110
PspFI CCCAGC 1 cut(s) 79
PspGI CCWGG 2 cut(s) 16, 1111
PspN4I GGNNCC 5 cut(s) 376, 810, 903, 1098, 1233
PspPI GGNCC 2 cut(s) 891, 983
PstNI CAGNNNCTG 1 cut(s) 776
PvuI CGATCG 1 cut(s) 72
PvuII CAGCTG 2 cut(s) 542, 787
RsaI GTAC 3 cut(s) 194, 452, 701
RsaNI GTAC 3 cut(s) 193, 451, 700
RseI CAYNNNNRTG 1 cut(s) 949
SaqAI TTAA 3 cut(s) 531, 593, 1104
SatI GCNGC 8 cut(s) 265, 317, 569, 642, 912, 915, 1143, 1182
Sau3AI GATC 4 cut(s) 69, 159, 522, 733
Sau96I GGNCC 2 cut(s) 891, 983
SchI GAGTC 1 cut(s) 345
ScrFI CCNGG 3 cut(s) 18, 763, 1113
SduI GDGCHC 4 cut(s) 35, 559, 865, 1236
SfaNI GCATC 1 cut(s) 87
SinI GGWCC 2 cut(s) 891, 983
SmiMI CAYNNNNRTG 1 cut(s) 949
SmlI CTYRAG 2 cut(s) 592, 1005
SmoI CTYRAG 2 cut(s) 592, 1005
SnaBI TACGTA 1 cut(s) 450
SphI GCATGC 1 cut(s) 958
Sse9I AATT 6 cut(s) 168, 528, 547, 645, 1105, 1216
SseBI AGGCCT 1 cut(s) 846
SsiI CCGC 5 cut(s) 316, 372, 434, 498, 671
SspMI CTAG 2 cut(s) 668, 1237
StuI AGGCCT 1 cut(s) 846
StyD4I CCNGG 3 cut(s) 16, 761, 1111
TaaI ACNGT 4 cut(s) 427, 510, 778, 1211
TaiI ACGT 4 cut(s) 222, 332, 452, 632
TaqI TCGA 4 cut(s) 326, 839, 971, 1196
TasI AATT 6 cut(s) 168, 528, 547, 645, 1105, 1216
TatI WGTACW 1 cut(s) 699
TauI GCSGC 1 cut(s) 319
TfiI GAWTC 2 cut(s) 473, 536
Tru1I TTAA 3 cut(s) 531, 593, 1104
Tru9I TTAA 3 cut(s) 531, 593, 1104
TscAI CASTG 5 cut(s) 93, 156, 278, 781, 1216
TseI GCWGC 7 cut(s) 264, 568, 641, 911, 914, 1142, 1181
TspDTI ATGAA 3 cut(s) 531, 674, 710
TspGWI ACGGA 2 cut(s) 492, 975
TspRI CASTG 5 cut(s) 93, 156, 278, 781, 1216
Vha464I CTTAAG 1 cut(s) 592
VneI GTGCAC 1 cut(s) 861
VpaK11BI GGWCC 2 cut(s) 891, 983
XapI RAATTY 1 cut(s) 547
XceI RCATGY 1 cut(s) 958
XcmI CCANNNNNNNNNTGG 1 cut(s) 1208
XmiI GTMKAC 1 cut(s) 222
XspI CTAG 2 cut(s) 668, 1237
Zsp2I ATGCAT 1 cut(s) 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.