pycom08g02490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0013236
Physical Location & Seq
Forward (+)
1835075 .. 1836579
1505 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g02490.5

Sequence Viewer

Length: 825 bp
ATGCAAAATCGCGTTCCACGTGACGAGGAATGCAAAACGTCAAGTCGTATATCGATGACTCACCCACACAACCACAACACGTCGTCGCAAAAGAAAAGCAGAAACGCAACAATAATGGCAGTTGCTTCGTGCCGCCTTATCTCCAGCTCGTCCTTATCCACTGTAACCGCCATTTCATCCTTCCCTCCAAAATTAAAAACCCTAATTTCAAATCCGCACGCTTCCCCCAATCTTCAGCTCCCAAAACGCAGTCGTAGAGACGTCGCTTTGCTCTCCCTCATCGCTCTCATCCCTTCGCTCGTCCGACCCGACCCGGCATCCGGACTTTCCTTTGGCATTTCAGGACCAAAGGATTGGCTCCGAGAGCAGAAGAAGAAGGCCTCCAGGTTCCTCCTGGCCCCGATTGATGCCTCCCGAGAGAGCCTCGTCGCGGCTCATCAATTACTCACGGCTACGGATTCGGATTATACGAACAAGGAGATGGAGGAGGTTCAGAGATTGTTTAGATCTGCTGCGAGGGATTGTGTTATAGAGGACAGGAACTCGTTTGTTGCATTTCAAGCCAATACGGGTGTTGAGGTTTGCACATTCCGTTTGGTTGTAAAGAACGCGTCGTCGTTGCTTGGTGATAAGGATCCCGTAAAATTGGAAGCCGAGTCTTTGCTAAATGATCTTATAAGATCATTCACTTCTCTTAATGGTCTGGTAAATGAGACTGATGTTCAATTTTCCGCTGAAAGAAAGAAGGTTGCAGATTCTCTCATGGATACCATATCATCCCTAGACAAATTTGAGCAGGGAATCAAGGACTGCCTTGAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

275

Amino Acids

30.2

Weight (kDa)

8.96

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 677
AatII GACGTC 1 cut(s) 264
AccII CGCG 3 cut(s) 12, 431, 611
AccIII TCCGGA 1 cut(s) 320
AciI CCGC 5 cut(s) 133, 168, 215, 431, 732
AclWI GGATC 2 cut(s) 629, 642
AcsI RAATTY 1 cut(s) 788
AcuI CTGAAG 1 cut(s) 218
AcvI CACGTG 1 cut(s) 20
AcyI GRCGYC 1 cut(s) 261
AfiI CCNNNNNNNGG 2 cut(s) 320, 430
AflIII ACRYGT 2 cut(s) 78, 609
AgsI TTSAA 4 cut(s) 210, 560, 725, 818
AjiI CACGTC 1 cut(s) 81
AjnI CCWGG 2 cut(s) 383, 393
AluBI AGCT 3 cut(s) 147, 238, 821
AluI AGCT 3 cut(s) 147, 238, 821
Alw26I GTCTC 2 cut(s) 252, 707
AlwI GGATC 2 cut(s) 629, 642
Ama87I CYCGRG 1 cut(s) 414
Aor13HI TCCGGA 1 cut(s) 320
AoxI GGCC 2 cut(s) 378, 396
ApeKI GCWGC 1 cut(s) 512
ApoI RAATTY 1 cut(s) 788
AspS9I GGNCC 2 cut(s) 344, 397
AsuC2I CCSGG 1 cut(s) 314
AsuHPI GGTGA 2 cut(s) 53, 638
AvaI CYCGRG 1 cut(s) 414
AvaII GGWCC 1 cut(s) 344
BamHI GGATCC 1 cut(s) 634
BbrPI CACGTG 1 cut(s) 20
BbvI GCAGC 1 cut(s) 499
BccI CCATC 1 cut(s) 475
BceAI ACGGC 1 cut(s) 465
BcgI CGANNNNNNTGC 2 cut(s) 108, 142
BciT130I CCWGG 2 cut(s) 385, 395
BciVI GTATCC 1 cut(s) 760
BcnI CCSGG 1 cut(s) 314
BcoDI GTCTC 2 cut(s) 252, 707
BfaI CTAG 1 cut(s) 782
BfuI GTATCC 1 cut(s) 760
BglII AGATCT 1 cut(s) 506
BisI GCNGC 3 cut(s) 133, 432, 513
BlsI GCNGC 3 cut(s) 134, 433, 514
Bme1390I CCNGG 3 cut(s) 314, 385, 395
Bme18I GGWCC 1 cut(s) 344
BmeT110I CYCGRG 1 cut(s) 414
BmgBI CACGTC 1 cut(s) 81
BmgT120I GGNCC 2 cut(s) 344, 397
BmiI GGNNCC 4 cut(s) 359, 389, 399, 636
BmrFI CCNGG 3 cut(s) 314, 385, 395
BmsI GCATC 2 cut(s) 326, 397
BplI GAGNNNNNCTC 2 cut(s) 408, 440
BpmI CTGGAG 2 cut(s) 127, 367
BpuMI CCSGG 1 cut(s) 314
Bsa29I ATCGAT 1 cut(s) 53
BsaAI YACGTR 1 cut(s) 20
BsaBI GATNNNNATC 1 cut(s) 633
BsaHI GRCGYC 1 cut(s) 261
BsaWI WCCGGW 1 cut(s) 320
Bsc4I CCNNNNNNNGG 2 cut(s) 320, 430
Bse8I GATNNNNATC 1 cut(s) 633
BseAI TCCGGA 1 cut(s) 320
BseBI CCWGG 2 cut(s) 385, 395
BseCI ATCGAT 1 cut(s) 53
BseGI GGATG 4 cut(s) 176, 288, 317, 776
BseJI GATNNNNATC 1 cut(s) 633
BseLI CCNNNNNNNGG 2 cut(s) 320, 430
BseRI GAGGAG 1 cut(s) 500
BseXI GCAGC 1 cut(s) 499
Bsh1236I CGCG 3 cut(s) 12, 431, 611
BshFI GGCC 2 cut(s) 380, 398
BshVI ATCGAT 1 cut(s) 53
BsiHKCI CYCGRG 1 cut(s) 414
BsiSI CCGG 2 cut(s) 314, 321
BslI CCNNNNNNNGG 2 cut(s) 320, 430
BsmAI GTCTC 2 cut(s) 252, 707
BsmBI CGTCTC 1 cut(s) 252
BsmI GAATGC 1 cut(s) 35
BsnI GGCC 2 cut(s) 380, 398
BsoBI CYCGRG 1 cut(s) 414
Bsp13I TCCGGA 1 cut(s) 320
Bsp143I GATC 4 cut(s) 506, 634, 670, 680
BspACI CCGC 5 cut(s) 133, 168, 215, 431, 732
BspANI GGCC 2 cut(s) 380, 398
BspDI ATCGAT 1 cut(s) 53
BspEI TCCGGA 1 cut(s) 320
BspFNI CGCG 3 cut(s) 12, 431, 611
BspLI GGNNCC 4 cut(s) 359, 389, 399, 636
BspPI GGATC 2 cut(s) 629, 642
BssMI GATC 4 cut(s) 506, 634, 670, 680
BssNI GRCGYC 1 cut(s) 261
Bst2UI CCWGG 2 cut(s) 385, 395
Bst4CI ACNGT 1 cut(s) 163
BstACI GRCGYC 1 cut(s) 261
BstBAI YACGTR 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 219
BstF5I GGATG 4 cut(s) 176, 288, 317, 776
BstFNI CGCG 3 cut(s) 12, 431, 611
BstKTI GATC 4 cut(s) 509, 637, 673, 683
BstMAI GTCTC 2 cut(s) 252, 707
BstMBI GATC 4 cut(s) 506, 634, 670, 680
BstMWI GCNNNNNNNGC 2 cut(s) 364, 560
BstNI CCWGG 2 cut(s) 385, 395
BstSCI CCNGG 3 cut(s) 312, 383, 393
BstUI CGCG 3 cut(s) 12, 431, 611
BstV1I GCAGC 1 cut(s) 499
BstX2I RGATCY 2 cut(s) 506, 634
BstXI CCANNNNNNTGG 1 cut(s) 354
BstYI RGATCY 2 cut(s) 506, 634
Bsu15I ATCGAT 1 cut(s) 53
BsuI GTATCC 1 cut(s) 760
BsuRI GGCC 2 cut(s) 380, 398
BsuTUI ATCGAT 1 cut(s) 53
BtgZI GCGATG 1 cut(s) 265
BtrI CACGTC 1 cut(s) 81
BtsCI GGATG 4 cut(s) 176, 288, 317, 776
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 219
Cfr13I GGNCC 2 cut(s) 344, 397
ClaI ATCGAT 1 cut(s) 53
CseI GACGC 1 cut(s) 600
CviAII CATG 1 cut(s) 763
DpnI GATC 4 cut(s) 508, 636, 672, 682
DpnII GATC 4 cut(s) 506, 634, 670, 680
Eco147I AGGCCT 1 cut(s) 380
Eco47I GGWCC 1 cut(s) 344
Eco57I CTGAAG 1 cut(s) 218
Eco72I CACGTG 1 cut(s) 20
Eco88I CYCGRG 1 cut(s) 414
EcoRII CCWGG 2 cut(s) 383, 393
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 1 cut(s) 766
FaiI YATR 6 cut(s) 50, 468, 530, 677, 764, 773
FatI CATG 1 cut(s) 762
Fnu4HI GCNGC 3 cut(s) 133, 432, 513
FokI GGATG 4 cut(s) 163, 275, 304, 763
Fsp4HI GCNGC 3 cut(s) 133, 432, 513
FspBI CTAG 1 cut(s) 782
GluI GCNGC 3 cut(s) 133, 432, 513
GsuI CTGGAG 2 cut(s) 127, 367
HaeIII GGCC 2 cut(s) 380, 398
HapII CCGG 2 cut(s) 314, 321
HgaI GACGC 1 cut(s) 600
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 1 cut(s) 766
HindIII AAGCTT 1 cut(s) 819
HinfI GANTC 5 cut(s) 58, 458, 656, 755, 801
HpaII CCGG 2 cut(s) 314, 321
HphI GGTGA 2 cut(s) 53, 638
Hpy188I TCNGA 4 cut(s) 305, 362, 463, 495
Hpy188III TCNNGA 3 cut(s) 321, 342, 414
Hpy99I CGWCG 6 cut(s) 85, 88, 266, 431, 616, 619
HpyAV CCTTC 4 cut(s) 190, 303, 370, 739
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4IV ACGT 4 cut(s) 19, 38, 80, 261
HpyCH4V TGCA 5 cut(s) 4, 33, 554, 585, 752
HpyF10VI GCNNNNNNNGC 2 cut(s) 364, 560
HpySE526I ACGT 4 cut(s) 19, 38, 80, 261
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 1 cut(s) 766
Kpn2I TCCGGA 1 cut(s) 320
Kzo9I GATC 4 cut(s) 506, 634, 670, 680
LmnI GCTCC 2 cut(s) 243, 363
Lsp1109I GCAGC 1 cut(s) 499
LweI GCATC 2 cut(s) 326, 397
MaeI CTAG 1 cut(s) 782
MaeII ACGT 4 cut(s) 19, 38, 80, 261
MaeIII GTNAC 2 cut(s) 20, 163
MalI GATC 4 cut(s) 508, 636, 672, 682
MboI GATC 4 cut(s) 506, 634, 670, 680
MboII GAAGA 3 cut(s) 224, 382, 385
MflI RGATCY 2 cut(s) 506, 634
MluCI AATT 6 cut(s) 191, 204, 440, 644, 725, 788
MluI ACGCGT 1 cut(s) 609
MlyI GAGTC 2 cut(s) 52, 665
MmeI TCCRAC 1 cut(s) 328
MroI TCCGGA 1 cut(s) 320
MseI TTAA 3 cut(s) 194, 696, 823
MspA1I CMGCKG 1 cut(s) 734
MspI CCGG 2 cut(s) 314, 321
MspR9I CCNGG 3 cut(s) 314, 385, 395
Mva1269I GAATGC 1 cut(s) 35
MvaI CCWGG 2 cut(s) 385, 395
MvnI CGCG 3 cut(s) 12, 431, 611
MwoI GCNNNNNNNGC 2 cut(s) 364, 560
NciI CCSGG 1 cut(s) 314
NdeII GATC 4 cut(s) 506, 634, 670, 680
NlaIII CATG 1 cut(s) 766
NlaIV GGNNCC 4 cut(s) 359, 389, 399, 636
NmeAIII GCCGAG 1 cut(s) 679
NmuCI GTSAC 1 cut(s) 20
PceI AGGCCT 1 cut(s) 380
PcsI WCGNNNNNNNCGW 3 cut(s) 16, 306, 467
PctI GAATGC 1 cut(s) 35
PfeI GAWTC 3 cut(s) 458, 755, 801
PkrI GCNGC 3 cut(s) 134, 433, 514
PleI GAGTC 2 cut(s) 52, 664
PmaCI CACGTG 1 cut(s) 20
PmlI CACGTG 1 cut(s) 20
PpsI GAGTC 2 cut(s) 52, 664
Ppu21I YACGTR 1 cut(s) 20
PsiI TTATAA 1 cut(s) 677
Psp6I CCWGG 2 cut(s) 383, 393
PspCI CACGTG 1 cut(s) 20
PspGI CCWGG 2 cut(s) 383, 393
PspN4I GGNNCC 4 cut(s) 359, 389, 399, 636
PspPI GGNCC 2 cut(s) 344, 397
PsuI RGATCY 2 cut(s) 506, 634
SaqAI TTAA 3 cut(s) 194, 696, 823
SatI GCNGC 3 cut(s) 133, 432, 513
Sau3AI GATC 4 cut(s) 506, 634, 670, 680
Sau96I GGNCC 2 cut(s) 344, 397
SchI GAGTC 2 cut(s) 52, 665
ScrFI CCNGG 3 cut(s) 314, 385, 395
SfaNI GCATC 2 cut(s) 326, 397
SinI GGWCC 1 cut(s) 344
Sse9I AATT 6 cut(s) 191, 204, 440, 644, 725, 788
SseBI AGGCCT 1 cut(s) 380
SsiI CCGC 5 cut(s) 133, 168, 215, 431, 732
SspMI CTAG 1 cut(s) 782
StuI AGGCCT 1 cut(s) 380
StyD4I CCNGG 3 cut(s) 312, 383, 393
TaaI ACNGT 1 cut(s) 163
TaiI ACGT 4 cut(s) 22, 41, 83, 264
TaqI TCGA 1 cut(s) 53
TasI AATT 6 cut(s) 191, 204, 440, 644, 725, 788
TauI GCSGC 2 cut(s) 135, 434
TfiI GAWTC 3 cut(s) 458, 755, 801
Tru1I TTAA 3 cut(s) 194, 696, 823
Tru9I TTAA 3 cut(s) 194, 696, 823
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 1 cut(s) 512
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 165
TspGWI ACGGA 2 cut(s) 470, 581
TspRI CASTG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 344
XapI RAATTY 1 cut(s) 788
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XspI CTAG 1 cut(s) 782
ZraI GACGTC 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.