Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013236

Physical Location & Seq

Genomic Coordinates Forward (+)

1618861 .. 1620597

Gene Structure 1737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1027300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCAATTGCTTCGCACCGCCTTATCTCCAGCTCCTCCTCACCCACAGTAACCGCCATCTCATCCTTCCCTCCAAAATCAAATACCCTAATTTCAAATCCGAACGCTTCCCCCAATCTTCAACTCCCAAAACGCAGTCGTAGAGACGTCGCTTTGCTCTCCCTCGTCGCTCTCATCCCTTCGCTCTTCCGACCCGACGCGGCATCCGGATTCTCCTTCGGCATTTCAGGACCAAAGGATTGGCTCCGCGAGCAGAAGAAGAAGGCCTCCAGGTTCCTCCTGGCCCCGATTGATGCCTCCCGAGAGAGCCTCGTCGCGGCTCATCGACTACTCACGGCTACGGATTCGGATTATACGAACAAGGAGATGGAGGAGGTTCGGAGATTGTTTAGATCTGCTGCAAGGGATTGTGTTATAGAGGACAGGAACTCGTTTGTTGCATTTCAAGCCAATACAGGCGTTGAGGTTTGCACATTCCGTCTGGTTGTAAAGAACGCATCGTCGTTGCTTGGTGATAAGGATCCTGTAAAATTGGAAGCCGAGTCTATGCTAAATGATCTTGTAAGATCATTCACTTCTCTTAATGGTCTGGTAAATGAGACCGACGCTCAATTTGCCGCTGAAAGAAAGAAGGTTGCAGATTCTCTCATGGATACCTTATCATCCCTAGACAAATTTGAGCAAGGAATCAAGGACTGCCTTGACGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

237

Amino Acids

25.82

Weight (kDa)

8.44

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42765
fragaria_vesca	FvH4_2g39780
malus_domestica	MD08G1031600.v1.1 MD15G1027300.v1.1
prunus_persica	Prupe.1G379100_v2.0.a1 Prupe.1G379100_v2.0.a1
pyrus_communis	pycom08g02490 pycom15g02330
rosa_chinensis	RchiOBHm_Chr6g0301081
rosa_multiflora	Rmu_sc0003168.1_g000013 Rmu_sc0035551.1_g000004
rosa_roxburghii	Rroxscaffold_172G00445580 Rroxscaffold_7G00167200
rosa_rugosa	Rorug06G0300600
rosa_samantha	Rh6AG414500 Rh6BG421400 Rh6CG429100 Rh6DG414400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccII	CGCG	3 cut(s)	200, 249, 317
AccIII	TCCGGA	1 cut(s)	206
AciI	CCGC	6 cut(s)	19, 54, 200, 247, 317, 618
AclWI	GGATC	2 cut(s)	515, 528
AcsI	RAATTY	1 cut(s)	674
AcyI	GRCGYC	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgsI	TTSAA	3 cut(s)	96, 122, 446
AjnI	CCWGG	2 cut(s)	269, 279
AluBI	AGCT	1 cut(s)	33
AluI	AGCT	1 cut(s)	33
Alw26I	GTCTC	2 cut(s)	138, 593
AlwI	GGATC	2 cut(s)	515, 528
Ama87I	CYCGRG	1 cut(s)	300
Aor13HI	TCCGGA	1 cut(s)	206
AoxI	GGCC	2 cut(s)	264, 282
ApeKI	GCWGC	1 cut(s)	398
ApoI	RAATTY	1 cut(s)	674
ArsI	GACNNNNNNTTYG	2 cut(s)	596, 628
AspS9I	GGNCC	2 cut(s)	230, 283
AsuHPI	GGTGA	2 cut(s)	33, 524
AvaI	CYCGRG	1 cut(s)	300
AvaII	GGWCC	1 cut(s)	230
BamHI	GGATCC	1 cut(s)	520
BbvI	GCAGC	1 cut(s)	385
BccI	CCATC	2 cut(s)	65, 361
BceAI	ACGGC	1 cut(s)	351
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciT130I	CCWGG	2 cut(s)	271, 281
BciVI	GTATCC	1 cut(s)	646
BcoDI	GTCTC	2 cut(s)	138, 593
BfaI	CTAG	1 cut(s)	668
BfuI	GTATCC	1 cut(s)	646
BglII	AGATCT	1 cut(s)	392
BisI	GCNGC	4 cut(s)	201, 318, 399, 618
BlsI	GCNGC	4 cut(s)	202, 319, 400, 619
Bme1390I	CCNGG	2 cut(s)	271, 281
Bme18I	GGWCC	1 cut(s)	230
BmeT110I	CYCGRG	1 cut(s)	300
BmgT120I	GGNCC	2 cut(s)	230, 283
BmiI	GGNNCC	4 cut(s)	245, 275, 285, 522
BmrFI	CCNGG	2 cut(s)	271, 281
BmsI	GCATC	3 cut(s)	212, 283, 506
BplI	GAGNNNNNCTC	2 cut(s)	294, 326
BpmI	CTGGAG	2 cut(s)	13, 253
BsaBI	GATNNNNATC	1 cut(s)	519
BsaHI	GRCGYC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	593
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse8I	GATNNNNATC	1 cut(s)	519
BseAI	TCCGGA	1 cut(s)	206
BseBI	CCWGG	2 cut(s)	271, 281
BseGI	GGATG	4 cut(s)	62, 174, 203, 662
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseRI	GAGGAG	3 cut(s)	25, 28, 386
BseXI	GCAGC	1 cut(s)	385
Bsh1236I	CGCG	3 cut(s)	200, 249, 317
BshFI	GGCC	2 cut(s)	266, 284
BsiHKCI	CYCGRG	1 cut(s)	300
BsiSI	CCGG	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	2 cut(s)	138, 593
BsmBI	CGTCTC	1 cut(s)	138
BsnI	GGCC	2 cut(s)	266, 284
Bso31I	GGTCTC	1 cut(s)	593
BsoBI	CYCGRG	1 cut(s)	300
Bsp13I	TCCGGA	1 cut(s)	206
Bsp143I	GATC	4 cut(s)	392, 520, 556, 566
BspACI	CCGC	6 cut(s)	19, 54, 200, 247, 317, 618
BspANI	GGCC	2 cut(s)	266, 284
BspEI	TCCGGA	1 cut(s)	206
BspFNI	CGCG	3 cut(s)	200, 249, 317
BspLI	GGNNCC	4 cut(s)	245, 275, 285, 522
BspPI	GGATC	2 cut(s)	515, 528
BspQI	GCTCTTC	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	593
BssMI	GATC	4 cut(s)	392, 520, 556, 566
BssNI	GRCGYC	1 cut(s)	147
Bst2UI	CCWGG	2 cut(s)	271, 281
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	1 cut(s)	191
BstACI	GRCGYC	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	251
BstF5I	GGATG	4 cut(s)	62, 174, 203, 662
BstFNI	CGCG	3 cut(s)	200, 249, 317
BstKTI	GATC	4 cut(s)	395, 523, 559, 569
BstMAI	GTCTC	2 cut(s)	138, 593
BstMBI	GATC	4 cut(s)	392, 520, 556, 566
BstMWI	GCNNNNNNNGC	3 cut(s)	250, 446, 614
BstNI	CCWGG	2 cut(s)	271, 281
BstSCI	CCNGG	2 cut(s)	269, 279
BstUI	CGCG	3 cut(s)	200, 249, 317
BstV1I	GCAGC	1 cut(s)	385
BstX2I	RGATCY	2 cut(s)	392, 520
BstXI	CCANNNNNNTGG	1 cut(s)	240
BstYI	RGATCY	2 cut(s)	392, 520
BsuI	GTATCC	1 cut(s)	646
BsuRI	GGCC	2 cut(s)	266, 284
BtsCI	GGATG	4 cut(s)	62, 174, 203, 662
Cac8I	GCNNGC	1 cut(s)	251
Cfr13I	GGNCC	2 cut(s)	230, 283
CseI	GACGC	2 cut(s)	206, 614
CviAII	CATG	1 cut(s)	649
CviJI	RGCY	9 cut(s)	33, 244, 266, 284, 309, 320, 338, 449, 539
CviKI_1	RGCY	9 cut(s)	33, 244, 266, 284, 309, 320, 338, 449, 539
DpnI	GATC	4 cut(s)	394, 522, 558, 568
DpnII	GATC	4 cut(s)	392, 520, 556, 566
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Eco147I	AGGCCT	1 cut(s)	266
Eco31I	GGTCTC	1 cut(s)	593
Eco47I	GGWCC	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	300
EcoRII	CCWGG	2 cut(s)	269, 279
Esp3I	CGTCTC	1 cut(s)	138
FaeI	CATG	1 cut(s)	652
FaiI	YATR	4 cut(s)	354, 416, 548, 650
FatI	CATG	1 cut(s)	648
Fnu4HI	GCNGC	4 cut(s)	201, 318, 399, 618
FokI	GGATG	4 cut(s)	49, 161, 190, 649
Fsp4HI	GCNGC	4 cut(s)	201, 318, 399, 618
FspBI	CTAG	1 cut(s)	668
GluI	GCNGC	4 cut(s)	201, 318, 399, 618
GsuI	CTGGAG	2 cut(s)	13, 253
HaeIII	GGCC	2 cut(s)	266, 284
HapII	CCGG	1 cut(s)	207
HgaI	GACGC	2 cut(s)	206, 614
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	652
HinfI	GANTC	5 cut(s)	210, 344, 542, 641, 687
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	2 cut(s)	33, 524
Hpy188I	TCNGA	4 cut(s)	102, 191, 349, 381
Hpy188III	TCNNGA	3 cut(s)	207, 228, 300
Hpy99I	CGWCG	6 cut(s)	152, 170, 200, 317, 505, 608
HpyAV	CCTTC	5 cut(s)	76, 189, 226, 256, 625
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	4 cut(s)	401, 440, 471, 638
HpyF10VI	GCNNNNNNNGC	3 cut(s)	250, 446, 614
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	652
Kpn2I	TCCGGA	1 cut(s)	206
Kzo9I	GATC	4 cut(s)	392, 520, 556, 566
LguI	GCTCTTC	1 cut(s)	191
LmnI	GCTCC	2 cut(s)	38, 249
Lsp1109I	GCAGC	1 cut(s)	385
LweI	GCATC	3 cut(s)	212, 283, 506
MaeI	CTAG	1 cut(s)	668
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	4 cut(s)	394, 522, 558, 568
MboI	GATC	4 cut(s)	392, 520, 556, 566
MboII	GAAGA	4 cut(s)	110, 178, 268, 271
MfeI	CAATTG	1 cut(s)	6
MflI	RGATCY	2 cut(s)	392, 520
MluCI	AATT	5 cut(s)	6, 90, 530, 611, 674
MlyI	GAGTC	1 cut(s)	551
MmeI	TCCRAC	1 cut(s)	214
MroI	TCCGGA	1 cut(s)	206
MseI	TTAA	1 cut(s)	582
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	2 cut(s)	271, 281
MunI	CAATTG	1 cut(s)	6
MvaI	CCWGG	2 cut(s)	271, 281
MvnI	CGCG	3 cut(s)	200, 249, 317
MwoI	GCNNNNNNNGC	3 cut(s)	250, 446, 614
NdeII	GATC	4 cut(s)	392, 520, 556, 566
NlaIII	CATG	1 cut(s)	652
NlaIV	GGNNCC	4 cut(s)	245, 275, 285, 522
NmeAIII	GCCGAG	1 cut(s)	565
PceI	AGGCCT	1 cut(s)	266
PciSI	GCTCTTC	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	1 cut(s)	353
PfeI	GAWTC	4 cut(s)	210, 344, 641, 687
PkrI	GCNGC	4 cut(s)	202, 319, 400, 619
PleI	GAGTC	1 cut(s)	550
PpsI	GAGTC	1 cut(s)	550
Psp6I	CCWGG	2 cut(s)	269, 279
PspGI	CCWGG	2 cut(s)	269, 279
PspN4I	GGNNCC	4 cut(s)	245, 275, 285, 522
PspPI	GGNCC	2 cut(s)	230, 283
PsuI	RGATCY	2 cut(s)	392, 520
SapI	GCTCTTC	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	582
SatI	GCNGC	4 cut(s)	201, 318, 399, 618
Sau3AI	GATC	4 cut(s)	392, 520, 556, 566
Sau96I	GGNCC	2 cut(s)	230, 283
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	2 cut(s)	271, 281
SetI	ASST	7 cut(s)	35, 150, 275, 378, 468, 636, 659
SfaNI	GCATC	3 cut(s)	212, 283, 506
SinI	GGWCC	1 cut(s)	230
Sse9I	AATT	5 cut(s)	6, 90, 530, 611, 674
SseBI	AGGCCT	1 cut(s)	266
SsiI	CCGC	6 cut(s)	19, 54, 200, 247, 317, 618
SspMI	CTAG	1 cut(s)	668
StuI	AGGCCT	1 cut(s)	266
StyD4I	CCNGG	2 cut(s)	269, 279
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	325
TaqII	GACCGA	1 cut(s)	617
TasI	AATT	5 cut(s)	6, 90, 530, 611, 674
TauI	GCSGC	3 cut(s)	203, 320, 620
TfiI	GAWTC	4 cut(s)	210, 344, 641, 687
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TseI	GCWGC	1 cut(s)	398
TspGWI	ACGGA	2 cut(s)	356, 467
VpaK11BI	GGWCC	1 cut(s)	230
XapI	RAATTY	1 cut(s)	674
XcmI	CCANNNNNNNNNTGG	1 cut(s)	277
XspI	CTAG	1 cut(s)	668
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.