Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013236

Physical Location & Seq

Genomic Coordinates Reverse (-)

17150238 .. 17151681

Gene Structure 1444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G42765.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCTCGTCTTATCCCAATTTCTCAACCTTTCTTCTCTTCAAACACTAAACCTCCACCACCACCACCAATCGCCGCCGCACAAATCTCCGACCACCTGCCACAGATTATCTCTCGCCGAGACGCCACCGTTCTTCTCTCCTCCGCCACTTCTCTTCTCCTCACTCTCTCCCCCACCAATCCCGCTTTCGCCTTCTCCTTAGGAATCTCAGGACCTAAAGAGTGGCTTAAAGATCAGAAGAAGAAGTCTTCAAGATTCTTACTTGCTCCCATTGATGCAACTCGTCAAGCTCTTCAATCTGCTTATCTTTCGTTAACTAGTGAATCTGATTATACAGAGAAAGATTTGGAGAATCTGCAGAATCTGTTTAAGTCTTCTGCAAGAGATTGTGTTCCTAAAGAAAGAAGCTCTCTTGTTGATTTTCAATCTAAATCCGGAGTTGAGGTTTGTACATTTAAGCTTGTTGTGAAGAATGCTGCTTCATTACTTGATGATAAGGATCCAGTTAAATTAGAAGCAGAGAATATACTTGATGATCTTGTTAGGTCTTTCGGTTCCCTTATCGTGTTGACGAATGGGGTTGATATGAATCTTCCTTCTGATAGAAAAAAAGTTGCAGATGGGGTTACAGAGACTATCTCTTATCTTGACAAATTTGAGAAGGGTGTCAAAGACTGTCTTGAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

25.1

Weight (kDa)

5.95

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42765
fragaria_vesca	FvH4_2g39780
malus_domestica	MD08G1031600.v1.1 MD15G1027300.v1.1
prunus_persica	Prupe.1G379100_v2.0.a1 Prupe.1G379100_v2.0.a1
pyrus_communis	pycom08g02490 pycom15g02330
rosa_chinensis	RchiOBHm_Chr6g0301081
rosa_multiflora	Rmu_sc0003168.1_g000013 Rmu_sc0035551.1_g000004
rosa_roxburghii	Rroxscaffold_172G00445580 Rroxscaffold_7G00167200
rosa_rugosa	Rorug06G0300600
rosa_samantha	Rh6AG414500 Rh6BG421400 Rh6CG429100 Rh6DG414400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	105
Acc36I	ACCTGC	1 cut(s)	105
AccIII	TCCGGA	1 cut(s)	434
AciI	CCGC	4 cut(s)	75, 78, 144, 183
AclWI	GGATC	2 cut(s)	494, 507
AcsI	RAATTY	1 cut(s)	653
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	451
AgsI	TTSAA	4 cut(s)	42, 252, 296, 425
AhlI	ACTAGT	1 cut(s)	317
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	3 cut(s)	290, 408, 460
AluI	AGCT	3 cut(s)	290, 408, 460
Alw26I	GTCTC	2 cut(s)	114, 626
AlwI	GGATC	2 cut(s)	494, 507
AlwNI	CAGNNNCTG	1 cut(s)	364
Aor13HI	TCCGGA	1 cut(s)	434
ApeKI	GCWGC	1 cut(s)	476
ApoI	RAATTY	1 cut(s)	653
AspS9I	GGNCC	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	212
AxyI	CCTNAGG	1 cut(s)	199
BamHI	GGATCC	1 cut(s)	499
BbsI	GAAGAC	2 cut(s)	240, 366
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	1 cut(s)	614
BcoDI	GTCTC	2 cut(s)	114, 626
BcuI	ACTAGT	1 cut(s)	317
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	356
BfuAI	ACCTGC	1 cut(s)	105
BisI	GCNGC	3 cut(s)	75, 78, 477
BlsI	GCNGC	3 cut(s)	76, 79, 478
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	2 cut(s)	501, 556
BmsI	GCATC	1 cut(s)	265
BpiI	GAAGAC	2 cut(s)	240, 366
BplI	GAGNNNNNCTC	2 cut(s)	623, 655
BsaBI	GATNNNNATC	2 cut(s)	498, 588
BsaHI	GRCGYC	1 cut(s)	123
BsaWI	WCCGGW	1 cut(s)	434
BsaXI	ACNNNNNCTCC	4 cut(s)	37, 67, 429, 459
Bse1I	ACTGG	1 cut(s)	503
Bse21I	CCTNAGG	1 cut(s)	199
Bse8I	GATNNNNATC	2 cut(s)	498, 588
BseAI	TCCGGA	1 cut(s)	434
BseJI	GATNNNNATC	2 cut(s)	498, 588
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	503
BseRI	GAGGAG	2 cut(s)	130, 149
BseXI	GCAGC	1 cut(s)	463
BsiSI	CCGG	1 cut(s)	435
BsmAI	GTCTC	2 cut(s)	114, 626
BsmBI	CGTCTC	1 cut(s)	114
BsmI	GAATGC	1 cut(s)	478
Bsp13I	TCCGGA	1 cut(s)	434
Bsp1407I	TGTACA	1 cut(s)	449
Bsp143I	GATC	3 cut(s)	232, 499, 535
BspACI	CCGC	4 cut(s)	75, 78, 144, 183
BspCNI	CTCAG	1 cut(s)	221
BspEI	TCCGGA	1 cut(s)	434
BspLI	GGNNCC	2 cut(s)	501, 556
BspMAI	CTGCAG	1 cut(s)	360
BspMI	ACCTGC	1 cut(s)	105
BspPI	GGATC	2 cut(s)	494, 507
BspQI	GCTCTTC	1 cut(s)	297
BsrGI	TGTACA	1 cut(s)	449
BsrI	ACTGG	1 cut(s)	503
BssMI	GATC	3 cut(s)	232, 499, 535
BssNI	GRCGYC	1 cut(s)	123
Bst4CI	ACNGT	2 cut(s)	130, 677
Bst6I	CTCTTC	3 cut(s)	43, 159, 297
BstACI	GRCGYC	1 cut(s)	123
BstAUI	TGTACA	1 cut(s)	449
BstDEI	CTNAG	2 cut(s)	199, 208
BstKTI	GATC	3 cut(s)	235, 502, 538
BstMAI	GTCTC	2 cut(s)	114, 626
BstMBI	GATC	3 cut(s)	232, 499, 535
BstSFI	CTRYAG	1 cut(s)	356
BstV1I	GCAGC	1 cut(s)	463
BstV2I	GAAGAC	2 cut(s)	240, 366
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
Bsu36I	CCTNAGG	1 cut(s)	199
BveI	ACCTGC	1 cut(s)	105
CaiI	CAGNNNCTG	1 cut(s)	364
Cfr13I	GGNCC	1 cut(s)	212
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	450
CviJI	RGCY	5 cut(s)	5, 226, 290, 408, 460
CviKI_1	RGCY	5 cut(s)	5, 226, 290, 408, 460
CviQI	GTAC	1 cut(s)	450
DdeI	CTNAG	2 cut(s)	199, 208
DpnI	GATC	3 cut(s)	234, 501, 537
DpnII	GATC	3 cut(s)	232, 499, 535
Eam1104I	CTCTTC	3 cut(s)	43, 159, 297
EarI	CTCTTC	3 cut(s)	43, 159, 297
EciI	GGCGGA	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	212
Eco81I	CCTNAGG	1 cut(s)	199
EcoO109I	RGGNCCY	1 cut(s)	212
Esp3I	CGTCTC	1 cut(s)	114
FaiI	YATR	3 cut(s)	333, 527, 587
FalI	AAGNNNNNCTT	3 cut(s)	210, 242, 663
FauI	CCCGC	1 cut(s)	190
Fnu4HI	GCNGC	3 cut(s)	75, 78, 477
Fsp4HI	GCNGC	3 cut(s)	75, 78, 477
FspBI	CTAG	1 cut(s)	318
GluI	GCNGC	3 cut(s)	75, 78, 477
HapII	CCGG	1 cut(s)	435
HgaI	GACGC	1 cut(s)	131
Hin1I	GRCGYC	1 cut(s)	123
HincII	GTYRAC	2 cut(s)	315, 570
HindII	GTYRAC	2 cut(s)	315, 570
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	6 cut(s)	204, 255, 323, 352, 361, 589
HpaI	GTTAAC	1 cut(s)	315
HpaII	CCGG	1 cut(s)	435
Hpy166II	GTNNAC	2 cut(s)	315, 570
Hpy188I	TCNGA	4 cut(s)	91, 237, 328, 601
Hpy188III	TCNNGA	5 cut(s)	210, 252, 435, 647, 680
Hpy8I	GTNNAC	2 cut(s)	315, 570
HpyAV	CCTTC	3 cut(s)	202, 606, 655
HpyCH4III	ACNGT	2 cut(s)	130, 677
HpyCH4V	TGCA	4 cut(s)	278, 358, 380, 617
HpyF3I	CTNAG	2 cut(s)	199, 208
Hsp92I	GRCGYC	1 cut(s)	123
Kpn2I	TCCGGA	1 cut(s)	434
KspAI	GTTAAC	1 cut(s)	315
Kzo9I	GATC	3 cut(s)	232, 499, 535
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	4 cut(s)	110, 195, 448, 516
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	625
MalI	GATC	3 cut(s)	234, 501, 537
MboI	GATC	3 cut(s)	232, 499, 535
MflI	RGATCY	1 cut(s)	499
MluCI	AATT	3 cut(s)	18, 509, 653
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	4 cut(s)	63, 151, 170, 436
MroI	TCCGGA	1 cut(s)	434
MseI	TTAA	5 cut(s)	228, 314, 369, 456, 507
MspI	CCGG	1 cut(s)	435
Mva1269I	GAATGC	1 cut(s)	478
NdeII	GATC	3 cut(s)	232, 499, 535
NlaIV	GGNNCC	2 cut(s)	501, 556
NmeAIII	GCCGAG	1 cut(s)	143
PaqCI	CACCTGC	1 cut(s)	105
PciSI	GCTCTTC	1 cut(s)	297
PctI	GAATGC	1 cut(s)	478
PfeI	GAWTC	6 cut(s)	204, 255, 323, 352, 361, 589
PkrI	GCNGC	3 cut(s)	76, 79, 478
PpuMI	RGGWCCY	1 cut(s)	212
Psp5II	RGGWCCY	1 cut(s)	212
PspN4I	GGNNCC	2 cut(s)	501, 556
PspPI	GGNCC	1 cut(s)	212
PspPPI	RGGWCCY	1 cut(s)	212
PstI	CTGCAG	1 cut(s)	360
PstNI	CAGNNNCTG	1 cut(s)	364
PsuI	RGATCY	1 cut(s)	499
RsaI	GTAC	1 cut(s)	451
RsaNI	GTAC	1 cut(s)	450
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	5 cut(s)	228, 314, 369, 456, 507
SatI	GCNGC	3 cut(s)	75, 78, 477
Sau3AI	GATC	3 cut(s)	232, 499, 535
Sau96I	GGNCC	1 cut(s)	212
SetI	ASST	9 cut(s)	31, 55, 99, 217, 292, 410, 447, 462, 548
SfaNI	GCATC	1 cut(s)	265
SfcI	CTRYAG	1 cut(s)	356
SinI	GGWCC	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
SpeI	ACTAGT	1 cut(s)	317
Sse9I	AATT	3 cut(s)	18, 509, 653
SsiI	CCGC	4 cut(s)	75, 78, 144, 183
SspMI	CTAG	1 cut(s)	318
TaaI	ACNGT	2 cut(s)	130, 677
TasI	AATT	3 cut(s)	18, 509, 653
TatI	WGTACW	1 cut(s)	449
TauI	GCSGC	2 cut(s)	77, 80
TfiI	GAWTC	6 cut(s)	204, 255, 323, 352, 361, 589
Tru1I	TTAA	5 cut(s)	228, 314, 369, 456, 507
Tru9I	TTAA	5 cut(s)	228, 314, 369, 456, 507
TseI	GCWGC	1 cut(s)	476
TspDTI	ATGAA	2 cut(s)	471, 602
VpaK11BI	GGWCC	1 cut(s)	212
XapI	RAATTY	1 cut(s)	653
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.