Rh6DG414400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0013236
Physical Location & Seq
Reverse (-)
59899054 .. 59900251
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG414400.1

Sequence Viewer

Length: 318 bp
ATGGCTTCTGCTTGTTGCCGCCTTATCTCAACTACCTCCTCAGCCACTGTTACCGCCATTTCCTCCTTCCCTCCAAAACCAAACCCCCCAATTTCAAATCACAACTCCAATCACCGCCGACTCACAAACCTCAGTCGCAGAGACCTTGCTCTGCTCTCCTTCATCACTCTCGTCCCTCCCCTCTCTCGACCCGACCCGGCTTTCGGATTCGGCATTTCCAGTTATCGTGTTAGGACTTCGAAGATGTACTTGATCGTCGGTACCTTGCTTTGTTGGCAAACAAGATGTTTGGATACTGCATTTCTCATTGCATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.51

Weight (kDa)

10.43

Isoelectric Point (pI)

49.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 260
AccB1I GGYRCC 1 cut(s) 260
AciI CCGC 3 cut(s) 19, 54, 115
AfaI GTAC 2 cut(s) 248, 262
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 1 cut(s) 96
Alw26I GTCTC 1 cut(s) 135
AlwNI CAGNNNCTG 1 cut(s) 47
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
Asp718I GGTACC 1 cut(s) 260
AsuC2I CCSGG 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 104
AsuII TTCGAA 1 cut(s) 239
BanI GGYRCC 1 cut(s) 260
BbvCI CCTCAGC 1 cut(s) 40
BciVI GTATCC 1 cut(s) 286
BcnI CCSGG 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 135
BfuI GTATCC 1 cut(s) 286
BisI GCNGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 20
Bme1390I CCNGG 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 262
BmrFI CCNGG 1 cut(s) 197
Bpu10I CCTNAGC 1 cut(s) 40
Bpu14I TTCGAA 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 197
BsaI GGTCTC 1 cut(s) 135
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 219
Bse3DI GCAATG 1 cut(s) 306
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 2 cut(s) 54, 145
BseNI ACTGG 1 cut(s) 219
BseRI GAGGAG 1 cut(s) 28
BshNI GGYRCC 1 cut(s) 260
BsiSI CCGG 1 cut(s) 197
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 203
BsmAI GTCTC 1 cut(s) 135
BsmFI GGGAC 1 cut(s) 158
Bso31I GGTCTC 1 cut(s) 135
Bsp119I TTCGAA 1 cut(s) 239
Bsp143I GATC 1 cut(s) 252
BspACI CCGC 3 cut(s) 19, 54, 115
BspCNI CTCAG 2 cut(s) 53, 144
BspLI GGNNCC 1 cut(s) 262
BspT104I TTCGAA 1 cut(s) 239
BspT107I GGYRCC 1 cut(s) 260
BspTNI GGTCTC 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 306
BsrI ACTGG 1 cut(s) 219
BssMI GATC 1 cut(s) 252
Bst4CI ACNGT 1 cut(s) 49
BstBI TTCGAA 1 cut(s) 239
BstDEI CTNAG 2 cut(s) 40, 131
BstKTI GATC 1 cut(s) 255
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 1 cut(s) 252
BstMWI GCNNNNNNNGC 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 195
BsuI GTATCC 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 45
CaiI CAGNNNCTG 1 cut(s) 47
Csp6I GTAC 2 cut(s) 247, 261
CviJI RGCY 3 cut(s) 5, 44, 200
CviKI_1 RGCY 3 cut(s) 5, 44, 200
CviQI GTAC 2 cut(s) 247, 261
DdeI CTNAG 2 cut(s) 40, 131
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
Eco31I GGTCTC 1 cut(s) 135
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FaqI GGGAC 1 cut(s) 158
Fnu4HI GCNGC 1 cut(s) 19
Fsp4HI GCNGC 1 cut(s) 19
GluI GCNGC 1 cut(s) 19
HapII CCGG 1 cut(s) 197
HinfI GANTC 2 cut(s) 120, 207
HpaII CCGG 1 cut(s) 197
HphI GGTGA 1 cut(s) 104
Hpy188I TCNGA 1 cut(s) 206
Hpy188III TCNNGA 1 cut(s) 186
Hpy99I CGWCG 1 cut(s) 260
HpyAV CCTTC 2 cut(s) 76, 169
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4V TGCA 2 cut(s) 299, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 274
HpyF3I CTNAG 2 cut(s) 40, 131
KpnI GGTACC 1 cut(s) 264
Kzo9I GATC 1 cut(s) 252
LpnPI CCDG 2 cut(s) 210, 232
MaeIII GTNAC 1 cut(s) 49
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MboII GAAGA 1 cut(s) 253
MluCI AATT 1 cut(s) 90
MlyI GAGTC 1 cut(s) 114
MnlI CCTC 7 cut(s) 46, 49, 73, 81, 140, 186, 191
MseI TTAA 1 cut(s) 316
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 274
NciI CCSGG 1 cut(s) 197
NdeII GATC 1 cut(s) 252
NlaIV GGNNCC 1 cut(s) 262
NspV TTCGAA 1 cut(s) 239
PfeI GAWTC 1 cut(s) 207
PkrI GCNGC 1 cut(s) 20
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 262
PstNI CAGNNNCTG 1 cut(s) 47
RsaI GTAC 2 cut(s) 248, 262
RsaNI GTAC 2 cut(s) 247, 261
SaqAI TTAA 1 cut(s) 316
SatI GCNGC 1 cut(s) 19
Sau3AI GATC 1 cut(s) 252
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 197
SetI ASST 4 cut(s) 38, 132, 147, 266
SfuI TTCGAA 1 cut(s) 239
Sse9I AATT 1 cut(s) 90
SsiI CCGC 3 cut(s) 19, 54, 115
StyD4I CCNGG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 49
TaqI TCGA 2 cut(s) 187, 239
TasI AATT 1 cut(s) 90
TatI WGTACW 1 cut(s) 246
TauI GCSGC 1 cut(s) 21
TfiI GAWTC 1 cut(s) 207
Tru1I TTAA 1 cut(s) 316
Tru9I TTAA 1 cut(s) 316
TscAI CASTG 1 cut(s) 52
TspDTI ATGAA 1 cut(s) 151
TspRI CASTG 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.