Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0013236

Physical Location & Seq

Genomic Coordinates Forward (+)

28475382 .. 28476905

Gene Structure 1524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g39780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCTTCCGCTTGTTGCCGCCTTATCTCAACTACCACCTCAGCCACTGTAACCGCCATTTCCTCCTTCCCTCCAAAACCAGAACCCCCAATTTCAAATCACCACCGGCTCCCAAATCTCACTCGCAGAGACCTCGCTCTCCTCTCCTTCATCGCCCTAGTCCCCCCCCTCTCTCGACCCGACCCGGCTTTCGCATTCGGCATTTCAGGACCAAAGGATTGGCTCCGAGAGCAAAAGAAGAAGGCCTCCAGGTTCCTCTTGGCCCCAATCGATGCTTCTAGAGAGAGCCTCCTCGCCGCTCATCGATTACTCATGGATGATACGAATCAGGAGATAGAGGAGGTTCAGAGACTGTTCAGATCTGCCGCCAGGGATTGCGTCGTGGAAGACCGGAGTTCTTTCGTTGCGTTTCAAGCCAATACCGGTGTTGAGGTTTGCACATTCCGTCTGCTTGTAAGAAATGCAGCATCATTGCTCGGTGATAAGGATCCTGTAAAATTGGAAGCGGAATCTATGCTCAACGATCTTATAAGATCATTCAGTTCTCTTAATGTATTGGTAAATGAGAGTGATGCTCTACTTGCCTCGCAAAGAAAGAAGGTAGCAGATTCACTCATGGATACCATATCATCCCTTGACAAATTTGAGCAGGGAATCAAGGATTGCCTTGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

24.8

Weight (kDa)

6.33

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42765
fragaria_vesca	FvH4_2g39780
malus_domestica	MD08G1031600.v1.1 MD15G1027300.v1.1
prunus_persica	Prupe.1G379100_v2.0.a1 Prupe.1G379100_v2.0.a1
pyrus_communis	pycom08g02490 pycom15g02330
rosa_chinensis	RchiOBHm_Chr6g0301081
rosa_multiflora	Rmu_sc0003168.1_g000013 Rmu_sc0035551.1_g000004
rosa_roxburghii	Rroxscaffold_172G00445580 Rroxscaffold_7G00167200
rosa_rugosa	Rorug06G0300600
rosa_samantha	Rh6AG414500 Rh6BG421400 Rh6CG429100 Rh6DG414400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	530
AccBSI	CCGCTC	1 cut(s)	299
AciI	CCGC	6 cut(s)	9, 19, 54, 297, 366, 506
AclWI	GGATC	2 cut(s)	482, 495
AcsI	RAATTY	1 cut(s)	641
AgeI	ACCGGT	1 cut(s)	422
AgsI	TTSAA	3 cut(s)	96, 413, 671
AjnI	CCWGG	2 cut(s)	248, 368
AjuI	GAANNNNNNNTTGG	2 cut(s)	259, 291
AluBI	AGCT	1 cut(s)	674
AluI	AGCT	1 cut(s)	674
Alw26I	GTCTC	2 cut(s)	123, 343
AlwI	GGATC	2 cut(s)	482, 495
AlwNI	CAGNNNCTG	2 cut(s)	47, 352
AoxI	GGCC	2 cut(s)	243, 261
ApeKI	GCWGC	1 cut(s)	464
ApoI	RAATTY	1 cut(s)	641
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AsiGI	ACCGGT	1 cut(s)	422
AspS9I	GGNCC	2 cut(s)	209, 262
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	92, 491
AvaII	GGWCC	1 cut(s)	209
BamHI	GGATCC	1 cut(s)	487
BbsI	GAAGAC	1 cut(s)	393
BbvCI	CCTCAGC	1 cut(s)	40
BbvI	GCAGC	1 cut(s)	476
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BciT130I	CCWGG	2 cut(s)	250, 370
BciVI	GTATCC	1 cut(s)	613
BcnI	CCSGG	1 cut(s)	185
BcoDI	GTCTC	2 cut(s)	123, 343
BfaI	CTAG	2 cut(s)	158, 279
BfuI	GTATCC	1 cut(s)	613
BglII	AGATCT	1 cut(s)	359
BisI	GCNGC	4 cut(s)	19, 297, 366, 465
BlsI	GCNGC	4 cut(s)	20, 298, 367, 466
Bme1390I	CCNGG	3 cut(s)	185, 250, 370
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	2 cut(s)	209, 262
BmiI	GGNNCC	5 cut(s)	110, 224, 254, 264, 489
BmrFI	CCNGG	3 cut(s)	185, 250, 370
BmsI	GCATC	3 cut(s)	262, 476, 562
BpiI	GAAGAC	1 cut(s)	393
BplI	GAGNNNNNCTC	4 cut(s)	273, 305, 559, 591
BpmI	CTGGAG	1 cut(s)	232
Bpu10I	CCTNAGC	1 cut(s)	40
BpuMI	CCSGG	1 cut(s)	185
Bsa29I	ATCGAT	2 cut(s)	270, 304
BsaBI	GATNNNNATC	2 cut(s)	324, 486
BsaI	GGTCTC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	369
BsaWI	WCCGGW	2 cut(s)	390, 422
Bse118I	RCCGGY	2 cut(s)	105, 422
Bse3DI	GCAATG	1 cut(s)	470
Bse8I	GATNNNNATC	2 cut(s)	324, 486
BseBI	CCWGG	2 cut(s)	250, 370
BseCI	ATCGAT	2 cut(s)	270, 304
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	2 cut(s)	322, 629
BseJI	GATNNNNATC	2 cut(s)	324, 486
BseMI	GCAATG	1 cut(s)	470
BseMII	CTCAG	1 cut(s)	54
BseRI	GAGGAG	3 cut(s)	131, 281, 353
BseXI	GCAGC	1 cut(s)	476
BshFI	GGCC	2 cut(s)	245, 263
BshTI	ACCGGT	1 cut(s)	422
BshVI	ATCGAT	2 cut(s)	270, 304
BsiSI	CCGG	4 cut(s)	106, 185, 391, 423
BslFI	GGGAC	1 cut(s)	146
BsmAI	GTCTC	2 cut(s)	123, 343
BsmFI	GGGAC	1 cut(s)	146
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	245, 263
Bso31I	GGTCTC	1 cut(s)	123
Bsp143I	GATC	4 cut(s)	359, 487, 523, 533
BspACI	CCGC	6 cut(s)	9, 19, 54, 297, 366, 506
BspANI	GGCC	2 cut(s)	245, 263
BspCNI	CTCAG	1 cut(s)	53
BspDI	ATCGAT	2 cut(s)	270, 304
BspLI	GGNNCC	5 cut(s)	110, 224, 254, 264, 489
BspPI	GGATC	2 cut(s)	482, 495
BspTNI	GGTCTC	1 cut(s)	123
BsrBI	CCGCTC	1 cut(s)	299
BsrDI	GCAATG	1 cut(s)	470
BsrFI	RCCGGY	2 cut(s)	105, 422
BssAI	RCCGGY	2 cut(s)	105, 422
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	4 cut(s)	359, 487, 523, 533
Bst2UI	CCWGG	2 cut(s)	250, 370
Bst4CI	ACNGT	2 cut(s)	49, 354
BstDEI	CTNAG	1 cut(s)	40
BstF5I	GGATG	2 cut(s)	322, 629
BstKTI	GATC	4 cut(s)	362, 490, 526, 536
BstMAI	GTCTC	2 cut(s)	123, 343
BstMBI	GATC	4 cut(s)	359, 487, 523, 533
BstMWI	GCNNNNNNNGC	3 cut(s)	229, 413, 581
BstNI	CCWGG	2 cut(s)	250, 370
BstSCI	CCNGG	3 cut(s)	183, 248, 368
BstV1I	GCAGC	1 cut(s)	476
BstV2I	GAAGAC	1 cut(s)	393
BstX2I	RGATCY	2 cut(s)	359, 487
BstXI	CCANNNNNNTGG	1 cut(s)	219
BstYI	RGATCY	2 cut(s)	359, 487
Bsu15I	ATCGAT	2 cut(s)	270, 304
BsuI	GTATCC	1 cut(s)	613
BsuRI	GGCC	2 cut(s)	245, 263
BsuTUI	ATCGAT	2 cut(s)	270, 304
BtgZI	GCGATG	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	322, 629
BtsIMutI	CAGTG	1 cut(s)	45
CaiI	CAGNNNCTG	2 cut(s)	47, 352
Cfr10I	RCCGGY	2 cut(s)	105, 422
Cfr13I	GGNCC	2 cut(s)	209, 262
ClaI	ATCGAT	2 cut(s)	270, 304
CseI	GACGC	1 cut(s)	367
CspAI	ACCGGT	1 cut(s)	422
CviAII	CATG	2 cut(s)	313, 616
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	4 cut(s)	361, 489, 525, 535
DpnII	GATC	4 cut(s)	359, 487, 523, 533
Eco147I	AGGCCT	1 cut(s)	245
Eco31I	GGTCTC	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	209
EcoRII	CCWGG	2 cut(s)	248, 368
FaeI	CATG	2 cut(s)	316, 619
FaiI	YATR	5 cut(s)	314, 515, 530, 617, 626
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	2 cut(s)	312, 615
Fnu4HI	GCNGC	4 cut(s)	19, 297, 366, 465
FokI	GGATG	2 cut(s)	329, 616
Fsp4HI	GCNGC	4 cut(s)	19, 297, 366, 465
FspBI	CTAG	2 cut(s)	158, 279
GluI	GCNGC	4 cut(s)	19, 297, 366, 465
GsuI	CTGGAG	1 cut(s)	232
HaeIII	GGCC	2 cut(s)	245, 263
HapII	CCGG	4 cut(s)	106, 185, 391, 423
HgaI	GACGC	1 cut(s)	367
Hin1II	CATG	2 cut(s)	316, 619
HindIII	AAGCTT	1 cut(s)	672
HinfI	GANTC	4 cut(s)	325, 509, 608, 654
HpaII	CCGG	4 cut(s)	106, 185, 391, 423
HphI	GGTGA	2 cut(s)	92, 491
Hpy188I	TCNGA	3 cut(s)	227, 348, 359
Hpy188III	TCNNGA	4 cut(s)	174, 207, 279, 329
Hpy99I	CGWCG	1 cut(s)	383
HpyAV	CCTTC	4 cut(s)	76, 157, 235, 592
HpyCH4III	ACNGT	2 cut(s)	49, 354
HpyCH4V	TGCA	2 cut(s)	438, 464
HpyF10VI	GCNNNNNNNGC	3 cut(s)	229, 413, 581
HpyF3I	CTNAG	1 cut(s)	40
Hsp92II	CATG	2 cut(s)	316, 619
Kzo9I	GATC	4 cut(s)	359, 487, 523, 533
LmnI	GCTCC	2 cut(s)	114, 228
Lsp1109I	GCAGC	1 cut(s)	476
LweI	GCATC	3 cut(s)	262, 476, 562
MaeI	CTAG	2 cut(s)	158, 279
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	4 cut(s)	361, 489, 525, 535
MbiI	CCGCTC	1 cut(s)	299
MboI	GATC	4 cut(s)	359, 487, 523, 533
MboII	GAAGA	2 cut(s)	250, 398
MflI	RGATCY	2 cut(s)	359, 487
MluCI	AATT	3 cut(s)	90, 497, 641
MseI	TTAA	1 cut(s)	549
MspI	CCGG	4 cut(s)	106, 185, 391, 423
MspR9I	CCNGG	3 cut(s)	185, 250, 370
Mva1269I	GAATGC	1 cut(s)	194
MvaI	CCWGG	2 cut(s)	250, 370
MwoI	GCNNNNNNNGC	3 cut(s)	229, 413, 581
NciI	CCSGG	1 cut(s)	185
NdeII	GATC	4 cut(s)	359, 487, 523, 533
NlaIII	CATG	2 cut(s)	316, 619
NlaIV	GGNNCC	5 cut(s)	110, 224, 254, 264, 489
PceI	AGGCCT	1 cut(s)	245
PctI	GAATGC	1 cut(s)	194
PfeI	GAWTC	4 cut(s)	325, 509, 608, 654
PinAI	ACCGGT	1 cut(s)	422
PkrI	GCNGC	4 cut(s)	20, 298, 367, 466
PsiI	TTATAA	1 cut(s)	530
Psp6I	CCWGG	2 cut(s)	248, 368
PspGI	CCWGG	2 cut(s)	248, 368
PspN4I	GGNNCC	5 cut(s)	110, 224, 254, 264, 489
PspPI	GGNCC	2 cut(s)	209, 262
PstNI	CAGNNNCTG	2 cut(s)	47, 352
PsuI	RGATCY	2 cut(s)	359, 487
SaqAI	TTAA	1 cut(s)	549
SatI	GCNGC	4 cut(s)	19, 297, 366, 465
Sau3AI	GATC	4 cut(s)	359, 487, 523, 533
Sau96I	GGNCC	2 cut(s)	209, 262
ScrFI	CCNGG	3 cut(s)	185, 250, 370
SetI	ASST	7 cut(s)	41, 135, 254, 345, 435, 603, 676
SfaNI	GCATC	3 cut(s)	262, 476, 562
SinI	GGWCC	1 cut(s)	209
Sse9I	AATT	3 cut(s)	90, 497, 641
SseBI	AGGCCT	1 cut(s)	245
SsiI	CCGC	6 cut(s)	9, 19, 54, 297, 366, 506
SspMI	CTAG	2 cut(s)	158, 279
StuI	AGGCCT	1 cut(s)	245
StyD4I	CCNGG	3 cut(s)	183, 248, 368
TaaI	ACNGT	2 cut(s)	49, 354
TaqI	TCGA	3 cut(s)	175, 270, 304
TasI	AATT	3 cut(s)	90, 497, 641
TauI	GCSGC	3 cut(s)	21, 299, 368
TfiI	GAWTC	4 cut(s)	325, 509, 608, 654
Tru1I	TTAA	1 cut(s)	549
Tru9I	TTAA	1 cut(s)	549
TscAI	CASTG	1 cut(s)	52
TseI	GCWGC	1 cut(s)	464
TspDTI	ATGAA	1 cut(s)	139
TspGWI	ACGGA	1 cut(s)	434
TspRI	CASTG	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	209
XapI	RAATTY	1 cut(s)	641
XbaI	TCTAGA	1 cut(s)	278
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256
XspI	CTAG	2 cut(s)	158, 279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.