Prupe.1G379100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013236
Physical Location & Seq
Forward (+)
34248139 .. 34250587
2449 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G379100.1

Sequence Viewer

Length: 717 bp
ATGGCACTTGCTGGGCACCGCCTTATCTCAAGCTCCTCATCATCCACTGTAACTGCCATTTCATCGTTCCCTCCAAAACCAAAACCCCCAATTTCAAATCACAACTTCTCCTCCAACCATGAAATTTCAAACTTCTTACGCAGTCGCAGAGACGTTGCTTTGCTCTCCTTCATCGCTCTAATTCCTTCTCTTTCGCGACCCGACCCGGCATTCGGACTCTCCTTCGGCATTTCAGGACCAAAGGATTGGCTCCGAGAACAGAAGAAGAAGGCCTCCAGGTTCCTCTTGGCCCCAATTGACGCCTCTAGAGAGAGCCTCCTCACTGCTCATCGAATACTCACGGCTACCGATTCTAATAGTACAAATGAAGAAATAGAGGAGGTTCAGAGACTATTTAAATCTGCTGCTCGGGATTGCGTTCCAGACGACAGGAATTCATTTGTTGCATTTCAAGCCAATACAGGGGTTGAGGTTTGCACATTCCGTCTGGTTGTAAAGAATGCGGCGTCGTTGCTTGGTGATAAGGATCCTGTAAAATTGGAAGCTGAATCCATGCTAAATGATCTTATAAGATCATTCACTTCTCTTAATGTTCTGGTAAATGAGACTGACGTTCAATTTGCCTCTGAAAGAAAGAAGGTTGCAGATTCTCTCATGGATACCATATCATCCCTAGACAAATTTGAGCAGGGAATTAAGGACTGCCTTGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

26.16

Weight (kDa)

6.44

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 569
AccB1I GGYRCC 1 cut(s) 15
AccII CGCG 1 cut(s) 196
AciI CCGC 2 cut(s) 19, 503
AclWI GGATC 2 cut(s) 521, 534
AcsI RAATTY 3 cut(s) 123, 433, 680
AcyI GRCGYC 2 cut(s) 300, 506
AfaI GTAC 1 cut(s) 361
AfiI CCNNNNNNNGG 2 cut(s) 212, 462
AgsI TTSAA 5 cut(s) 96, 129, 452, 617, 710
AjnI CCWGG 1 cut(s) 275
AluBI AGCT 3 cut(s) 33, 545, 713
AluI AGCT 3 cut(s) 33, 545, 713
Alw26I GTCTC 3 cut(s) 144, 382, 599
AlwI GGATC 2 cut(s) 521, 534
Ama87I CYCGRG 1 cut(s) 408
AoxI GGCC 2 cut(s) 270, 288
ApeKI GCWGC 1 cut(s) 404
ApoI RAATTY 3 cut(s) 123, 433, 680
ArsI GACNNNNNNTTYG 4 cut(s) 194, 226, 602, 634
AspS9I GGNCC 2 cut(s) 236, 289
AsuC2I CCSGG 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 530
AvaI CYCGRG 1 cut(s) 408
AvaII GGWCC 1 cut(s) 236
BaeGI GKGCMC 1 cut(s) 18
BamHI GGATCC 1 cut(s) 526
BanI GGYRCC 1 cut(s) 15
BbvI GCAGC 1 cut(s) 391
BceAI ACGGC 1 cut(s) 357
BciT130I CCWGG 1 cut(s) 277
BciVI GTATCC 1 cut(s) 652
BcnI CCSGG 1 cut(s) 206
BcoDI GTCTC 3 cut(s) 144, 382, 599
BfaI CTAG 2 cut(s) 306, 674
BfuI GTATCC 1 cut(s) 652
BisI GCNGC 2 cut(s) 405, 504
BlsI GCNGC 2 cut(s) 406, 505
Bme1390I CCNGG 2 cut(s) 206, 277
Bme18I GGWCC 1 cut(s) 236
BmeT110I CYCGRG 1 cut(s) 408
BmgT120I GGNCC 2 cut(s) 236, 289
BmiI GGNNCC 5 cut(s) 17, 251, 281, 291, 528
BmrFI CCNGG 2 cut(s) 206, 277
BplI GAGNNNNNCTC 2 cut(s) 300, 332
BpmI CTGGAG 1 cut(s) 259
BpuEI CTTGAG 1 cut(s) 13
BpuMI CCSGG 1 cut(s) 206
BsaBI GATNNNNATC 1 cut(s) 525
BsaHI GRCGYC 2 cut(s) 300, 506
BsaXI ACNNNNNCTCC 4 cut(s) 92, 95, 122, 125
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 462
Bse8I GATNNNNATC 1 cut(s) 525
BseBI CCWGG 1 cut(s) 277
BseGI GGATG 2 cut(s) 41, 668
BseJI GATNNNNATC 1 cut(s) 525
BseLI CCNNNNNNNGG 2 cut(s) 212, 462
BseRI GAGGAG 4 cut(s) 25, 100, 308, 392
BseSI GKGCMC 1 cut(s) 18
BseXI GCAGC 1 cut(s) 391
BseYI CCCAGC 1 cut(s) 11
Bsh1236I CGCG 1 cut(s) 196
BshFI GGCC 2 cut(s) 272, 290
BshNI GGYRCC 1 cut(s) 15
BsiHKCI CYCGRG 1 cut(s) 408
BsiSI CCGG 1 cut(s) 206
BslI CCNNNNNNNGG 2 cut(s) 212, 462
BsmAI GTCTC 3 cut(s) 144, 382, 599
BsmBI CGTCTC 1 cut(s) 144
BsmI GAATGC 2 cut(s) 209, 505
BsnI GGCC 2 cut(s) 272, 290
BsoBI CYCGRG 1 cut(s) 408
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 3 cut(s) 526, 562, 572
Bsp68I TCGCGA 1 cut(s) 196
BspACI CCGC 2 cut(s) 19, 503
BspANI GGCC 2 cut(s) 272, 290
BspFNI CGCG 1 cut(s) 196
BspLI GGNNCC 5 cut(s) 17, 251, 281, 291, 528
BspPI GGATC 2 cut(s) 521, 534
BspT107I GGYRCC 1 cut(s) 15
BssMI GATC 3 cut(s) 526, 562, 572
BssNI GRCGYC 2 cut(s) 300, 506
Bst2UI CCWGG 1 cut(s) 277
Bst4CI ACNGT 1 cut(s) 49
BstACI GRCGYC 2 cut(s) 300, 506
BstF5I GGATG 2 cut(s) 41, 668
BstFNI CGCG 1 cut(s) 196
BstKTI GATC 3 cut(s) 529, 565, 575
BstMAI GTCTC 3 cut(s) 144, 382, 599
BstMBI GATC 3 cut(s) 526, 562, 572
BstMWI GCNNNNNNNGC 1 cut(s) 452
BstNI CCWGG 1 cut(s) 277
BstSCI CCNGG 2 cut(s) 204, 275
BstSLI GKGCMC 1 cut(s) 18
BstUI CGCG 1 cut(s) 196
BstV1I GCAGC 1 cut(s) 391
BstX2I RGATCY 1 cut(s) 526
BstXI CCANNNNNNTGG 1 cut(s) 246
BstYI RGATCY 1 cut(s) 526
BsuI GTATCC 1 cut(s) 652
BsuRI GGCC 2 cut(s) 272, 290
BtgZI GCGATG 1 cut(s) 157
BtsCI GGATG 2 cut(s) 41, 668
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 2 cut(s) 45, 321
BtuMI TCGCGA 1 cut(s) 196
Cfr13I GGNCC 2 cut(s) 236, 289
CseI GACGC 2 cut(s) 308, 495
Csp6I GTAC 1 cut(s) 360
CviAII CATG 3 cut(s) 119, 553, 655
CviJI RGCY 9 cut(s) 33, 250, 272, 290, 315, 344, 455, 545, 713
CviKI_1 RGCY 9 cut(s) 33, 250, 272, 290, 315, 344, 455, 545, 713
CviQI GTAC 1 cut(s) 360
DpnI GATC 3 cut(s) 528, 564, 574
DpnII GATC 3 cut(s) 526, 562, 572
DraI TTTAAA 1 cut(s) 397
Eco147I AGGCCT 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 236
Eco88I CYCGRG 1 cut(s) 408
EcoRI GAATTC 1 cut(s) 433
EcoRII CCWGG 1 cut(s) 275
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 3 cut(s) 122, 556, 658
FaiI YATR 5 cut(s) 120, 554, 569, 656, 665
FatI CATG 3 cut(s) 118, 552, 654
Fnu4HI GCNGC 2 cut(s) 405, 504
FokI GGATG 2 cut(s) 28, 655
Fsp4HI GCNGC 2 cut(s) 405, 504
FspBI CTAG 2 cut(s) 306, 674
GluI GCNGC 2 cut(s) 405, 504
GsaI CCCAGC 1 cut(s) 15
GsuI CTGGAG 1 cut(s) 259
HaeIII GGCC 2 cut(s) 272, 290
HapII CCGG 1 cut(s) 206
HgaI GACGC 2 cut(s) 308, 495
Hin1I GRCGYC 2 cut(s) 300, 506
Hin1II CATG 3 cut(s) 122, 556, 658
HindIII AAGCTT 1 cut(s) 711
HinfI GANTC 4 cut(s) 216, 350, 548, 647
HpaII CCGG 1 cut(s) 206
HphI GGTGA 1 cut(s) 530
Hpy188I TCNGA 4 cut(s) 215, 254, 387, 628
Hpy188III TCNNGA 5 cut(s) 195, 234, 306, 410, 422
Hpy99I CGWCG 1 cut(s) 511
HpyAV CCTTC 5 cut(s) 178, 195, 232, 262, 631
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4IV ACGT 2 cut(s) 153, 612
HpyCH4V TGCA 3 cut(s) 446, 477, 644
HpyF10VI GCNNNNNNNGC 1 cut(s) 452
HpySE526I ACGT 2 cut(s) 153, 612
Hsp92I GRCGYC 2 cut(s) 300, 506
Hsp92II CATG 3 cut(s) 122, 556, 658
Kzo9I GATC 3 cut(s) 526, 562, 572
LmnI GCTCC 2 cut(s) 38, 255
Lsp1109I GCAGC 1 cut(s) 391
MaeI CTAG 2 cut(s) 306, 674
MaeII ACGT 2 cut(s) 153, 612
MaeIII GTNAC 1 cut(s) 49
MalI GATC 3 cut(s) 528, 564, 574
MboI GATC 3 cut(s) 526, 562, 572
MboII GAAGA 3 cut(s) 274, 277, 380
MfeI CAATTG 1 cut(s) 294
MflI RGATCY 1 cut(s) 526
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 9 cut(s) 90, 123, 180, 294, 433, 536, 617, 680, 693
MlyI GAGTC 1 cut(s) 210
MmeI TCCRAC 1 cut(s) 138
MseI TTAA 3 cut(s) 396, 588, 696
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 2 cut(s) 206, 277
MunI CAATTG 1 cut(s) 294
Mva1269I GAATGC 2 cut(s) 209, 505
MvaI CCWGG 1 cut(s) 277
MvnI CGCG 1 cut(s) 196
MwoI GCNNNNNNNGC 1 cut(s) 452
NciI CCSGG 1 cut(s) 206
NdeII GATC 3 cut(s) 526, 562, 572
NlaIII CATG 3 cut(s) 122, 556, 658
NlaIV GGNNCC 5 cut(s) 17, 251, 281, 291, 528
NruI TCGCGA 1 cut(s) 196
PceI AGGCCT 1 cut(s) 272
PctI GAATGC 2 cut(s) 209, 505
PfeI GAWTC 3 cut(s) 350, 548, 647
PkrI GCNGC 2 cut(s) 406, 505
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
PsiI TTATAA 1 cut(s) 569
Psp6I CCWGG 1 cut(s) 275
PspFI CCCAGC 1 cut(s) 11
PspGI CCWGG 1 cut(s) 275
PspN4I GGNNCC 5 cut(s) 17, 251, 281, 291, 528
PspPI GGNCC 2 cut(s) 236, 289
PsuI RGATCY 1 cut(s) 526
RruI TCGCGA 1 cut(s) 196
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
SaqAI TTAA 3 cut(s) 396, 588, 696
SatI GCNGC 2 cut(s) 405, 504
Sau3AI GATC 3 cut(s) 526, 562, 572
Sau96I GGNCC 2 cut(s) 236, 289
SchI GAGTC 1 cut(s) 210
ScrFI CCNGG 2 cut(s) 206, 277
SduI GDGCHC 1 cut(s) 18
SetI ASST 9 cut(s) 35, 156, 281, 384, 474, 547, 615, 642, 715
SinI GGWCC 1 cut(s) 236
SmiI ATTTAAAT 1 cut(s) 397
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
Sse9I AATT 9 cut(s) 90, 123, 180, 294, 433, 536, 617, 680, 693
SseBI AGGCCT 1 cut(s) 272
SsiI CCGC 2 cut(s) 19, 503
SspMI CTAG 2 cut(s) 306, 674
StuI AGGCCT 1 cut(s) 272
StyD4I CCNGG 2 cut(s) 204, 275
SwaI ATTTAAAT 1 cut(s) 397
TaaI ACNGT 1 cut(s) 49
TaiI ACGT 2 cut(s) 156, 615
TaqI TCGA 1 cut(s) 331
TasI AATT 9 cut(s) 90, 123, 180, 294, 433, 536, 617, 680, 693
TatI WGTACW 1 cut(s) 359
TauI GCSGC 1 cut(s) 506
TfiI GAWTC 3 cut(s) 350, 548, 647
Tru1I TTAA 3 cut(s) 396, 588, 696
Tru9I TTAA 3 cut(s) 396, 588, 696
TscAI CASTG 2 cut(s) 52, 328
TseI GCWGC 1 cut(s) 404
TspDTI ATGAA 5 cut(s) 51, 135, 160, 381, 426
TspGWI ACGGA 1 cut(s) 473
TspRI CASTG 2 cut(s) 52, 328
VpaK11BI GGWCC 1 cut(s) 236
XapI RAATTY 3 cut(s) 123, 433, 680
XbaI TCTAGA 1 cut(s) 305
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
XspI CTAG 2 cut(s) 306, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.